Limit : this year
all time today this week this month this year
1,000 results • Page 4 of 20
Sort: Votes
Rank Views Votes Replies
65
votes
26
replies
18k
views
13 follow
Forum: Macosx For Bioinformatics?
linux
updated 6 months ago by 40k • written 9.8 years ago by 11k
65
votes
9
replies
48k
views
7 follow
Tutorial: Reference Assembly - Mapping Reads To A Reference Genome
reference samtools mapping bwa
updated 7 months ago by 40k • written 10.2 years ago by ★ 3.0k
64
votes
24
replies
2.5k
views
12 follow
Forum: How much I must feel useless?
machine-learning Programming statistics
updated 3 months ago by 40k • written 5.0 years ago by ▴ 80
64
votes
29
replies
15k
views
15 follow
Forum: Fundamentals Of Designing Biological Databases?
database
updated 7 months ago by 40k • written 12.9 years ago by ▴ 130
64
votes
8
replies
7.9k
views
7 follow
Forum: Isaac Asimov Accurately Predicts Woes Of Bioinformatician
bioinformatician
updated 6 months ago by 40k • written 10.4 years ago by 20k
64
votes
9
replies
102k
views
10 follow
Blog: Gene expression units explained: RPM, RPKM, FPKM and TPM
gene-expression RNA-Seq
updated 7 months ago by 40k • written 6.0 years ago by ★ 2.1k
64
votes
19
replies
21k
views
12 follow
What Ngs Read Simulators Are Available For Paired-End Data?
next-gen sequencing fastq simulation paired
updated 10 months ago by 40k • written 13.1 years ago by 12k
64
votes
5
replies
7.0k
views
10 follow
Tutorial: Informatics of RNA-Seq.
next-gen RNA-Seq
updated 11 months ago by 40k • written 8.1 years ago by 12k
64
votes
26
replies
12k
views
7 follow
Tutorial: Parallel processing in R
biocparallel mclapply foreach R
updated 6 months ago by 40k • written 6.0 years ago by 86k
63
votes
28
replies
3.4k
views
11 follow
Forum: Bioinformatics analyses & errors: need for better post-publication tools?
next-gen RNA-Seq
updated 5 months ago by 40k • written 7.4 years ago by ★ 1.2k
63
votes
25
replies
14k
views
12 follow
Tool: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
fastq SRA
updated 10 weeks ago by • 0 • written 4.6 years ago by ★ 1.3k
63
votes
9
replies
3.7k
views
Forum: Should The "Post Closing" Option Exist? Vote Now!
meta
updated 6 months ago by 40k • written 10.3 years ago by 98k
63
votes
11
replies
15k
views
9 follow
Forum: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
programming
updated 6 months ago by 40k • written 10.2 years ago by 19k
63
votes
27
replies
26k
views
18 follow
Data Too Big To Be Stored In Memory: Common Options
python
updated 6 months ago by 40k • written 10.8 years ago by ▴ 720
62
votes
22
replies
60k
views
16 follow
How To Convert Gencode Gtf Into Bed Format ?
gtf bed
updated 9 months ago by • 0 • written 10.9 years ago by ★ 1.5k
62
votes
16
replies
33k
views
18 follow
Job: Bioinformatics Jobs You Can Do From Home?
python education
updated 7 months ago by 40k • written 13.0 years ago by ▴ 290
62
votes
24
replies
40k
views
12 follow
How to extract unique mapped results from Bowtie2 bam results?
alignment
updated 8 months ago by 40k • written 9.3 years ago by ▴ 170
62
votes
14
replies
189k
views
9 follow
How To Deal With Duplicate Row Names Error In R
r
updated 4 months ago by 11k • written 10.6 years ago by ▴ 900
62
votes
95
replies
17k
views
8 follow
How to extract the list of genes from TCGA CNV data
TCGA CNV genes
updated 7 months ago by ▴ 10 • written 5.4 years ago by ▴ 260
62
votes
17
replies
33k
views
7 follow
how to remove multiallelic from VCF
SNP
updated 7 months ago by 40k • written 8.4 years ago by ▴ 520
61
votes
6
replies
9.2k
views
Tutorial: Minimum Standards For Bioinformatics Command Line Tools
command-line
updated 6 months ago by 40k • written 10.1 years ago by 9.7k
61
votes
15
replies
13k
views
Tutorial: Which human reference genome should I use?
assembly genome alignment
updated 3 months ago by 40k • written 4.9 years ago by 16k
61
votes
14
replies
19k
views
13 follow
Why is Hadoop not used a lot in bio-informatics?
