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796 results • Page
3 of 16
Sort: Views
Rank
Views
Votes
Replies
2
votes
5
replies
1.8k
views
How to make alpha diversity boxplot?
alpha_diversity
taxa
ASV
box_plot
shannon
updated 8 days ago by
yeah
• 0 • written 10 months ago by
Amr
▴ 140
16
votes
16
replies
1.8k
views
Species identifcation using 16s rRNA
16srRNA
fasta
updated 11 days ago by
Ram
40k • written 2.6 years ago by
A_heath
▴ 140
1
vote
1
reply
1.8k
views
Using Blobtools to remove sequence contamination
blobtools
updated 17 hours ago by
Ram
40k • written 3.3 years ago by
kristina.mahan
▴ 160
3
votes
2
replies
1.7k
views
Extracting Residuals from Differential Expression Model
statistics
residuals
limma
updated 26 days ago by
Gordon Smyth
★ 6.4k • written 4.2 years ago by
JourneyToAbyss
▴ 210
1
vote
1
reply
1.7k
views
How to extract a range of nucleotides from a fasta file
fasta
updated 17 hours ago by
Ram
40k • written 3.2 years ago by
kristina.mahan
▴ 160
0
votes
1
reply
1.7k
views
error when running local chlorop1.1
chlorop
updated 7 days ago by
Ram
40k • written 7.3 years ago by
gerrychang1985
▴ 40
7
votes
8
replies
1.7k
views
7 follow
what is the mean of the file "*._f1.fq.gz" and "*._r2.fa.gz"
RNA-Seq
updated 20 days ago by
yhdist
▴ 70 • written 3.4 years ago by
yueli7
▴ 250
15
votes
12
replies
1.7k
views
Debugging a sed script to extract values from rows in .txt file
unix
sed
updated 17 hours ago by
Ram
40k • written 5.0 years ago by
kristina.mahan
▴ 160
1
vote
2
replies
1.6k
views
junction_annotation.py: How many 'novel' splice junctions/splice events are resonably expected from human RNA,
RNA-Seq
junction_annotation.py
human
updated 28 days ago by
Nicolas Lichilin
▴ 20 • written 4.6 years ago by
RNAseqer
▴ 250
1
vote
1
reply
1.6k
views
make paths variable in .cwl workflows and corresponding -job files
Common-Workflow-Language
cwl
updated 21 days ago by
Ram
40k • written 7.0 years ago by
c.ravarani
• 0
1
vote
5
replies
1.6k
views
Failing to use $mixin to include "global" settings
Common-Workflow-Language
cwl
updated 21 days ago by
Ram
40k • written 6.9 years ago by
karl.nordstrom
▴ 90
8
votes
5
replies
1.6k
views
BLASTp command line : filtering results by a minimum % of identity and % coverage
BLASTp
updated 11 days ago by
Ram
40k • written 24 months ago by
A_heath
▴ 140
2
votes
20
replies
1.6k
views
The number of SVs called by `vg call` is much smaller than the number of SVs in the VCF used to construct the graph
vg
26 days ago by
Maxine
▴ 30
0
votes
2
replies
1.6k
views
Question about REDItools
REDItools
updated 16 days ago by
Ethan Lee
• 0 • written 4.1 years ago by
tujuchuanli
▴ 100
3
votes
4
replies
1.5k
views
Reference implementation rejects step without inputs
Common-Workflow-Language
cwl
updated 21 days ago by
Ram
40k • written 6.8 years ago by
unduthegun
• 0
1
vote
4
replies
1.5k
views
How do you add gene annotations from a Diamond Blastx tsv file to a csv file with RNAseq differential expression data?
BLASTx
RNA-seq
diamond
updated 17 hours ago by
Ram
40k • written 2.2 years ago by
kristina.mahan
▴ 160
2
votes
3
replies
1.5k
views
Can I use output eval with CWL to create the list of output files (i.e. replace the glob results)?
