0
votes
0
replies
605
views
0
votes
0
replies
593
views
updated 11 minutes ago by
Ram
39k
•
written 3.1 years ago by
genomicshr
▴
30
0
votes
0
replies
571
views
updated 1 minute ago by
Ram
39k
•
written 3.1 years ago by
stephens_sarah
▴
150
0
votes
1
reply
569
views
0
votes
0
replies
568
views
0
votes
0
replies
549
views
updated 5 minutes ago by
Ram
39k
•
written 3.1 years ago by
laurent.albou
•
0
2
votes
0
replies
539
views
updated 2 hours ago by
Ram
39k
•
written 3.1 years ago by
carlopecoraro2
★
2.3k
0
votes
0
replies
526
views
updated 3 hours ago by
Ram
39k
•
written 3.1 years ago by
stephens_sarah
▴
150
2
votes
0
replies
525
views
updated 3 hours ago by
Ram
39k
•
written 3.1 years ago by
carlopecoraro2
★
2.3k
5
votes
7
replies
521
views
0
votes
0
replies
518
views
updated 2 hours ago by
Ram
39k
•
written 3.1 years ago by
stephens_sarah
▴
150
2
votes
0
replies
482
views
updated 5 minutes ago by
Ram
39k
•
written 3.1 years ago by
carlopecoraro2
★
2.3k
1
vote
0
replies
462
views
Forum:
New to bioinformatics
updated just now by
Ram
39k
•
written 3.1 years ago by
skusmle2013
▴
10
2
votes
0
replies
419
views
updated 3 hours ago by
Ram
39k
•
written 3.2 years ago by
carlopecoraro2
★
2.3k
1
vote
5
replies
402
views
updated 6 hours ago by
GenoMax
130k
•
written 7 days ago by
Wilford203
•
0
2
votes
2
replies
397
views
updated 2 hours ago by
Ram
39k
•
written 3.1 years ago by
blake.mcmurray
•
0
0
votes
0
replies
371
views
updated 4 hours ago by
Ram
39k
•
written 3.2 years ago by
hannah.flintham
•
0
0
votes
6
replies
341
views
1
vote
2
replies
288
views
updated 23 hours ago by
Alex Reynolds
35k
•
written 17 days ago by
Ethan
•
0
1
vote
6
replies
284
views
1
vote
2
replies
251
views
0
votes
2
replies
238
views
5
votes
8
replies
219
views
1
vote
3
replies
219
views
17 hours ago by
hellokwmin
•
0
0
votes
1
reply
202
views
5 hours ago by
developmed
•
0
0
votes
1
reply
163
views
updated 23 hours ago by
cmdcolin
★
3.0k
•
written 1 day ago by
shwetamgr1
▴
10
2
votes
3
replies
142
views
2
votes
3
replies
127
views
2
votes
1
reply
118
views
0
votes
1
reply
114
views
0
votes
2
replies
108
views
1
vote
2
replies
107
views
0
votes
0
replies
96
views
7
votes
7
replies
95
views
1
vote
1
reply
94
views
updated 7 hours ago by
Pierre Lindenbaum
155k
•
written 7 hours ago by
javiflaja
•
0
1
vote
1
reply
86
views
0
votes
0
replies
86
views
updated 4 hours ago by
Ram
39k
•
written 21 hours ago by
sodiumnitrate
▴
20
2
votes
1
reply
80
views
0
votes
1
reply
79
views
updated 6 hours ago by
Pierre Lindenbaum
155k
•
written 8 hours ago by
Belanov
▴
10
0
votes
1
reply
71
views
1 hour ago by
Pierre Lindenbaum
155k
0
votes
1
reply
54
views
1
vote
5
replies
46
views
updated 1 minute ago by
Matthias Zepper
3.7k
•
written 1 hour ago by
Vincent Laufer
★
3.0k
0
votes
0
replies
46
views
0
votes
0
replies
43
views
0
votes
4
replies
30
views
updated 53 minutes ago by
Ram
39k
•
written 2 hours ago by
Hyper_Odin
▴
280
0
votes
0
replies
29
views
0
votes
0
replies
15
views
0
votes
0
replies
11
views
updated 16 minutes ago by
Pierre Lindenbaum
155k
•
written 37 minutes ago by
Maxine
•
0
Recent Votes
Recent Locations •
All
Stockholm, Sweden, just now
Bologna, just now
United States, just now
United States, 1 minute ago
United States, 1 minute ago
Germany, 1 minute ago
United States, 1 minute ago
Recent Awards •
All
Popular Question to
Sandhiya
▴
20
Commentator to
Sasha
▴
420
Teacher to
e.r.zakiev
▴
70
Popular Question to
Raheleh
▴
250
Popular Question to
nishimalhotra2612
▴
50
Popular Question to
Omics data mining
▴
220
Recent Replies
Answer: The .vcf format: is there a file format better suited for the era of pangenomics
by
Matthias Zepper
3.7k
[I can't help but be reminded of this XKCD strip][1].
1. Disagree. In my humble opinion, there is no such thing as an ideal data forma…
Answer: ChatGPT optimized for bioinformatics questions
by
Vincent Laufer
★
3.0k
@358a1a47
This is really timely work - two thoughts for consideration:
1) I think that a major focus here should be on devising metr…
Answer: ChatGPT optimized for bioinformatics questions
by
Ram
39k
I tested it again today, on a bit of a meta level. I asked it for its opinion of biostars and it assumed I had some random context and went…
Comment: BED files
by
lela2314
•
0
That is what I am doing but it does not seem to be working. I am doing:
bedtools intersect -a enhancer_muscle2.bed -b chip_tfbs.bed > over…
Comment: The .vcf format: is there a file format better suited for the era of pangenomics
by
Pierre Lindenbaum
155k
shameless LLM : https://ai.tinybio.cloud/chat
> The statement "VCF is the ideal file format for genomic information; no better file format…
Comment: BED files
by
Pierre Lindenbaum
155k
> I have been trying to solve
what did you try ? (... and your answer will contain `bedtools intersect`)
Comment: The .vcf format: is there a file format better suited for the era of pangenomics
by
Vincent Laufer
★
3.0k
@ram - this was as bit of a dirty tactic on my part: I stated it in the extreme to provoke disagreement. I agree with you - the irony is, d…
Comment: The .vcf format: is there a file format better suited for the era of pangenomics
by
Ram
39k
> .vcf is the ideal file format for genomic information; no better file format can be conceived whether in the era of singular linear refer…
Comment: GISTIC from ASCAT
by
Ram
39k
You can use pastebin or GitHub gist to paste more lines, maybe you're being restricted because you're a new user. Did GISTIC give you somet…
Comment: Why does Ensembl VEP provide HGVSg for some variants and not others?
by
Jeremy Leipzig
21k
you're right it's an off-by-one-error on my part. thanks
Comment: A question about the raw RNA-seq processing workflow
by
swbarnes2
13k
are files a,b and c all from the same sample? Or are you trying to align three different samples all together?
Comment: multiqc: group samples by population + boxplot ?
by
GenoMax
130k
Tagging: https://www.biostars.org/u/14100/
Rest of this line is required by biostars code.
Comment: Why does Ensembl VEP provide HGVSg for some variants and not others?
by
Vincent Laufer
★
3.0k
@genomax thank you for clarifying that - end of an era!
Comment: Why does Ensembl VEP provide HGVSg for some variants and not others?
by
GenoMax
130k
FYI: Emily no longer works for/at Ensembl. That is the reason she has taken out `_ensembl` from her profile.
https://www.biostars.org/u/23…
Traffic: 2186 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6