Limit : all time
all time today this week this month this year
1,000 results • Page 3 of 20
Sort: replies
Rank Views Votes Replies
78
votes
42
replies
29k
views
25 follow
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm rna-seq bioconductor
updated 27 days ago by 39k • written 9.6 years ago by ★ 7.7k
122
votes
42
replies
9.0k
views
21 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 3 months ago by 39k • written 10.5 years ago by 98k
151
votes
42
replies
176k
views
22 follow
How Do I Draw A Heatmap In R With Both A Color Key And Multiple Color Side Bars?
heatmap r
updated 12 months ago by 39k • written 11.3 years ago by 20k
57
votes
42
replies
5.3k
views
12 follow
Forum: Why is academic software hard to install?
software-installation
updated 16 months ago by 39k • written 8.6 years ago by 33k
8
votes
42
replies
3.8k
views
NaS (Nanopore Synthetic-long) help
Assembly preprocessing
updated 5 months ago by 39k • written 8.0 years ago by ▴ 290
11
votes
42
replies
3.0k
views
over presented kmer in fastq
fastqc RNA-Seq
5.6 years ago by Sam ▴ 150
31
votes
41
replies
1.6k
views
12 follow
Forum: Question regarding journal publications
journals publications Forum
3.3 years ago by K.Gee ▴ 40
202
votes
41
replies
23k
views
20 follow
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics cram gatk galaxy
updated 3 months ago by 39k • written 8.6 years ago by ★ 5.2k
5
votes
41
replies
2.0k
views
Insert sequence in nt database
nt
3.0 years ago by anasofiamoreira94 ▴ 80
98
votes
41
replies
4.6k
views
17 follow
Forum: I am really pissed off by the bioinformatics software world. Do/can we have a better solution?
software-error next-gen-sequencing
updated 8 weeks ago by 39k • written 6.8 years ago by ▴ 500
18
votes
41
replies
11k
views
6 follow
paired end illumina reads
Assembly paired end
updated 10 months ago by 39k • written 7.6 years ago by ▴ 290
23
votes
41
replies
2.5k
views
6 follow
I want to correct the erroneous barcode file, and the Python code that I've written, using Biopython, is very slow. How can I make this process fast…
NGS biopython illumina WGS
updated 25 days ago by 39k • written 6 weeks ago by ▴ 30
38
votes
41
replies
50k
views
9 follow
Volcano Plot from DEseq2
R
written 5.6 years ago by ★ 1.1k
13
votes
41
replies
1.7k
views
Is my file created completely
sam BWA-MEM BWA
updated 10 weeks ago by 39k • written 6.1 years ago by ▴ 10
19
votes
41
replies
7.4k
views
7 follow
n.sv number for batch effects in RNA-seq
RNA-Seq
updated 5.8 years ago by ★ 5.2k • written 5.8 years ago by ▴ 80
167
votes
41
replies
88k
views
27 follow
Multiline Fasta To Single Line Fasta
sequence fasta
updated 4 months ago by • 0 • written 12.0 years ago by ▴ 240
16
votes
41
replies
7.9k
views
How to extract information from headers of fasta file
sequence
updated 11 months ago by 39k • written 8.2 years ago by ▴ 70
24
votes
41
replies
13k
views
10 follow
WGCNA modules and categorical traits relationship
WGCNA
updated 6 months ago by • 0 • written 5.4 years ago by ▴ 120
18
votes
40
replies
16k
views
16 follow
Tutorial: Easy way to run easily orthoMCL (Copy & paste)
all-v-all orthomcl
updated 11 weeks ago by 39k • written 6.9 years ago by ▴ 170
68
votes
40
replies
5.0k
views
11 follow
Can We Agree On A Short Twitter Hashtag For Nextgen Sequencing?
next-gen sequencing sequencing
updated 11.6 years ago by ▴ 310 • written 11.6 years ago by ★ 1.3k
10
votes
40
replies
5.2k
views
weird insert size post trimming
RNA-Seq
updated 5.8 years ago by ★ 2.9k • written 5.8 years ago by ▴ 280
16
votes
40
replies
4.9k
views
About TCGA CNV data preprocessing
SNP CNV
updated 4.6 years ago by 85k • written 4.6 years ago by ▴ 40
67
votes
40
replies
8.3k
views
12 follow
Forum: I want to re-open the old debate: python or perl ?
perl python
updated 15 months ago by 39k • written 8.5 years ago by ★ 2.9k
6
votes
40
replies
9.3k
views
Fastx_Collapser Has No Fastq Output
fastx RNA-seq
updated 3 months ago by 39k • written 9.7 years ago by ▴ 240
40
votes
40
replies
9.6k
views
9 follow
What is the reason for trimming reads to 30 bp for ATAC-seq aligning?