Common-Workflow-Language
CWL
updated 21 days ago by
Ram
40k • written 4.4 years ago by
mavrommatis.konstantinos
▴ 10
2
votes
13
replies
1.5k
views
RepeatMasker error when trying to generate repeat sequence distribution pie chart (all code and errors provided)
repeatmasker
updated 6 days ago by
Ram
40k • written 6 weeks ago by
epianalysis
• 0
0
votes
7
replies
1.5k
views
what does "total read count" means in fastqc file. how does it helpful for analysis
fastqc
updated 13 days ago by
Ram
40k • written 24 months ago by
Fizzah
▴ 30
1
vote
9
replies
1.5k
views
Scanpy Pearson residual PCA error
python
scRNA
scanpy
PCA
updated 10 days ago by
Ram
40k • written 13 months ago by
Emily
▴ 30
2
votes
3
replies
1.5k
views
Racon command line with paired-ends Illumina reads
Illumina
Racon
updated 11 days ago by
Ram
40k • written 2.1 years ago by
A_heath
▴ 140
2
votes
2
replies
1.5k
views
CWL : default value and label for argument
Common-Workflow-Language
cwl
updated 21 days ago by
Ram
40k • written 7.0 years ago by
sebastien.letort
▴ 70
1
vote
5
replies
1.4k
views
--preserve_environment with docker containers?
cwltool
Common-Workflow-Language
cwl
updated 21 days ago by
Ram
40k • written 6.0 years ago by
Biowoogles
▴ 20
0
votes
1
reply
1.4k
views
NS, AC, AN and AF in VCF file
VCF
updated 28 days ago by
Mwangana
• 0 • written 14 months ago by
wangdp123
▴ 310
2
votes
7
replies
1.4k
views
How to find newline character in fastq file? Is it essential to remove them?
FASTQ
updated 13 days ago by
Ram
40k • written 23 months ago by
Fizzah
▴ 30
1
vote
5
replies
1.4k
views
Unmapped Reads in Kallisto
Kallisto
RNA-Seq
alignment
bustools
updated 4 days ago by
dsull
★ 4.8k • written 3.6 years ago by
msutennis23
• 0
6
votes
8
replies
1.4k
views
"Simplifying" a very fragmented genome for visualisation?
reference-genome
visualisation
fasta
updated 27 days ago by
Ram
40k • written 2.1 years ago by
setschmann
▴ 10
0
votes
2
replies
1.4k
views
Converting hdf5 file to loom file
single-cell
python
scvelo
RNA
updated 4 days ago by
bk11
★ 1.3k • written 2.4 years ago by
sidrah.maryam
▴ 50
2
votes
2
replies
1.4k
views
rerunning workflows with --cachedir sometimes repeats steps despite no changes to input
Common-Workflow-Language
cwl
updated 21 days ago by
Ram
40k • written 7.0 years ago by
c.ravarani
• 0
4
votes
12
replies
1.4k
views
Does anyone know how to download genBlastG?
gene-finding
genBlastG
updated 5 days ago by
dukecomeback
▴ 40 • written 5 months ago by
jaredbernard
▴ 20
0
votes
1
reply
1.3k
views
Convert .sqn file to .gbk
organelle
updated 17 hours ago by
Ram
40k • written 2.6 years ago by
kristina.mahan
▴ 160
2
votes
4
replies
1.3k
views
How to get mm39 repeatmasker track from UCSC genome browser
genome
ucsc
updated 24 days ago by
bioinfo_wen
▴ 10 • written 22 months ago by
saarantras
▴ 20
0
votes
3
replies
1.3k
views
how to calculate BAF and LRR from VCF or BCF files?
