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830 results • Page
1 of 17
Sort: replies
Rank
Views
Votes
Replies
362
votes
82
replies
143k
views
35 follow
Tool:
Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
parallel
next-gen
ngs
updated 3 days ago by
jena
▴ 290 • written 11.1 years ago by
ole.tange
★ 4.4k
164
votes
70
replies
60k
views
34 follow
How To Efficiently Parse A Huge Fastq File?
fastq
next-gen-sequencing
updated 22 hours ago by
Ram
43k • written 12.7 years ago by
Panos
★ 1.8k
82
votes
46
replies
8.3k
views
15 follow
Tool:
ChatGPT optimized for bioinformatics questions
gpt
updated 15 days ago by
LauferVA
4.1k • written 9 months ago by
Sasha
▴ 830
185
votes
44
replies
83k
views
30 follow
Drawing Chromosome Ideograms With Data
ideogram
visualization
chromosome
updated 9 days ago by
Michael
54k • written 14.0 years ago by
Yuri
★ 1.7k
103
votes
42
replies
30k
views
34 follow
Forum:
List of cloud genomics companies
cloud-genomics
updated 20 days ago by
Jeremy Leipzig
22k • written 10.4 years ago by
14134125465346445
★ 3.6k
78
votes
38
replies
32k
views
15 follow
Illumina Instrument Type from fastq?
fastq
updated 28 days ago by
nickp60
▴ 60 • written 7.8 years ago by
andrew.j.skelton73
6.5k
15
votes
34
replies
16k
views
10 follow
Issues installing bcl2fastq?
bcl2fastq
demultiplexing
updated 22 days ago by
barslmn
★ 2.1k • written 6.6 years ago by
a.rex
▴ 350
49
votes
30
replies
11k
views
13 follow
Tutorial:
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
documentation
meta
how-to
updated 1 day ago by
Istvan Albert
100k • written 8.1 years ago by
Ram
43k
70
votes
29
replies
15k
views
13 follow
Tutorial:
Generating consensus sequence from bam file
fasta
consensus
bam
updated 15 days ago by
jkbonfield
★ 1.2k • written 5.1 years ago by
finswimmer
16k
21
votes
26
replies
9.4k
views
11 follow
Tutorial:
Create de novo repeat library
de-novo
repeat
annotation
updated 14 days ago by
Yao
▴ 30 • written 4.3 years ago by
Juke34
8.5k
66
votes
23
replies
48k
views
8 follow
extract dendrogram cluster from pheatmap
R
updated 12 days ago by
Getnet Tesfaw
• 0 • written 6.3 years ago by
1769mkc
★ 1.2k
12
votes
19
replies
5.2k
views
how to identify CDR region in antibody sequence
CDR
antibody
updated 28 days ago by
tiancheng
• 0 • written 21 months ago by
reany
▴ 50
75
votes
19
replies
3.3k
views
11 follow
Blog:
A list of technical advantages of Snakemake over Nextflow | Cloud solution for Snakemake
Snakemake
updated 27 days ago by
LauferVA
4.1k • written 6 months ago by
Kenny
▴ 30
12
votes
19
replies
14k
views
11 follow
SnpMatrix from VCF file
VCF
Eqtl
MatrixEQTL
SnpMatrix
vcftools
updated 14 days ago by
pmiller
▴ 10 • written 7.0 years ago by
Dhana
▴ 110
0
votes
18
replies
926
views
Import list and assign distinct colors in R
R
ggplot2
15 days ago by
kmyers2
▴ 80
34
votes
16
replies
20k
views
14 follow
Tutorial:
TCGA UUIDS to TCGA barcode (SampleID) in R
next-gen
GDC
R
TCGA
updated 10 days ago by
aUser
▴ 30 • written 7.5 years ago by
martinguerrerog89
▴ 310
8
votes
16
replies
5.2k
views
9 follow
visualize CNV data based on WGS
CNV
updated 8 days ago by
clealk
▴ 50 • written 6.2 years ago by
Bogdan
★ 1.4k
105
votes
15
replies
111k
views
16 follow
Convertion Of Gff3 To Gtf
gtf
gff
updated 8 days ago by
xiaoleiusc
▴ 140 • written 11.8 years ago by
GouthamAtla
12k
5
votes
15
replies
4.8k
views
6 follow
Why are there many reads with green color in IGV of RNA-seq data?
