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830 results • Page
5 of 17
Sort: replies
Rank
Views
Votes
Replies
3
votes
5
replies
381
views
Losing my mind with a VCF problem
vcf
bcftools
updated 6 days ago by
Michael
54k • written 6 days ago by
a.beggs
▴ 30
4
votes
5
replies
352
views
Differential express genes in imbalance groups
Limma
9 days ago by
Chris
▴ 260
2
votes
5
replies
455
views
How do I use md5sum to check if my .fastq files from SRA Explorer have been downloaded correctly
scRNA-seq
md5
updated 27 days ago by
ATpoint
81k • written 6 weeks ago by
biotrekker
▴ 100
6
votes
5
replies
336
views
How to find gene ids for Pfam ids?
Pfam
Gene
8 days ago by
WUSCHEL
▴ 750
0
votes
5
replies
396
views
VCF file not being indexed, decided to sort could not sort
bcftools
updated 13 days ago by
LChart
3.9k • written 14 days ago by
hgrsce
• 0
1
vote
5
replies
373
views
UMI_extract for paired end reads of micro_RNA
UMI-tools
UMI
miRNA
updated 16 days ago by
ATpoint
81k • written 17 days ago by
otieno43
▴ 20
1
vote
5
replies
458
views
index fasta file for HaplotypeCaller
Samtools
HaplotypeCaller
GATK
faidx
19 days ago by
Mojtaba
• 0
3
votes
5
replies
369
views
(STAR) What causes a high number of reads that are unmapped because they are too short?
STAR
rna-seq
updated 22 days ago by
GenoMax
140k • written 22 days ago by
becky.reese
• 0
2
votes
5
replies
1.8k
views
alignement and Variant calling with BWA and samtools
variant-calling
samtools
BWA
updated 3 days ago by
Ram
43k • written 2.9 years ago by
simon.burgermeister
▴ 30
5
votes
5
replies
5.4k
views
beagle 4 exception: Duplicate marker
vcf
IBD
plink
beagle
updated 2 days ago by
Ram
43k • written 9.3 years ago by
galbarel
▴ 10
0
votes
5
replies
291
views
Bedtools getfasta: error
getfasta
bedtools
updated 17 days ago by
GenoMax
140k • written 18 days ago by
ummeswaiba
• 0
1
vote
5
replies
301
views
blast Segmentation fault
blastn
fasta
local-blast
updated 23 days ago by
Ram
43k • written 23 days ago by
giulia.cosenza
• 0
2
votes
5
replies
2.3k
views
GTF file for HIV strain pNL4-3
HIV
annotation
mapping
updated 28 days ago by
xiaoleiusc
▴ 140 • written 5.8 years ago by
caggtaagtat
★ 1.8k
0
votes
4
replies
248
views
Coverage observed in introns in the Knockdown genes but not in knockout genes
RNA-seq
STAR
IGV
1 day ago by
rohitsatyam102
▴ 840
0
votes
4
replies
357
views
bcftools select sites with multiple combinations of FILTER column
bcftools
7 days ago by
User000
▴ 690
5
votes
4
replies
397
views
Manhattan plot for TWAS results
TWAS
GWAS
manhattan-plot
27 days ago by
rheab1230
▴ 140
1
vote
4
replies
446
views
Salmon
Salmon
Seurat
Gene-Expression
updated 24 days ago by
Ram
43k • written 26 days ago by
Bizhan
• 0
0
votes
4
replies
340
views
Dsuite Dinvestigate error but no indication as to the source
Dsuite
20 days ago by
Drew
• 0
2
votes
4
replies
349
views
Subsetting Seurat object based on list of cell barcodes
seurat
updated 10 days ago by
Ming Tommy Tang
★ 3.9k • written 10 days ago by
bgbs
• 0
5
votes
4
replies
519
views
Separation of haplotypes in genome assembly
Haplotypes
pacbio
assembly
genome
reads
27 days ago by
sansan_96
▴ 50
3
votes
4
replies
564
views
Why many organisms even though they possess mitochondrial DNA (mtDNA), it is not typically represented by chromosomes labeled as "mtDNA"?
genome
mtDNA
reference-genome
sequence
22 days ago by
George X.
• 0
3
votes
4
replies
280
views
Receptors with internalization capability
receptor
14 days ago by
Shicheng Guo
★ 9.4k
0
votes
4
replies
415
views
What are the best HW p-value & MAF cutoffs based on my study ?