ATAC-seq alignment
updated 5.3 years ago by 85k • written 6.7 years ago by ▴ 540
151
votes
39
replies
23k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics
updated 3 months ago by 39k • written 10.4 years ago by 3.0k
20
votes
39
replies
8.1k
views
7 follow
Is Blast+ Running As Fast As It Could ?
blast blast memory
updated 7.7 years ago by ▴ 160 • written 11.4 years ago by ▴ 160
226
votes
39
replies
282k
views
33 follow
Gene Id Conversion Tool
mapping conversion
updated 9 months ago by 39k • written 13.6 years ago by ▴ 620
11
votes
39
replies
3.1k
views
Any advice for a de novo genome assembly
k-mer de novo genome assembly
updated 6.5 years ago by ▴ 60 • written 6.5 years ago by ▴ 640
25
votes
39
replies
4.7k
views
8 follow
Forum: Bioinformatics Study Group
study-group
updated 3 months ago by 39k • written 9.9 years ago by ▴ 440
277
votes
39
replies
168k
views
29 follow
Tutorial: How to download raw sequence data from GEO/SRA
fastq SRA bam GEO
updated 10 weeks ago by 39k • written 8.8 years ago by 20k
91
votes
39
replies
134k
views
19 follow
Extract Reads From A Bam File That Fall Within A Given Region
bam
updated 6 weeks ago by ▴ 120 • written 10.9 years ago by ▴ 370
36
votes
39
replies
2.9k
views
11 follow
Forum: Survey/Vote: If you could double the speed of any three commandline tools, which three would they be?
blast RNA-Seq alignment next-gen-sequencing
updated 18 days ago by 39k • written 5.6 years ago by ▴ 130
18
votes
39
replies
3.0k
views
Tool: CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
cpp
updated 13 days ago by 39k • written 4.1 years ago by ▴ 50
69
votes
39
replies
3.4k
views
14 follow
Forum: Preparation for Bioinformatics.SE closing
meta biostars
updated 23 days ago by 39k • written 6.0 years ago by 13k
66
votes
39
replies
6.5k
views
13 follow
What Do You Consider The Most Trivial And The Most Challenging Tasks In Your Particular Field Of Work?
career subjective
updated 2.2 years ago by 39k • written 13.2 years ago by ▴ 310
81
votes
39
replies
6.2k
views
11 follow
News: State Of Biostar - Future Directions (January 2013)
biostars
updated 3 months ago by 39k • written 10.4 years ago by 98k
55
votes
39
replies
4.7k
views
8 follow
Programming Challenge - Synthetic Whole Genome Vcf
vcf python perl awk
updated 10.7 years ago by 8.2k • written 10.8 years ago by ▴ 310
39
votes
38
replies
7.2k
views
9 follow
DNA composition - all k-mers and their frequency in some sequencing data
sequencing
updated 9 months ago by 39k • written 7.6 years ago by 13k
48
votes
38
replies
15k
views
8 follow
Forum: Eukaryotic Genome Annotation in 2016
software genome annotation
updated 8 weeks ago by 39k • written 7.2 years ago by 11k
16
votes
38
replies
16k
views
Differential gene Analysis by Limma
Limma Microarray R
updated 13 months ago by 39k • written 8.3 years ago by ▴ 920
100
votes
38
replies
28k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 27 days ago by 21k • written 9.6 years ago by ★ 3.6k
224
votes
38
replies
136k
views
29 follow
Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
genome coordinates conversion liftover ensembl Tool
updated 5 months ago by ▴ 90 • written 10.3 years ago by 19k
129
votes
38
replies
5.9k
views
21 follow
Forum: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
bioinformatics
updated 5 days ago by 39k • written 4.2 years ago by 98k
27
votes
38
replies
17k
views
Heatmap based with FPKM values
RNA-Seq next-gen R
updated 4.1 years ago by 20 • written 5.5 years ago by ▴ 800
53
votes
38
replies
3.5k
views
10 follow
Multiple alignment software
alignment clustal omega tcoffee
updated 3.7 years ago by 98k • written 3.7 years ago by ▴ 130
47
votes
37
replies
7.5k
views
12 follow
Forum: The Organisation Of Really Contrived Acronyms (Orca)
acronyms
updated 3 months ago by 39k • written 9.8 years ago by 2.3k
29
votes
37
replies
2.6k
views
8 follow
Perl/Python script: phased vcf to phased tped
vcf ped phased
4.6 years ago by Shicheng Guo ★ 9.3k
5
votes
37
replies
2.7k
views
search text in one file and then replace with text from another file
search replace multiple files
5.6 years ago by mforthman ▴ 40
130
votes
37
replies
12k
views
27 follow
What Are The Obsolete Research Topics In Bioinformatics?
