updated 6 months ago by
Devarakonda
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0
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written 8.4 years ago by
vigneshprbh37
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30
11
votes
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61k
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7 follow
91
votes
18
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60k
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102
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30
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60k
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25 follow
updated 11 months ago by
Ram
39k
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written 13.3 years ago by
Biostar User
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1.0k
155
votes
24
replies
59k
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19 follow
updated 11 months ago by
Ram
39k
•
written 10.3 years ago by
Nicolas Rosewick
10k
148
votes
35
replies
59k
views
33 follow
Tutorial:
Tools For Metagenomic Data Analysis
328
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54
replies
58k
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45 follow
updated 8 months ago by
Kevin Blighe
85k
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written 13.2 years ago by
brentp
24k
91
votes
25
replies
58k
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18 follow
updated 9 months ago by
Michael
52k
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written 12.3 years ago by
Jarretinha
3.4k
62
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22
replies
58k
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16 follow
49
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20
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57k
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14 follow
updated 9 months ago by
Ram
39k
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written 11.0 years ago by
Ashutosh Pandey
12k
128
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33
replies
56k
views
19 follow
1
vote
6
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55k
views
74
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updated 7 months ago by
Pierre Lindenbaum
155k
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written 10.3 years ago by
lyz10302012
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430
80
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2
replies
54k
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updated 3 months ago by
Ram
39k
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written 10.0 years ago by
Eric Normandeau
11k
129
votes
22
replies
52k
views
15 follow
updated 4 days ago by
Kevin Blighe
85k
•
written 5.6 years ago by
Mike
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1.8k
30
votes
8
replies
52k
views
7 follow
updated 11 months ago by
Ram
39k
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written 9.1 years ago by
komal.rathi
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4.1k
145
votes
34
replies
52k
views
17 follow
28
votes
21
replies
52k
views
9 follow
77
votes
27
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51k
views
20 follow
updated 9 months ago by
Johan Zicola
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70
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written 9.5 years ago by
Ram
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180
75
votes
22
replies
50k
views
17 follow
56
votes
22
replies
50k
views
14 follow
updated 11 months ago by
Alex Reynolds
35k
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written 10.3 years ago by
Jordan
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1.2k
48
votes
19
replies
50k
views
11 follow
1.2k
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206
replies
50k
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108 follow
updated 8 days ago by
Raony Guimarães
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1.2k
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written 12.2 years ago by
Jeremy Leipzig
21k
45
votes
11
replies
49k
views
10 follow
updated 10 months ago by
Ram
39k
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written 7.4 years ago by
nash.claire
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470
0
votes
3
replies
48k
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Tutorial:
Installation VMD on LINUX_64
updated 9 weeks ago by
Ram
39k
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written 7.0 years ago by
Hassan Rasouli
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10
45
votes
3
replies
48k
views
65
votes
9
replies
48k
views
7 follow
66
votes
19
replies
47k
views
17 follow
updated 8 days ago by
Sara
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10
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written 10.3 years ago by
14134125465346445
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3.6k
34
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5
replies
46k
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112
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24
replies
45k
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17 follow
32
votes
19
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44k
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11 follow
updated 5 months ago by
Ram
39k
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written 10.0 years ago by
hicsuntdrac0nis
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240
125
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46
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44k
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20 follow
146
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69
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19 follow
updated 9 weeks ago by
k001
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10
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written 5.5 years ago by
Kevin Blighe
85k
46
votes
15
replies
44k
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11 follow
updated 8 months ago by
beausoleilmo
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530
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written 6.9 years ago by
MAPK
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2.0k
48
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4
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44k
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updated 9 months ago by
sonsunjirachote
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0
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written 12.8 years ago by
Austinlew
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310
77
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18
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44k
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13 follow
updated 10 months ago by
Dan
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0
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written 13.0 years ago by
Science_Robot
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1.1k
27
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15
replies
44k
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31
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7
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43k
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6 follow
updated 11 months ago by
Ram
39k
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written 8.3 years ago by
Tom Harrop
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170
9
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7
replies
43k
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32
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10
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43k
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8 follow
updated 7 months ago by
Ram
39k
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written 10.3 years ago by
Nicolas Rosewick
10k
117
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74
replies
42k
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40 follow
31
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11
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42k
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9 follow
294
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27
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42k
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33 follow
updated 10 months ago by
Ram
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written 7.4 years ago by
CandiceChuDVM
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2.4k
51
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19
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42k
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updated 3 months ago by
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39k
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written 11.1 years ago by
Sukhi Singh
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26
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9
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41k
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116
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66
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41k
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20 follow
39
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17
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41k
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updated 4 months ago by
Ram
39k
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written 11.0 years ago by
Federico Giorgi
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700
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7
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41k
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updated 5 months ago by
Ram
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bsmith030465
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230
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4
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41k
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updated 8 months ago by
Ram
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written 7.8 years ago by
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70
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11
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40k
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56
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Comment: conda: command not found: gatk.
by
bestone
▴
10
oops I didn't know I was going to evaluate them there, thanks for the warning, now I will evaluate them all. pls, could you pls with this i…
Comment: conda: command not found: gatk.
by
Pierre Lindenbaum
155k
> how about all your previous questions ? take a time to validate the good answers
Comment: conda: command not found: gatk.
by
bestone
▴
10
I was using gatk before, but conda env create -n gatk -f gatkcondaenv.yml didn't run this command, so I wanted to delete gatk and install t…
Comment: conda: command not found: gatk.
by
Pierre Lindenbaum
155k
how about all your previous questions ? take a time to validate the good answers (green mark on the left).
https://www.biostars.org/p/9565…
Answer: No @hd header returned in sam file when running bwa mem
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Pierre Lindenbaum
155k
the HD header is not generated by bwa, but you can add it using awk:
bwa (...) | awk '(NR==1) {printf("@HD\tVN:1.6\tSO:unknown\n");}{…
Comment: Ensembl vep singularity
by
Kiran
▴
80
Hi I also pulled SIF image from docker,, Now how do i execute the VEP from singularity ?
Answer: No @hd header returned in sam file when running bwa mem
by
GokalpC
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80
Your sam file is not coordinate sorted or converted to a bam. @HD tags come after a secondary tool such as samtools view or sort.
ANGSD…
Comment: Mapping a predicted sequence to a genome
by
Mensur Dlakic
★
23k
It may or may not, depending on the exact organism. For example, baker's yeast has introns but not many, and most genes in its genome don't…
Comment: Mapping a predicted sequence to a genome
by
Andy
•
0
Thank you for your answer! If the organism I am studying has introns, will blastn still be sufficient?
Answer: Mapping a predicted sequence to a genome
by
Mensur Dlakic
★
23k
If we are talking about organisms without introns, it is very simple. A tool to use is `tblastn` which can be accessed from the [**main BLA…
Comment: How to get information about promoter from bulk-RNAseq?
by
rfran010
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170
I'll just add what I did with my own dataset of ribo depleted RNA-seq:
I took predicted enhancer-promoter interaction datasets from UCSC a…
Answer: How to get information about promoter from bulk-RNAseq?
by
rfran010
▴
170
What type of RNA-seq data do you have?
With polyA, I think it will be hard to incorporate enhancer info without additional datasets.
…
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