hadoop
updated 6 months ago by 40k • written 8.9 years ago by ★ 5.2k
61
votes
16
replies
7.1k
views
14 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 8 months ago by ★ 1.3k • written 2.9 years ago by 8.2k
61
votes
51
replies
21k
views
9 follow
Tool: Efficiently process (view, analize, clip ends, convert, demultiplex, dereplicate) SFF/FastQ files
sff sequence fastq next-gen
updated 12 weeks ago by 40k • written 9.4 years ago by ▴ 790
61
votes
70
replies
12k
views
21 follow
Forum: Biostar 2.0 released
meta biostars
updated 7 months ago by 40k • written 9.4 years ago by 98k
61
votes
29
replies
6.8k
views
14 follow
Best bioinfo one-liners?
linux
updated 8 months ago by 40k • written 8.4 years ago by 4.1k
60
votes
3
replies
32k
views
Paired-end reads - what is what?
RNA-Seq
updated 8 months ago by 40k • written 8.3 years ago by ▴ 220
60
votes
28
replies
7.5k
views
27 follow
Forum: Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 6 months ago by 40k • written 9.0 years ago by 98k
60
votes
2
replies
7.1k
views
Tutorial: Table Of Contents To All Review Paper Compilations On Biostar
papers
updated 7 months ago by 40k • written 11.1 years ago by 98k
60
votes
17
replies
32k
views
16 follow
Scientific Names In Blast Output And Databases
blast blast+
updated 8 months ago by 40k • written 10.2 years ago by ★ 2.1k
60
votes
18
replies
3.5k
views
10 follow
Are Super User Style Questions Appropriate In Biostar?
meta biostars
updated 7 months ago by 40k • written 13.2 years ago by ▴ 460
60
votes
12
replies
38k
views
10 follow
Get chromosome sizes from fasta file
genome ucsc
updated 10 months ago by • 0 • written 7.7 years ago by ▴ 710
60
votes
14
replies
11k
views
16 follow
Forum: Interesting bioinformatics blogs (2017 edition)
blogs
updated 6 months ago by 40k • written 6.5 years ago by 47k
60
votes
52
replies
41k
views
23 follow
Tutorial: Creating Interactive Volcano Plots with R and Plot.ly
plotly R volcano-plot
updated 6 months ago by 40k • written 7.0 years ago by ★ 3.3k
60
votes
21
replies
2.8k
views
14 follow
Reproduce the article "The complete sequence of a human genome."
genome assembly
updated 19 days ago by 53k • written 21 days ago by ▴ 60
59
votes
43
replies
19k
views
18 follow
Tutorial: Polish PacBio assembly with latest PacBio tools : an affordable solution for everyone
pbalign pacbio arrow smrt-limk
updated 6 months ago by 40k • written 6.0 years ago by ★ 1.4k
59
votes
31
replies
4.1k
views
12 follow
News: Example of how bioinformaticians can publish in Scientific Reports (by nature publishing group) using publicly available NGS data
publication NGS
updated 5 months ago by 40k • written 6.7 years ago by 10k
58
votes
25
replies
38k
views
15 follow
Tutorial: Protocol To Downlad TCGA Data From GDC
GDC methylation TCGA
updated 6 months ago by 40k • written 7.2 years ago by ★ 9.3k
57
votes
15
replies
5.6k
views
9 follow
Forum: Good practices while dealing with very large datasets
Big-Data Programming
updated 4 months ago by 40k • written 6.4 years ago by ★ 1.1k
57
votes
19
replies
27k
views
6 follow
Forum: Attention: Bowtie2 And Multiple Hits
next-gen bowtie mapping
updated 6 months ago by 40k • written 10.9 years ago by 10k
57
votes
15
replies
4.4k
views
9 follow
Forum: Entice Biologists To Learn R
r
updated 7 months ago by 40k • written 12.0 years ago by 5.3k
57
votes
9
replies
5.3k
views
14 follow
Forum: Handbooks for Bioinformatics Ninjas
gallery
updated 5 months ago by 40k • written 7.4 years ago by ★ 9.3k
57
votes
43
replies
15k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 6 months ago by 40k • written 4.7 years ago by 10k
56
votes
22
replies
23k
views
7 follow
Batch correction in DESeq2
DESeq2 Batch Effect Combat
updated 6 months ago by 86k • written 3.9 years ago by ▴ 510
56
votes
23
replies
4.4k
views
10 follow
Tool: ASCIIGenome: Text Only Genome Viewer!
terminal genome-browser java ASCIIGenome
updated 12 weeks ago by 40k • written 7.2 years ago by 14k
56
votes
4
replies
66k
views
What is difference between soft-clipped and hard-clipped in SAM specification?