updated 11.8 years ago by ★ 1.3k • written 11.8 years ago by ▴ 820
1,000 results • Page 3 of 20
Recent Votes
Answer: How to sort gff3 according to chromosome order?
Answer: how to sort unique seq from fasta files
Answer: Make a BedGraph file
Answer: Finding Enhancers using Genomation library
A: Extracting N positions from fasta file
Comment: Gene enrichment analysis
Comment: Gene enrichment analysis
Recent Locations • All
Germany, just now
Belgium, just now
United States, 1 minute ago
Germany, 3 minutes ago
Mexico, 4 minutes ago
Spain, 4 minutes ago
EMBL-EBI, 5 minutes ago
Recent Awards • All
Popular Question to english.server ▴ 290
Teacher to Pierre Lindenbaum 154k
Voter to pilargmarch ▴ 100
Popular Question to anna ▴ 10
Scholar to Daniel ▴ 30
Popular Question to benformatics 3.6k
Popular Question to Dan ▴ 120
Recent Replies
Answer: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by by biofalconch ▴ 580
Here is a code that should work, but just like everyone else in the comments I'm a little confused why would you need to separate them: …
Comment: Make a BedGraph file by kirillkirilenko ▴ 10
It works, thank you!
Comment: CNNScoreVariants Error by Pierre Lindenbaum 154k
check you have a complete environment for GATK , including the python module "keras". https://gatk.broadinstitute.org/hc/en-us/articles/360…
Comment: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by by Cathal • 0
Did you have any luck in splitting the BAM file based on the 10x cell barcode? I would like to split a BAM file based to only include 5 spe…
Answer: Getting same value for start and end position, "DNA methylation" by ATpoint 72k
genomation is based on GenomicRanges which uses 1-based coordinates. https://www.biostars.org/p/84686/ Since a single CpG has a length o…
Comment: Gene enrichment analysis by ATpoint 72k
I cannot speak for this package but I recommend clusterProfiler where the universe argument isindeed all tested genes so your background.
Answer: Finding Enhancers using Genomation library by ATpoint 72k
You cannot derive enhancers from methylation profiles. Enhancers are regulatory elements, and they either are methylated or not. There is l…
Answer: convert data frame with character column to data frame with integer column by Basti ★ 1.5k
Cross-posted and answered there : https://stackoverflow.com/questions/76388032/convert-data-frame-with-character-column-to-data-frame-with-…
Comment: Getting same value for start and end position, "DNA methylation" by Basti ★ 1.5k
Your question lacks precision, we do not know what you are talking about
Comment: Gene enrichment analysis by Meisam ▴ 180
If you want to find enrichment of your selected genes versus the superset of all genes detected, then yes you mean the background. And to d…
Comment: WGCNA Trait File Issues by LChart 2.6k
The NAs are coming from the fact that each 'Sample' (which I assume is a unique identifier for a sample) is not actually a number and so th…
Answer: Why is coordinate sort required before findng read depths? by zhang yi xing ▴ 10
hi ,you can look at this fig in software **mosdepth** . By traversing a sorted BAM file from the beginning, one can obtain depth informat…
Comment: Getting species names and taxa id from assembly accession number by Mensur Dlakic ★ 23k
You should probably not advertise your personal email. It is not needed to understand the code. I don't know what exactly is the problem w…
Answer: how to sort unique seq from fasta files by shenwei356 8.1k
[seqkit common](https://bioinf.shenwei.me/seqkit/usage/#common) finds common sequences of multiple files by id/name/sequence seqkit co…
Answer: how to sort unique seq from fasta files by Mensur Dlakic ★ 23k
[**CD-HIT**][1] will remove all sequences that share identity above a certain threshold. If you set that threshold at `1.0` (meaning 100% i…
Traffic: 2932 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6