MAF
p-value
HWE
15 days ago by
mona.patoughi
• 0
5
votes
4
replies
351
views
change order of violin plots in ggplot2
R
ggplot2
violin-plots
updated 9 days ago by
Ram
43k • written 9 days ago by
Matteo Ungaro
▴ 100
3
votes
4
replies
1.4k
views
sam.gz files to bam using samtools
RNA-Seq
samtools
updated 11 days ago by
robertoalbanese.bioinfo
• 0 • written 13 months ago by
tikshyadav19
• 0
0
votes
4
replies
333
views
HISAT2 installation issue
HISAT2
updated 7 days ago by
GenoMax
140k • written 7 days ago by
eleven11
• 0
2
votes
4
replies
3.6k
views
Tutorial for analysing gpr files of microarray
GPR
microarray
updated 7 days ago by
bioyas
▴ 10 • written 5.4 years ago by
afli
▴ 190
3
votes
4
replies
330
views
Uploading HiC track on UCSC browser
custom_track
UCSC
HiC
22 days ago by
arsala521
▴ 30
0
votes
4
replies
2.7k
views
MACS2 BAMPE and BEDPE gave dramatically different "mean fragment size"
ChIP-Seq
updated 4 days ago by
axol0tl
• 0 • written 6.4 years ago by
Xinwei Han
• 0
3
votes
4
replies
256
views
Seqkit Replace
seqkit
fasta
updated 15 days ago by
Ram
43k • written 16 days ago by
pablo
▴ 300
2
votes
4
replies
338
views
Hybrid assembly Pacbio- Nanopore
long-reads
hybric
assembly
genome
short-reads
20 hours ago by
Lissa Cruz Saavedra
• 0
4
votes
4
replies
393
views
Snakemake: how to define output from a dictionary according to wildcard
wildcards
snakemake
dictionary
20 days ago by
ema
▴ 10
2
votes
4
replies
258
views
repeatseq compilation issues
NGS
Repeats
repeatseq
repeatexpansion
Genomics
updated 17 days ago by
Michael
54k • written 17 days ago by
adarsh_pp
▴ 40
4
votes
4
replies
1.5k
views
How to calculate coverage of Nanopore long read data?
sequencing
coverage
updated 18 days ago by
cmdcolin
★ 3.7k • written 15 months ago by
Arton
• 0
1
vote
4
replies
318
views
Long branch lengths, low bootstrap values and misalignments
mafft
muscle
iqtree
9 days ago by
samyu.senthil
▴ 10
2
votes
4
replies
311
views
Pearson correlation between Gene and clinical parameters
read-counts
Pearson-correlation
updated 8 days ago by
Shred
★ 1.4k • written 9 days ago by
Mary
• 0
0
votes
4
replies
1.4k
views
Building multiple consensus sequences from multiple fasta sequences
next-gen-sequencing
sequence
alignment
updated 18 days ago by
doppelganger1030
• 0 • written 4.7 years ago by
miss
• 0
0
votes
4
replies
350
views
Biostrings extract read
R
fastq
Biostrings
9 days ago by
marco.barr
▴ 30
2
votes
4
replies
381
views
How to download Accession List from NCBI on CLI?
CLI
NCBI
python
updated 24 days ago by
GenoMax
140k • written 27 days ago by
Cam
• 0
8
votes
4
replies
537
views
Why employ normalization methods, and how can they be utilized in DEG analysis?
R
DEGs
normalization
18 days ago by
wyt1995
▴ 30
5
votes
4
replies
2.3k
views
How to call mitochondrial SNP?
SNP
mitochondrial
updated 24 days ago by
Ram
43k • written 6.9 years ago by
hxlei613
▴ 100
0
votes
4
replies
365
views
merge regions into one bigger region
genomicranges
28 days ago by
Chironex
▴ 40
1
vote
4
replies
510
views
Rna editing
annotation
transcriptome
rna-seq
25 days ago by
RUBEM
• 0
0
votes
4
replies
274
views
error in wigToBigWig while converting mappability to bedgraph
mappability
gem
bedgraph
wigToBigWig
10 days ago by
Dora
▴ 10
1
vote
4
replies
302
views
Differential analysis using R
DNA
methylation
updated 24 days ago by
Michael
54k • written 24 days ago by
maryak
▴ 20
0
votes
4
replies
420
views
sortmerna not counting the EOF REV file, not working on paired end reads
sortmerna
cutadapt
updated 27 days ago by
GenoMax
140k • written 28 days ago by
jway
• 0
0
votes
4
replies
412
views
Simulation of gene level methylation data
simulation
methylation
17 days ago by
Mamatha Y S
• 0
3
votes
4
replies
362
views
How to merge VCF files from multiple samples and remove individual level information
VCF
21 days ago by
Arton
• 0
3
votes
4
replies
304
views
What should be used as a "baseline" in pooled CRISPR screen?
CRISPR
MAGECK
FACS
20 days ago by
Aleksandr
▴ 10
0
votes
4
replies
455
views
Does salmon work with combined short and long read bam file?
salmon
updated 22 days ago by
majd.abdulghani
▴ 10 • written 8 weeks ago by
shinyjj
▴ 50
830 results • Page
5 of 17
Recent Votes
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That error is on the server side, nothing to do with you, and is very common. Usually the fix is to try again in an hour, or to insert host…
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hello @colindaven , Did you find a suitable tool for this purpose please ? I'm dealing with fungal dataset
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Thank you for replying. I have separated the reads with at least one N on them and they account for 0.2% of the total reads in the file (8'…
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