Limit : all time
all time today this week this month this year
1,000 results • Page 2 of 20
Sort: Views
Rank Views Votes Replies
158
votes
40
replies
79k
views
26 follow
Multiline Fasta To Single Line Fasta
sequence fasta
updated 6 months ago by 37k • written 11.3 years ago by ▴ 240
82
votes
13
replies
78k
views
7 follow
Number of mapped reads from BAM file
bam sam reads mapping
updated 3 months ago by 37k • written 7.5 years ago by ★ 2.6k
105
votes
45
replies
77k
views
30 follow
How To Extract A Sequence From A Big (6Gb) Multifasta File ?
fasta
updated 28 days ago by ▴ 10 • written 10.2 years ago by ▴ 320
70
votes
19
replies
77k
views
13 follow
How To Get Ensembl Id (Gene, Transcript, Protein) Mapping Information?
ensembl identifiers mapping
updated 15 months ago by ▴ 10 • written 11.9 years ago by ▴ 180
185
votes
43
replies
77k
views
29 follow
Drawing Chromosome Ideograms With Data
chromosome visualization ideogram
updated 23 days ago by 37k • written 12.5 years ago by ★ 1.6k
120
votes
8
replies
76k
views
GRCh37/38(NCBI) vs hg19/hg38(UCSC)
ncbi ucsc grch38 hg38
updated 8 months ago by 37k • written 8.0 years ago by ▴ 520
97
votes
31
replies
76k
views
18 follow
Best Way To Merge A Many Thousand Small Bam Files Into One Big Bam File?
bam picard samtools merge
updated 11 weeks ago by 37k • written 11.2 years ago by ★ 5.0k
76
votes
22
replies
76k
views
16 follow
How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Sequences In A Single File
next-gen sequencing fasta rna r perl
updated 4.3 years ago by ▴ 60 • written 11.0 years ago by ▴ 290
98
votes
16
replies
74k
views
15 follow
How Much Coverage Do We Need For An Rna-Seq Experiment?
rna-seq coverage
7.8 years ago by Obi Griffith 20k
33
votes
4
replies
74k
views
7 follow
Merging Bam Files
picard samtools
updated 3.4 years ago by ▴ 60 • written 10.7 years ago by ▴ 180
48
votes
11
replies
72k
views
8 follow
merge large amount of fastq files into a single one
ChIP-Seq fastq
updated 4 months ago by 37k • written 7.5 years ago by ▴ 210
132
votes
25
replies
71k
views
14 follow
Tutorial: Piping With Samtools, Bwa And Bedtools
unix samtools bwa bedtools
updated 5 months ago by 37k • written 10.4 years ago by ★ 4.2k
157
votes
62
replies
70k
views
37 follow
Selecting Random Pairs From Fastq?
random fastq sequence illumina code
updated 3 months ago by • 0 • written 11.5 years ago by 4.1k
123
votes
24
replies
69k
views
18 follow
Sequence Length Distribution From A Fastq File
sequence length fastq
updated 3.4 years ago by • 0 • written 9.4 years ago by ▴ 360
43
votes
25
replies
69k
views
10 follow
Will A Masters In Bioinformatics Help Me In Getting A Job?
career education
updated 11.5 years ago by ★ 1.4k • written 11.5 years ago by ▴ 50
235
votes
45
replies
68k
views
34 follow
What Is The Best Pipeline For Human Whole Exome Sequencing?
next-gen sequencing illumina exome human
updated 11.3 years ago by ▴ 50 • written 12.3 years ago by 4.8k
20
votes
2
replies
68k
views
Subsetting in R based on row name?
R
updated 6.5 years ago by 102k • written 6.5 years ago by ▴ 80
33
votes
17
replies
68k
views
14 follow
How To Draw A Heat Map For Gene Expression Data?
microarray heatmap
updated 3 months ago by 37k • written 11.3 years ago by ▴ 80
103
votes
12
replies
68k
views
7 follow
Bedtools Compare Multiple Bed Files?
bedtools intersect
updated 9.7 years ago by ▴ 690 • written 10.9 years ago by ★ 1.7k
89
votes
24
replies
67k
views
19 follow
Extract Sub-Set Of Regions From Vcf File
vcf tabix genome filter
updated 7 months ago by ▴ 120 • written 10.3 years ago by ▴ 820
40
votes
14
replies
67k
views
9 follow
Synonymous And Non-Synonymous Snps
snp
updated 4 months ago by 37k • written 11.7 years ago by ▴ 250
67
votes
18
replies
67k
views
17 follow
Project For A Beginner Bioinformatics Student
project java
updated 11 weeks ago by 37k • written 10.9 years ago by ▴ 230
122
votes
17
replies
67k
views
8 follow
What Are Phased And Unphased Genotypes?
