updated 5 hours ago by
Ram
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written 6.5 years ago by
Alternative
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270
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8
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1 day ago by
Ram
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updated 1 day ago by
Ram
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written 6.3 years ago by
aiswaryabioinfo
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30
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1.8k
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updated 1 day ago by
Ram
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written 3.4 years ago by
chatterjee.arumoy
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50
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updated 5 hours ago by
Ram
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written 6.6 years ago by
boymin2020
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80
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1.8k
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updated 1 day ago by
Ram
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written 3.5 years ago by
Sebastian Hesse
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340
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1.8k
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updated 2 days ago by
Ram
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written 7.1 years ago by
mrodrigues.fernanda
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50
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updated 1 day ago by
Ram
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written 4.8 years ago by
jperezboza
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20
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1.7k
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updated 1 day ago by
Ram
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written 7.1 years ago by
vakul.mohanty
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270
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updated 5 hours ago by
Ram
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written 5.4 years ago by
baldissera152
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10
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updated 1 day ago by
Ram
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written 3.4 years ago by
appropiate
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80
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updated 1 day ago by
Ram
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written 6.7 years ago by
rahel14350
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40
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updated 5 hours ago by
Ram
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written 7.2 years ago by
tolgaturant
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20
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6
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updated 3 days ago by
Ram
43k
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written 3.8 years ago by
amirmehrgou
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10
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6
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updated 1 day ago by
Ram
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written 5.2 years ago by
Behram Radmanesh
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40
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updated 1 day ago by
Ram
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written 7.1 years ago by
German.M.Demidov
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2.9k
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2
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1.5k
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updated 1 day ago by
Ram
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written 5.1 years ago by
mohammedtoufiq91
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250
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3
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updated 5 hours ago by
Ram
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written 3.5 years ago by
oakhamwolf
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20
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updated 1 day ago by
Ram
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written 8.0 years ago by
gerrychang1985
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40
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updated 5 hours ago by
Ram
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written 2.2 years ago by
claysandel
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0
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15
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updated 3 days ago by
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written 19 months ago by
wormball
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GenoMax
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Popular Question to
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Recent Replies
Comment: Removing duplicates
by
joe
▴
500
I'd try those OP @samuel recommends
My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do:
bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option.
Get the PDB ID's
$ ./get.sh "Mus musculus" AHR
4M4X
5NJ8
5V0L
8H77
Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that.
EDIT: I've updated that number to 250. I'm hoping you won't need …
Answer: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script:
```bash
organism=$(echo $1 | sed 's/ /%20/g')
gene=$2
curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads?
Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like:
https://www.rcsb.org/search?requ…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
PDB has a search API: https://search.rcsb.org/#search-example-1
Here's the JSON from your search query:
```
{
"query": {
"type": "grou…
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
•
0
Thank you very much. Actually I looked at there, but actually I want to find something like according to search url like this [QUERY: Gene …
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