rna-seq
IGV
mapping
updated 6 days ago by
vague-barracuda-4686
• 0 • written 4.7 years ago by
Apprentice
▴ 160
8
votes
15
replies
1.3k
views
6 follow
Novel sparse optimisation for high accuracy cancer classification on the 33-cancer TCGA gene-expression dataset
TCGA
PANCAN
cancer-classification
gene-expression
updated 23 days ago by
Jeremy Leipzig
22k • written 4 weeks ago by
Mark Reilly
▴ 20
25
votes
15
replies
7.6k
views
9 follow
Randomize Read Order In Multigbp Fastq File?
fastq
updated 17 days ago by
Cliff
• 0 • written 12.8 years ago by
2184687-1231-83-
★ 5.1k
7
votes
15
replies
5.5k
views
9 follow
convert VCF to gVCF
gVCF
VCF
updated 21 days ago by
jena
▴ 290 • written 4.5 years ago by
mateid
• 0
47
votes
15
replies
16k
views
10 follow
DESeq2 compare all levels
differential-gene-expression
RNA-Seq
DESeq2
updated 9 days ago by
Bionaught
• 0 • written 5.7 years ago by
firestar
★ 1.6k
31
votes
14
replies
12k
views
11 follow
Finding Rrna Genes In Metagenomic Data
rna
rRNA
metagenomics
updated 3 days ago by
Ram
43k • written 13.5 years ago by
toshnam
▴ 650
4
votes
14
replies
4.0k
views
Trouble with bedtools getfasta
bedtools
getfasta
written 2.1 years ago by
gkunz
▴ 30
12
votes
14
replies
2.4k
views
8 follow
Forum:
Recovering bam files after unknown deletion in the storage
photorec
bam
sequencing
written 4.8 years ago by
Gabriel Wajnberg
▴ 70
4
votes
14
replies
4.5k
views
8 follow
Installation: Tax4Fun2 package are not found and github repository is not maintained anymore
Tax4Fun2
updated 1 day ago by
Ram
43k • written 21 months ago by
Elsa
▴ 20
6
votes
13
replies
487
views
Allocating right resources to HPC using LSF scheduler
BWA
GATK
hpc
lsf
bsub
3 days ago by
Maverick
▴ 10
46
votes
13
replies
14k
views
13 follow
Tutorial:
Methylation Analysis Tutorial in R - Part 1
R
cancer
methylation
updated 17 days ago by
Konstantinos
• 0 • written 3.5 years ago by
Hamid Ghaedi
3.2k
0
votes
13
replies
771
views
Help with the new nomenclature of multi-nucleotide variants
bam
igv
multinucleotide
17 days ago by
amy__
▴ 160
41
votes
13
replies
26k
views
13 follow
Gene Set Enrichment Analysis after DESeq2
RNA-Seq
DESeq2
geneontology
GSEA
updated 21 days ago by
CTLong
▴ 90 • written 6.4 years ago by
Sreeraj Thamban
▴ 290
3
votes
13
replies
444
views
Variant calling of GBS data
GBS
variants
BQSR
21 hours ago by
analyst
▴ 10
1
vote
13
replies
968
views
error when running phg create-maf-vcf to build a built practical haplotype graph (v2)
pangenome
phg_v2
plants
PHG
updated 3 days ago by
lcj34
▴ 410 • written 10 days ago by
b.contreras.moreira
▴ 70
0
votes
12
replies
569
views
BWA MEM different synthax on linux (bash) and macOS (zsh)
MEM
BWA
21 days ago by
gernophil
▴ 80
3
votes
12
replies
633
views
bbmap read length from fastq
fastq
bbmap
updated 15 days ago by
GenoMax
140k • written 20 days ago by
marco.barr
▴ 30
3
votes
12
replies
644
views
Facing problem with extracting phenotypic data from GEO
WGCNA
GEO
2 days ago by
bioinfo_enthusiast
• 0
8
votes
12
replies
13k
views
11 follow
ERROR: failed to find the gene identifier attribute in the 9th column of the provided GTF file.
