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1,000 results • Page
4 of 20
Sort: Rank
Rank
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Votes
Replies
1
vote
13
replies
965
views
error when running phg create-maf-vcf to build a built practical haplotype graph (v2)
pangenome
phg_v2
plants
PHG
updated 3 days ago by
lcj34
▴ 410 • written 9 days ago by
b.contreras.moreira
▴ 70
0
votes
2
replies
288
views
PopGenome lost individual information
PopGenome
1 day ago by
Yixuan
• 0
5
votes
15
replies
4.7k
views
6 follow
Why are there many reads with green color in IGV of RNA-seq data?
rna-seq
IGV
mapping
updated 6 days ago by
vague-barracuda-4686
• 0 • written 4.7 years ago by
Apprentice
▴ 160
2
votes
6
replies
452
views
Need help understanding core SNPs
SNPs
snippy
3 days ago by
ujichu
• 0
1
vote
1
reply
195
views
genome.fa to indix files to use it in rna-seq analysis
RNA-seq
hisat2
index
updated 6 days ago by
GenoMax
140k • written 6 days ago by
Hasan_Daaboul
• 0
0
votes
0
replies
163
views
Tutorial:
Parsing HMMER output
HMMER
updated 6 days ago by
GenoMax
140k • written 6 days ago by
I0110
▴ 130
2
votes
5
replies
451
views
Searching for gene in multiple genomes
gene
genome
alignment
sequence
updated 5 days ago by
BioinfGuru
★ 1.6k • written 6 days ago by
Miya
• 0
0
votes
0
replies
177
views
Only positive enrichment score in GSEA
enrichmentanalysis
clusterprofiler
gsea
bioconductor
rnaseq
6 days ago by
enee
▴ 10
0
votes
9
replies
454
views
Nextflow ERROR : Timeout waiting for connection from pool
nextflow
updated 7 hours ago by
GenoMax
140k • written 6 days ago by
dzisis1986
▴ 70
0
votes
0
replies
163
views
working with shapeit.
shapeit
6 days ago by
sanchit000singhdr098
• 0
0
votes
0
replies
155
views
Motif Scanning: HOMER vs MEME, settings?
homer
fimo
6 days ago by
mb
• 0
0
votes
0
replies
164
views
How to identify the phylogenetic node age of RNAs?
phylogeny
genome
evolution
RNA-seq
6 days ago by
Apex92
▴ 280
0
votes
9
replies
452
views
Intersect genomic locations with genes
fanc
Chromatin
conformation
Hic
hic
updated 6 days ago by
zx8754
11k • written 6 days ago by
naveedhasan2000
• 0
0
votes
3
replies
298
views
How to proceed with downstream analysis after tumor-only snp calling using Varscan2?
snv
compressing
varscan
bcftools
6 days ago by
kabir.deb
▴ 80
0
votes
0
replies
178
views
Questions on demultiplexing using Qiime2
demultiplexing
barcode
6 days ago by
Minh
• 0
1
vote
3
replies
2.4k
views
How to remove variants with 3+ alleles present Plink1.9
HaplotypeCaller
GATK
Plink1.9
vcftools
updated 6 days ago by
Jingjingzhang
• 0 • written 2.1 years ago by
ramshahaya
▴ 10
0
votes
3
replies
386
views
RNAseq
R
RNA-seq
Linux
6 days ago by
mrymrahimi70
• 0
0
votes
4
replies
496
views
calculating mean fragment length from CollectInsertSizeMetrics(Picard) output
count2fpkm
updated 6 days ago by
ATpoint
81k • written 10 days ago by
Niharika
• 0
2
votes
2
replies
257
views
Annotating indels and SNVs
annotation
indels
SNV
6 days ago by
am29
▴ 30
0
votes
4
replies
332
views
HISAT2 installation issue
HISAT2
updated 6 days ago by
GenoMax
140k • written 6 days ago by
eleven11
• 0
0
votes
8
replies
510
views
Fine-tuning NCBI taxid / taxidlist
BLAST
taxonomy
7 days ago by
theclubstyle
▴ 40
0
votes
0
replies
183
views
Problem encountered during Pearson Correlation Analysis between two immune cell subtypes
scRNA-seq
biostatistics
6 days ago by
applepie
• 0
1
vote
5
replies
442
views
Not getting any modification calls in nanopore reads with dorado basecaller
mofications
dorado
basecalling
nanopore
methylation
updated 6 days ago by
LauferVA
4.1k • written 7 days ago by
njornet
▴ 10
0
votes
6
replies
406
views
Download Panther entry list
PANTHER
6 days ago by
Nicolas
• 0
0
votes
0
replies
177
views
Troubleshooting SCTransform Error in Seurat: "Can't use NA as row index in a tibble for assignment"
SCTransform
updated 7 days ago by
Ram
43k • written 7 days ago by
Anisha
• 0
0
votes
0
replies
171
views
scRNA Cell Clustering Defined by Normalized Counts
Normalization
scRNA
Seurat
7 days ago by
sakura
• 0
0
votes
0
replies
173
views
Example - Meta Analysis TCGA and DepMap
Meta-Analysis
TCGA
DepMap
updated 7 days ago by
Ram
43k • written 7 days ago by
joseph.landry
▴ 50
0
votes
4
replies
356
views