SNP
BAF
LRR
Variation
12 days ago by
xiaoguang
▴ 130
1
vote
4
replies
1.3k
views
ConsensusClusterPlus: How to extract most contributing features for each cluster
R
consensusclusterplus
updated 13 days ago by
LChart
3.4k • written 2.6 years ago by
komal.rathi
★ 4.1k
0
votes
5
replies
1.3k
views
What Coverage allele-fraction threshold to use?
allele-fraction
snps
updated 17 hours ago by
Ram
40k • written 2.5 years ago by
kristina.mahan
▴ 160
9
votes
6
replies
1.3k
views
6 follow
Forum:
GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl
bug
GTF
updated 20 days ago by
ATpoint
77k • written 10 months ago by
dlaehnemann
▴ 30
3
votes
1
reply
1.2k
views
%% error in Rstudio
seurat
r
updated 10 days ago by
Ram
40k • written 2.1 years ago by
AbsaR
• 0
1
vote
1
reply
1.2k
views
CWL: Input restrictions for integers
Common-Workflow-Language
CWL
updated 21 days ago by
Ram
40k • written 6.3 years ago by
schujo
▴ 10
9
votes
4
replies
1.2k
views
How to extend contigs from single-end reads?
contigs
contig-extension
updated 11 days ago by
Ram
40k • written 3.1 years ago by
A_heath
▴ 140
6
votes
7
replies
1.2k
views
wc -l or wc -c which linux command is best to find total read count in fastq file?
linux
updated 13 days ago by
Ram
40k • written 23 months ago by
Fizzah
▴ 30
10
votes
11
replies
1.2k
views
Seeking feedback on ChIP-seq normalization method: Calculating scaling factors by dividing input by IP, including spike-in
coverage
spike-in
scaling-factor
ChIP-seq
24 days ago by
kalavattam
▴ 190
6
votes
4
replies
1.2k
views
How to sort blast results by a minimum % of identical matches?
blast
updated 11 days ago by
Ram
40k • written 2.9 years ago by
A_heath
▴ 140
2
votes
2
replies
1.2k
views
How to convert genotypes "1, 2" to "0,1, 2"?
snp
plink
updated 26 days ago by
karthivalarmathi99
▴ 10 • written 2.2 years ago by
Emy
▴ 50
8
votes
17
replies
1.2k
views
7 follow
How to limit fasta header to 40 characters?
unix
seqkit
fasta
updated 26 days ago by
Roop
• 0 • written 27 days ago by
fishingline37
• 0
1
vote
2
replies
1.1k
views
Why is chromHMM's binarizeBed with the -peaks argument not recommended for broad peaks?
chromHMM
macs2
chipseq
cut&run
cutandrun
updated 28 days ago by
e.r.zakiev
▴ 80 • written 3.1 years ago by
Melinda
• 0
9
votes
4
replies
1.1k
views
Illumina Q score
Illumina
quality-score
updated 11 days ago by
Ram
40k • written 2.1 years ago by
A_heath
▴ 140
0
votes
0
replies
1.1k
views
Job:
Research Scientist 5 – Bioinformatics and Computer Biology, Center for Dementia Research (CDR), Nathan Kline Institute for Psychiatric Research
Neuroscience
Biostatistics
updated 12 days ago by
Ram
40k • written 12 days ago by
cdrinfo
• 0
10
votes
9
replies
1.1k
views
Help interpretating DESeq2 output
Deseq2
Fold-Change
RNA-seq
updated 17 days ago by
Ram
40k • written 2.9 years ago by
nanoide
▴ 110
0
votes
2
replies
1.1k
views
Runtime parameters request: average read/write speed & average total run time
Common-Workflow-Language
cwl
updated 21 days ago by
Ram
40k • written 7.0 years ago by
tantrev
▴ 30
1
vote
3
replies
1.1k
views
GenotypeGVCF too many genotypes from pooled samples
GenotypeGVCFs
GATK
VCF
updated 17 hours ago by
Paula Andrea
• 0 • written 2.4 years ago by
Vic
▴ 90
796 results • Page
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