genotyping genome
updated 6 months ago by 37k • written 11.4 years ago by ▴ 370
24
votes
23
replies
67k
views
7 follow
Multiple Histograms In One Plot
r
updated 9 months ago by 37k • written 9.3 years ago by ★ 1.7k
15
votes
12
replies
66k
views
8 follow
BLAST Database error: No alias or index file found for nucleotide database
blast blastn sift makeblastdb
updated 6 weeks ago by • 0 • written 7.9 years ago by ▴ 310
193
votes
44
replies
66k
views
33 follow
Tutorial: Analysing Microarray Data In Bioconductor
tutorial bioconductor microarray analysis tutorial Tutorial
updated 7 days ago by 37k • written 10.0 years ago by 20k
1
vote
2
replies
66k
views
"SyntaxError: unexpected EOF while parsing " IN PYTHON 3.7
PYTHON
updated 18 months ago by 94k • written 2.4 years ago by • 0
136
votes
21
replies
66k
views
18 follow
Database Of Tumor Suppressors And/Or Oncogenes
cancer gene database oncogene tumor
24 months ago by Malachi Griffith 19k
182
votes
50
replies
65k
views
41 follow
How To Remove The Same Sequences In The Fasta Files?
fasta sequence duplicates
updated 1 day ago by 37k • written 11.9 years ago by ▴ 320
22
votes
2
replies
65k
views
How Can I Make A Bed File?
bed
updated 11.0 years ago by ▴ 260 • written 11.0 years ago by ▴ 580
74
votes
13
replies
64k
views
10 follow
Tutorial: Machine Learning For Prediction of Relapse in Cancer - Part 2 - Building A Random Forest Classifier
r cancer classification tutorial Tutorial
updated 4.1 years ago by 37k • written 8.9 years ago by ★ 1.2k
40
votes
15
replies
62k
views
14 follow
Converting Affymetrix Probes To Gene Ids
affymetrix conversion entrez
updated 5 months ago by 37k • written 9.2 years ago by ▴ 140
72
votes
16
replies
62k
views
10 follow
Tutorial: How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
samtools bcftools htslib Tutorial
updated 9 months ago by • 0 • written 4.2 years ago by ▴ 490
59
votes
15
replies
62k
views
9 follow
BAM/SAM to FASTA conversion
sam bam
updated 5 months ago by 37k • written 7.7 years ago by ★ 1.4k
40
votes
7
replies
62k
views
Clustering Data (Rna-Seq) Using R To Produce A Heatmap
r rna heatmap clustering gene
updated 3 months ago by 37k • written 10.9 years ago by ▴ 450
110
votes
24
replies
62k
views
12 follow
Is My Bam File Sorted ?
bam next-gen sequencing sort
updated 5.5 years ago by ▴ 160 • written 11.7 years ago by 149k
35
votes
9
replies
62k
views
8 follow
Minor allele frequency calculation
SNP next-gen
updated 4 months ago by 37k • written 7.9 years ago by ▴ 50
19
votes
8
replies
61k
views
6 follow
Pheatmap Annotation
r heatmap
updated 7.1 years ago by ▴ 540 • written 9.6 years ago by ▴ 80
51
votes
15
replies
60k
views
15 follow
Any Recommendations For Software For Drawing Plasmid Maps?
visualization software
updated 5 months ago by 37k • written 11.3 years ago by ▴ 70
25
votes
5
replies
60k
views
7 follow
Rpkm Calculation For Genes
rpkm rna-seq
updated 10.0 years ago by 13k • written 10.0 years ago by ▴ 270
20
votes
15
replies
60k
views
12 follow
Python Script To Translate Rna Sequences To Protein Sequences
python biopython translation
updated 9.1 years ago by ▴ 50 • written 12.0 years ago by ▴ 70
51
votes
18
replies
59k
views
10 follow
Extract User Defined Region From An Fasta File
sequence fasta
updated 5.2 years ago by ▴ 30 • written 11.2 years ago by ▴ 290
48
votes
13
replies
59k
views
9 follow
Sequence Number Count In Fastq.Gz File
counts sequence fastq
updated 9 months ago by 37k • written 11.3 years ago by ★ 1.7k
102
votes
30
replies
59k
views
25 follow
Tools To Find Gene Ontology Term Enrichment
gene enrichment tool
updated 3 months ago by 37k • written 12.6 years ago by ★ 1.0k
36
votes
14
replies
58k
views
9 follow
What Is The Difference Between Hg18 And Hg19?