bcftools select sites with multiple combinations of FILTER column
bcftools
6 days ago by
User000
▴ 690
0
votes
1
reply
198
views
Extract Umi sequence to readname
Sequence
FgBio
UMI
updated 7 days ago by
GenoMax
140k • written 7 days ago by
Smilesky
• 0
1
vote
3
replies
324
views
Combining and Forward and Reverse Reads
genome
alignment
concatenation
sequencing
3 days ago by
SineWave
• 0
0
votes
1
reply
392
views
Genbank Bacteriophage Genome Submission - Internal stop codons in CDS sequences
CDS
Genome
NCBI
Genbank
updated 7 days ago by
Ram
43k • written 7 weeks ago by
Sowmya Pulapet
▴ 70
0
votes
0
replies
141
views
Blog:
WGBS vs RRBS
RRBS
DNA-methylation
WGBS
updated 7 days ago by
Ram
43k • written 7 days ago by
Novogene
▴ 410
1
vote
6
replies
461
views
Quest about the input data for PCA analysis
PCA
5 days ago by
tujuchuanli
▴ 100
1
vote
2
replies
258
views
How to visualize scRNA-seq normalized data
Seurat
10x
scRNA-Seq
Single-cell
normalization
7 days ago by
SlowSD
• 0
2
votes
1
reply
208
views
Disease Prevalence Database/Disease Incidence Database
prevalence
updated 7 days ago by
Ram
43k • written 7 days ago by
Shicheng Guo
★ 9.4k
15
votes
6
replies
594
views
Need consultation about my rna-seq workflow
RNA-seq
Gene-expression
updated 7 days ago by
Ram
43k • written 8 days ago by
markusz
▴ 10
6
votes
7
replies
622
views
cutadapt not trimming all adapters in PE Illumina sequencing
NGS
Illumina
cutadapt
5 days ago by
joe
▴ 470
0
votes
1
reply
210
views
Using multiple reference genomes for alignment in dorado?
dorado
basecall
ONT
alignment
updated 7 days ago by
GenoMax
140k • written 7 days ago by
gideonav
• 0
0
votes
1
reply
263
views
Automatic protein symmetry classification from PDB coordinates
pdb
symmetry
protein
updated 7 days ago by
Mensur Dlakic
★ 26k • written 9 days ago by
Kartik
• 0
1
vote
7
replies
387
views
'Invalid parameter' error to generate a count matrix using featurecounts
RNA-seq
featurecounts
updated 7 days ago by
GenoMax
140k • written 7 days ago by
Shay
• 0
0
votes
1
reply
288
views
Find out shared differentially expressed genes between two cell lines due to knockdown treatment
expression
RNA
differential
gene
seq
updated 7 days ago by
swbarnes2
14k • written 8 days ago by
Xinqi
• 0
8
votes
16
replies
5.2k
views
9 follow
visualize CNV data based on WGS
CNV
updated 7 days ago by
clealk
▴ 50 • written 6.2 years ago by
Bogdan
★ 1.4k
1
vote
1
reply
175
views
Seeking for edgeR TMM Normalization calcul example
tmm
edgeR
deseq2
updated 7 days ago by
jared.andrews07
★ 16k • written 7 days ago by
Picasa
▴ 640
0
votes
0
replies
191
views
Tool:
MicrobiomePhylo: A Comprehensive Platform for Advanced Microbiome Amplicon Sequencing Data Analysis and Visualization
microbiome
analysis
data
16S
4 days ago by
camillatafuro
• 0
0
votes
0
replies
135
views
Tool for power calculation in GWAS for quantative trait
trait
quantative
power
calculation
GWAS
7 days ago by
chevivien
▴ 90
1
vote
1
reply
278
views
Advice for genetic diversity stats analysis with both variant and variant sites
pi
diversity
vcf
genetics
updated 7 days ago by
dthorbur
★ 1.7k • written 8 days ago by
ekirsch
• 0
0
votes
1
reply
209
views
How to find and visualize expression level of a dataset?
r
updated 8 days ago by
BioinfGuru
★ 1.6k • written 8 days ago by
uveyik
• 0
1
vote
3
replies
252
views
How to validate the assembly completeness of unaligned reads ?
MaSuRCA
SPAdes
updated 8 days ago by
GenoMax
140k • written 8 days ago by
Sony
▴ 10
0
votes
3
replies
425
views
Maximum returned records using epost?
E-utilities
biopython
updated 8 days ago by
GenoMax
140k • written 5 weeks ago by
theclubstyle
▴ 40
0
votes
1
reply
185
views
PEAR seems to have sense to me
PEAR
updated 8 days ago by
GenoMax
140k • written 8 days ago by
ManuelDB
▴ 80
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Here is my fastqc, especially adapter content graph, before trimming(R1 and R2): ![enter image description here][1] And this after trimm…
Comment: Low number of both surviving reads after trimming
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Thanks, I modified.
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Does GATK Haplotypecaller take care of ploidy because few plants are polyploid?
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