featureCounts
updated 26 days ago by
BioinfGuru
★ 1.6k • written 4.0 years ago by
chatterjee.arumoy
▴ 50
4
votes
12
replies
3.4k
views
How to read VCF (v4.1) file? (student project) (samtools version 0.1.19)
variant-calling
samtools
VCF
BCF
updated 3 days ago by
Ram
43k • written 5.5 years ago by
c.clarido
▴ 110
31
votes
12
replies
834
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
29 days ago by
karlaarz
▴ 90
3
votes
12
replies
4.2k
views
samtools mpileup keeps making an empty file
samtools
pileup
updated 28 days ago by
gabt
▴ 120 • written 5.2 years ago by
James Reeve
▴ 130
8
votes
12
replies
1.0k
views
7 follow
How to speed-up to contruct phylogenetic tree
MEGA
tree
phylogenetic
updated 16 days ago by
Joe
21k • written 3 months ago by
Nelo
▴ 20
1
vote
12
replies
550
views
Nanopore data filtering using fastp
fastp
nanopore
23 hours ago by
emilydolivo97
• 0
12
votes
12
replies
788
views
Processing fastq files for genome assembly
fastq
vcf
assembly
amino-acid
updated 19 days ago by
Brian Bushnell
20k • written 22 days ago by
Neil
▴ 20
0
votes
12
replies
776
views
What is the sequence origin in human plasma?
human
sequence
cfDNA
3 days ago by
biwdpang
• 0
6
votes
12
replies
5.5k
views
6 follow
Getting sample information from GEO
GEO
NCBI
updated 2 days ago by
Tania
• 0 • written 6.9 years ago by
Tom_L
▴ 350
2
votes
11
replies
805
views
RNA seq aligner?
Alignment
4 days ago by
tesfaye
• 0
3
votes
11
replies
411
views
bedToBigBed error, what am I doing wrong?
Homer
software-error
UCSC
updated 8 days ago by
Pierre Lindenbaum
160k • written 9 days ago by
Ronin
• 0
1
vote
11
replies
316
views
struggle to get fasta files from ucsc goldenPath
ucsc
getfasta
fasta
updated 21 hours ago by
GenoMax
140k • written 1 day ago by
Lila M
★ 1.2k
4
votes
11
replies
1.2k
views
Paired layout, but one fastq file
fastq
updated 1 day ago by
GenoMax
140k • written 12 months ago by
Andy
▴ 120
0
votes
11
replies
676
views
Filtering VCF based on codon-transcript
vcf
bcftools
updated 12 days ago by
barslmn
★ 2.1k • written 23 days ago by
avelarbio46
▴ 30
830 results • Page
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Recent Votes
Answer: Is RNAseq data from a monoclonal cell line technically considered scRNAseq?
F*up Night style events for Bioinformatics ? Comment if you're interested!
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Volume II
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
Comment: Gene reads all zero for each sample
Synthetic lethality and cancer database
Answer: log2(TPM+1)
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Comment: Error running local blastn in R using system2
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Harrison
• 0
Yes, in my actual script I use the whole path to nt_euk. I was just showing `C:/data/nt_euk` as shorthand for the full path. There are no s…
Comment: Error running local blastn in R using system2
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I am seeing `'cat' is not recognized as an internal or external command, operable program or batch file.`
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140k
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140k
You will have to use a programming approach. BioPython is one option: https://warwick.ac.uk/fac/sci/moac/people/students/peter_cock/python/…
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That sounds fun, and I've got some of these that I have told many people about (to keep them from making the same mistakes as me). I am pla…
Comment: Mapping ortholog human and mouse transcript
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1769mkc
★ 1.2k
for hgnc and ensembl that can be done for transcript id for human to mouse ortholog its difficult to parse and map the exact version from g…
Comment: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of
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Take it from someone who has hosted both a successful and a failed research topic: these deadlines are unrealistic. I am guessing you are p…
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BioinfGuru
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Awesome, years ago I wrote my thesis on the use of Tau to calculate tissue specificity, enjoy! The supplementary materials in the paper is…
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That error is on the server side, nothing to do with you, and is very common. Usually the fix is to try again in an hour, or to insert host…
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hello @colindaven , Did you find a suitable tool for this purpose please ? I'm dealing with fungal dataset
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Can you upload or post a link to the genbank file please?
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I usually perform biomaRt queries with their `getBM()` function where I list the input using `filter` and `values` option and my request in…
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Thank you for your response. I have often seen commands like dds <- estimateSizeFactors(dds) normalized_counts <- counts(dds, normalized=T…
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It's the case that there's no indication of multi-threading in the documentation. However, it made me wonder why the developers would restr…
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