1 day ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
74
views
0
votes
0
replies
99
views
1 day ago by
Ben_Ensembl
★
2.4k
1
vote
2
replies
154
views
0
votes
1
reply
128
views
0
votes
2
replies
165
views
0
votes
0
replies
63
views
1 day ago by
kl
▴
10
2
votes
5
replies
219
views
updated 1 day ago by
GenoMax
141k
•
written 1 day ago by
ahmad.sajad4541
•
0
0
votes
0
replies
79
views
1 day ago by
Enrique
•
0
3
votes
5
replies
523
views
0
votes
0
replies
66
views
6
votes
3
replies
151
views
updated 1 day ago by
Carlo Yague
8.7k
•
written 1 day ago by
analyst
▴
20
0
votes
1
reply
159
views
updated 1 day ago by
colindaven
6.4k
•
written 2 days ago by
Ayush
•
0
0
votes
0
replies
68
views
1
vote
3
replies
207
views
11 hours ago by
anasjamshed
▴
120
0
votes
0
replies
103
views
updated 1 day ago by
Carlo Yague
8.7k
•
written 1 day ago by
Atul K.
•
0
3
votes
2
replies
240
views
1
vote
5
replies
394
views
0
votes
0
replies
131
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
sainavyav22
•
0
0
votes
0
replies
132
views
0
votes
0
replies
124
views
0
votes
0
replies
122
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
carlopecoraro2
★
2.5k
0
votes
4
replies
492
views
0
votes
2
replies
240
views
updated 1 day ago by
Ram
43k
•
written 3 days ago by
Matteo Ungaro
▴
100
7
votes
6
replies
418
views
1
vote
1
reply
244
views
updated 3 days ago by
Gordon Smyth
★
7.0k
•
written 3 days ago by
Bioinformatician
•
0
1
vote
0
replies
518
views
1
vote
1
reply
285
views
2
votes
5
replies
481
views
updated 2 days ago by
Mensur Dlakic
★
27k
•
written 3 days ago by
Giorgio
•
0
0
votes
1
reply
268
views
updated 3 days ago by
GenoMax
141k
•
written 3 days ago by
rebecca.calvo
•
0
0
votes
0
replies
201
views
2
votes
5
replies
657
views
0
votes
0
replies
179
views
0
votes
0
replies
181
views
3 days ago by
Nitin
•
0
1
vote
5
replies
528
views
0
votes
0
replies
181
views
0
votes
0
replies
175
views
3 days ago by
Rodolfo Adrián
•
0
3
votes
8
replies
1.2k
views
0
votes
1
reply
250
views
0
votes
0
replies
196
views
1
vote
5
replies
678
views
updated 3 days ago by
BioinfGuru
★
1.7k
•
written 5 days ago by
rrehimi
•
0
0
votes
0
replies
170
views
3 days ago by
DanielEB_fisk
▴
20
0
votes
1
reply
271
views
4
votes
9
replies
2.6k
views
Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
written 8.2 years ago by
dvelmeshev
•
0
2
votes
7
replies
5.2k
views
6 follow
updated 4 days ago by
ATpoint
81k
•
written 7.1 years ago by
boymin2020
▴
80
5
votes
13
replies
1.0k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
updated 3 days ago by
ATpoint
81k
•
written 4 days ago by
BioinfGuru
★
1.7k
1
vote
1
reply
403
views
4 days ago by
Dinmukhamed
•
0
0
votes
0
replies
189
views
updated 3 days ago by
Ram
43k
•
written 4 days ago by
Dinmukhamed
•
0
0
votes
0
replies
188
views
3
votes
4
replies
624
views
Recent Votes
Recent Locations •
All
Netherlands, just now
Germany, 1 minute ago
Norway, 1 minute ago
Moscow, 1 minute ago
Czech Republic, 2 minutes ago
United States, 5 minutes ago
Stony Brook University, NY, 5 minutes ago
Recent Awards •
All
Popular Question to
pfee418
▴
10
Popular Question to
sarahmanderni
▴
100
Popular Question to
Michael
54k
Popular Question to
michael.flower.14
▴
180
Popular Question to
sarahawan92
▴
10
Teacher to
Mensur Dlakic
★
27k
Recent Replies
Comment: Using vg gamsort with naive sorting algorithm
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Redirection of Duplicate PMIDs
by
dominickd
•
0
The scope is all publications related to grants from an NIH award program. There are currently ~120k publications in total (about a few hun…
Answer: Using vg gamsort with naive sorting algorithm
by
anovak
▴
110
The `-d` sorting mode does the entire sort in memory, so it will only work if you have enough memory to load your whole GAM file.
To fin…
Comment: Redirection of Duplicate PMIDs
by
dominickd
•
0
I have a list of PMIDs for publications linked to a list of grants, exported from NIH RePORTER.
Comment: Plot DNA methylation level of DMR on the basis of certain genes
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Should I remove unlocalized scaffols in reference genome before alignment?
by
GenoMax
141k
Yes you can remove those if you are only interested in annotated genes.
Comment: Help for coding: Trinity for differential gene expression studies
by
mchour
•
0
[This could help][1]
[1]: https://github.com/trinityrnaseq/RNASeq_Trinity_Tuxedo_Workshop/wiki/Trinity-De-novo-Transcriptome-Assembly-W…
Answer: How to compare the quality of assemblies
by
colindaven
6.4k
Are you sure you have looked into the HiFiasm output files (fasta and GFA) in detail and excluded non-primary contigs, hap1, hap2 and other…
Answer: How to identify gaps in a genome?
by
colindaven
6.4k
You can use seqtk to find gaps in a fasta
https://github.com/lh3/seqtk
seqtk gap
Usage: seqtk gap [-l 50] <in.fa>
Comment: some error in building kraken2 database
by
GenoMax
141k
> Obviously, running kraken2 after the build is complete does not produce the correct results
What do you get instead? Error/no output? Ha…
Comment: Failed kmer content
by
GenoMax
141k
Can you post a screenshot of what you are referring to? Why did you choose to "clean" your data?
FastQC analysis needs to be done keeping…
Comment: Help for coding: Trinity for differential gene expression studies
by
rhossen
•
0
It should be great if I have any assistance in my build up command using trinity package...
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over
by
WouterDeCoster
47k
I want reads in a specific short interval, but if I do that with samtools view I also get reads that are spliced over that interval.
Answer: Help for coding: Trinity for differential gene expression studies
by
mchour
•
0
Hello,
I would recommend following RSEM wiki for more information about the options, or even run RSEM directly, not with the script provi…
Answer: WGCNA preservation analysis
by
Michael
54k
This seems like a model case for why we need better sustainable bioinformatics data and services. I don't know the exact background behind …
Traffic: 2853 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6