genome hg hg
updated 10.6 years ago by 13k • written 10.6 years ago by ▴ 170
2
votes
10
replies
58k
views
R: remove rows by a list of rownames
R
updated 5 months ago by 37k • written 7.7 years ago by ▴ 50
152
votes
24
replies
58k
views
19 follow
Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
splicing tools rna-seq alternative-splicing
updated 11 weeks ago by 37k • written 9.6 years ago by 9.9k
17
votes
6
replies
58k
views
Turn Off Blast Search On Reverse Complement Strand In Blastn
sequence blast
updated 2.1 years ago by • 0 • written 12.6 years ago by ★ 1.3k
53
votes
4
replies
56k
views
What is difference between soft-clipped and hard-clipped in SAM specification?
sequence next-gen-sequencing
updated 7 months ago by 37k • written 7.9 years ago by ▴ 780
7
votes
3
replies
56k
views
what is the difference between single end and paired end in sequencing
RNA-Seq
updated 11 months ago by 37k • written 8.3 years ago by ▴ 590
1,000 results • Page 2 of 20
Recent Votes
Answer: "RNA-seq by Example" Differential Gene Expression Error
Answer: "RNA-seq by Example" Differential Gene Expression Error
Answer: Microarray DEG analysis visualisation
C: differential expression analysis with DESeq2 & edgeR
Answer: Are alternative splicing analysis and differential expression analysis of RNA-se
differential expression analysis with DESeq2 & edgeR
Answer: Low alignment score for microRNA
Recent Locations • All
China, 1 minute ago
China, 1 minute ago
Japan, 4 minutes ago
India, 5 minutes ago
South Korea, 7 minutes ago
Singapore, 8 minutes ago
United Arab Emirates, 9 minutes ago
Recent Awards • All
Scholar to GenoMax 120k
Popular Question to Kasthuri ▴ 290
Scholar to v.berriosfarias ▴ 90
Scholar to Mensur Dlakic ★ 20k
Popular Question to Raygozak ★ 1.4k
Teacher to ATpoint 65k
Scholar to LChart 840
Recent Replies
Comment: combine headers from two fata files by emiliomastriani ▴ 30
Thanks iraun. The merger line is perfect.
Comment: My ensembl requests are suddenly very slow - why? by ngarber ▴ 50
No need, that can't be the problem because it doesn't always die at that particular ID - sometimes it dies after only a couple! It never ge…
Comment: Convert Gene Ensemble IDs to Gene Symbols on R by igor 13k
Novel genes used to be assigned temporary cryptic placeholder symbols like AC010680.1 or LINC02050 or C1orf43. They recently stopped doing …
Comment: "RNA-seq by Example" Differential Gene Expression Error by Jeremy ▴ 590
Got it. I missed that update. Thanks a lot!
Comment: My ensembl requests are suddenly very slow - why? by GenoMax 120k
Perhaps there is an error in the compara database for that entry. Can you remove that and see if your job proceeds?
Comment: My ensembl requests are suddenly very slow - why? by ngarber ▴ 50
It shows as error 503: "service unavailable" when I click that link... also, here's a strange thing, I just tried from another internet con…
Answer: Kraken 2 example txt files by Istvan Albert 94k
There is a new paper out on Kraken 2, they ought to have some results: * Metagenome analysis using the Kraken software suite https://…
Comment: My ensembl requests are suddenly very slow - why? by GenoMax 120k
That ID does have homologs available: https://usa.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000185104;r=1:50437028-509…
Answer: "RNA-seq by Example" Differential Gene Expression Error by GenoMax 120k
You create the `design.csv` file using an editor in step 3 of the step-by-step process. It needs to contain the following: sample,co…
Comment: Dramatic decrease of mapping efficiency between Bwameth and Bismark by reza.jabal ▴ 560
What model organism are you using in your experiment? Human, model organism or non-model organism?
Comment: Ensembl Homology REST requests - possible to download whole database and query l by ngarber ▴ 50
So for looking at homologs of human proteins, do I want the following file? http://ftp.ensembl.org/pub/current_compara/conservation_sc…
Comment: My ensembl requests are suddenly very slow - why? by ngarber ▴ 50
The requests.get() method is giving me the status code 200 (OK) when I invoke response.status_code and slowly iterates over my list of IDs …
Answer: My ensembl requests are suddenly very slow - why? by GenoMax 120k
This question is probably not easily answerable. It is possible that Ensembl server is simply overloaded at the moment and you are feeling …
Comment: CNVKIT import errors by GenoMax 120k
Please use `conda` to do the installation. A basic tutorial is available here to use `conda` (use the part for `conda`): https://www.biosta…
Comment: CNVKIT import errors by ptoru001 • 0
hi all i am having similar errors with installation of cnvkit (for mac)...and cannot seem to figure it out...would anyone kindly please hel…
Traffic: 964 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6