sequence next-gen-sequencing
updated 11 months ago by 40k • written 8.9 years ago by ▴ 800
56
votes
7
replies
7.5k
views
8 follow
What is the best way to combine machine learning algorithms for feature selection such as Variable importance in Random Forest with differential expr…
RNA-Seq rna-seq
updated 5 weeks ago by 86k • written 5.5 years ago by ▴ 150
56
votes
19
replies
3.7k
views
9 follow
Forum: How to apply for a job
resume cover-letter application CV
updated 4 months ago by 40k • written 6.2 years ago by 23k
56
votes
25
replies
3.6k
views
8 follow
Forum: Am I crazy, or are most published RNA-seq studies vastly underpowered?
sample-size statistical-power RNA-Seq
updated 3 months ago by 40k • written 3.1 years ago by ▴ 210
1,000 results • Page 4 of 20
Recent Votes
C: bowtie2 piped to samtools created many samtools.tmp.bam files, how to get the si
What is the difference between norm --multiallelics -any versus --atomize?
Answer: What is the difference between norm --multiallelics -any versus --atomize?
A: How To Extract A Sequence From A Big (6Gb) Multifasta File ?
A: How to extract a sequence below a fasta header (">") from a fasta file ?
A: How to extract a sequence below a fasta header (">") from a fasta file ?
A: How To Extract A Sequence From A Big (6Gb) Multifasta File ?
Recent Locations • All
United Kingdom, 1 minute ago
Deutschland, 4 minutes ago
Italy, 5 minutes ago
Denmark, 6 minutes ago
Somewhere, 7 minutes ago
Paris, 7 minutes ago
Germany, 8 minutes ago
Recent Awards • All
Popular Question to zx8754 11k
Popular Question to xiaoguang ▴ 120
Popular Question to luffy ▴ 30
Teacher to swbarnes2 13k
Popular Question to blz ▴ 10
Popular Question to Ram 40k
Popular Question to mohammadhassanj ▴ 260
Recent Replies
Comment: Dealing with transcriptome sequences that are smaller than their respective gene by langziv ▴ 50
Thanks. Is there an approach or a guideline to filter such sequences?
Answer: Assistance with Fungal Genome Annotation Using Maker and BLAST by Juke34 8.2k
There are tools to combine output from blast in tabulated format like in the example here [enter link description here][1](see functional …
Answer: Importance of Data Structures for Bioinformatics? by xiaoguang ▴ 120
Bioinformatics is a cross-disciplinary research subject and learning anything is a plus for future participation in related jobs. But right…
Answer: How to find positions with higher depth relative to their surroundings by xiaoguang ▴ 120
I saw you want to get regions that have significantly higher depth than their surroundings; you must get a p-value to show significant as w…
Comment: how to calculate BAF and LRR from VCF or BCF files? by xiaoguang ▴ 120
Hi, The ASCAT new version has introduced a new function called `ascat.prepareHTS`, which can be used to prepare all files that are required…
Comment: GERP++ (gerpcol) error on a test data by Diana • 0
I solved the problem in the end. I was under the impression that the reference sequence had to be provided in a separate fasta file: c…
Answer: How to find positions with higher depth relative to their surroundings by d-cameron ★ 2.9k
The usual way of doing this is to use one of the many existing copy number variant caller. Doing this yourself is both a) complicated to do…
Answer: How to retrieve LoF and missense variants in WES data? by luffy ▴ 30
@ _quantum_girl_, as Pierre mentioned, you can annotate your VCF with [snpEff][1] or [ensembl vep][2] once you annotated you could filter n…
Comment: Adding a control sample to bulk RNA-seq by Chris ▴ 180
Thank you so much! It is from the same lab but from another project. Would you please explain about combining the counts together a little …
Answer: Importance of Data Structures for Bioinformatics? by d-cameron ★ 2.9k
> how important are Data Structures to multi-omic / bioinformatic analysis Generally speaking, they're not critical if you are using an …
Answer: Recommended order of operations for identifying the genomic location and copy-nu by dk0319 ▴ 70
Update: The above workflow was successful, in that contig_1719 does contain approximately 4 copies of my insert based on searching pieces o…
Comment: manhattan plot with vcf information by sooni ▴ 10
I want to find out specific genes using the manhattan plot. I divide the patients into two groups, controls and patients, and try to identi…
Comment: Importance of Data Structures for Bioinformatics? by dsull ★ 4.6k
If you don't want to hurt your GPA, why not just take the course pass/fail or, if that's not an option, simply audit it? I doubt anyone wi…
Comment: How to DESeq2 using miRNA data obtained using TCGAbiolinks by swbarnes2 13k
miRNAs are rather small, and your typical RNASeq library prep will remove small sequences. Are you sure that the data you are trying to ge…
Comment: Inflated GWAS test statistic after merging multiple batches of genotype dataset by LauferVA 3.7k
even these measures will very often not fix the problem in the context of a problem of a problem of perfect separation such as OP describes.
Traffic: 2670 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6