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Comment: Convert amino acid sequences into nucleotide sequences
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sperezilvia
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okay, I will try it. Thank you so much for your help!
Answer: Convert amino acid sequences into nucleotide sequences
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There is backtranseq, also in EMBOSS. You can choose a codon model to deal with the ambiguities in the genetic code. However, that will not…
Comment: Convert amino acid sequences into nucleotide sequences
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sperezilvia
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I translated all the nucleotides sequences in all 6 frames. And then, I filtered the ones with the complete reading frame (with Metionine i…
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The steps would be as follows:
1. Have nucleotide sequence fasta
2. Translatie nucleotide seqs to protein sequence fasta
3. Apply filters …
Comment: Convert amino acid sequences into nucleotide sequences
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sperezilvia
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sorry, how can I filter proteins without translating nucleotides into proteins? Could you give me some code sketch for this you say please?…
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If you have the nucleotides sequences, just filter the proteins, extract a list of the IDs that pass your filter, then just re-extract the …
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`bamtools split` is intended to split the whole bam file. What you are describing is definititely not what it was designed for, and it woul…
Comment: Convert amino acid sequences into nucleotide sequences
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oh, I understand. I was afraid of that... In my case, I have a fasta file with multiple nucleotide sequences, which I then translated into …
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You can't *really* do this, because of the codon redundancy there is no single correct answer.
That said, I did write some code to do this…
Comment: Convert amino acid sequences into nucleotide sequences
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Hello, I made a mistake. I just edited the question, sorry. I need to convert amino acid sequences with frames into nucleotide sequences. T…
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The sequences in your example look like amino acid sequences already. In general, you should look for the process called translation, and y…
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