Limit : this year
all time today this week this month this year
1,000 results • Page 3 of 20
Sort: Votes
Rank Views Votes Replies
89
votes
31
replies
12k
views
23 follow
Best Graphics Gallery Or Blogs For Bioinformatics Use
graphs visualization genomics
updated 7 months ago by 38k • written 11.0 years ago by ★ 1.5k
88
votes
24
replies
4.7k
views
10 follow
Forum: How To Be Helpful As A Biostar Moderator/Editor?
biostars
updated 5 weeks ago by 38k • written 10.1 years ago by 1.9k
88
votes
18
replies
57k
views
12 follow
Sequence length from Fasta
fasta
updated 3 months ago by 38k • written 8.4 years ago by ▴ 80
87
votes
16
replies
20k
views
15 follow
Are we tricking ourselves with batch effect correction?
combat batch-effect sva
updated 7 weeks ago by ▴ 20 • written 7.8 years ago by ★ 3.0k
87
votes
13
replies
19k
views
9 follow
What Do Different Bioinformatics Positions Mean?
career general
updated 5 weeks ago by 38k • written 13.0 years ago by ★ 1.6k
84
votes
16
replies
84k
views
9 follow
Number of mapped reads from BAM file
bam sam reads mapping
updated 4 months ago by ▴ 50 • written 7.9 years ago by ★ 2.6k
84
votes
22
replies
3.4k
views
12 follow
Forum: is fortran still used in bioinformatics?
FORTRAN R
updated 14 days ago by 38k • written 3.8 years ago by ▴ 180
83
votes
34
replies
15k
views
21 follow
Tutorial: Enrichment Analysis, Clustering and Scoring with pathfindR
active-subnetwork enrichment pathway R
updated 14 days ago by 38k • written 4.8 years ago by ★ 1.3k
83
votes
30
replies
5.5k
views
18 follow
Forum: Optimal design for bioinformatics "lab" space?
design lab-space
updated 8 months ago by 38k • written 7.9 years ago by 18k
82
votes
21
replies
14k
views
16 follow
Tutorial: Gene Set Enrichment Analysis
microarray enrichment RNA-Seq GSEA
updated 14 days ago by 38k • written 2.4 years ago by 2.9k
82
votes
28
replies
28k
views
19 follow
Tutorial: How to create a mutation landscape (waterfall) plot with GenVisR
BioConductor GenVisR Graphics R
updated 5 weeks ago by 38k • written 7.0 years ago by 20k
82
votes
19
replies
12k
views
8 follow
Future Directions In Bioinformatics
subjective career
updated 5 weeks ago by 38k • written 12.3 years ago by ★ 1.5k
82
votes
32
replies
6.4k
views
13 follow
Forum: Shall We Go Back To Stackexchange?
meta
updated 28 days ago by 38k • written 10.3 years ago by ★ 3.6k
81
votes
8
replies
7.8k
views
6 follow
Tutorial: Current Topics in Genome Analysis 2014 (collection of educational lectures)
workshop lectures genomics training
updated 17 days ago by 38k • written 8.8 years ago by 19k
81
votes
23
replies
11k
views
10 follow
Transform A Pipeline Of R Scripts Into A Web Application
webservice web pipeline galaxy
updated 10 months ago by 38k • written 12.6 years ago by 27k
81
votes
39
replies
6.0k
views
11 follow
News: State Of Biostar - Future Directions (January 2013)
biostars
updated 5 weeks ago by 38k • written 10.2 years ago by 97k
81
votes
21
replies
4.1k
views
16 follow
Forum: [UPDATE] Thrown into a Bioinformatics Position
bioinformatics
updated 6 days ago by 38k • written 6.8 years ago by ★ 3.2k
81
votes
21
replies
71k
views
13 follow
Tutorial: How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
bcftools samtools htslib
updated 5 weeks ago by ★ 2.9k • written 4.7 years ago by ▴ 530
80
votes
23
replies
4.3k
views
11 follow
Forum: Are we facing a bioinformatician shortage?
salary career
updated 14 days ago by 38k • written 8.4 years ago by ★ 3.0k
80
votes
34
replies
3.9k
views
11 follow
Forum: Authorship issues- how to resolve?
authorship
updated 11 weeks ago by 38k • written 7.8 years ago by ▴ 520
79
votes
2
replies
53k
views
Tutorial: How To Ask Good Questions On Technical And Scientific Forums
how-to
updated 24 days ago by 38k • written 9.7 years ago by 11k
79
votes
22
replies
81k
views
16 follow
How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Sequences In A Single File
next-gen sequencing fasta rna r perl
updated 4 months ago by 38k • written 11.4 years ago by ▴ 290
78
votes
41
replies
28k
views
24 follow
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm rna-seq bioconductor
updated 4 months ago by • 0 • written 9.4 years ago by ★ 7.7k
78
votes
31
replies
5.7k
views
14 follow
Forum: Do Bad Questions Even Exist?
biostars general education
updated 5 weeks ago by 38k • written 12.1 years ago by 10k
77
votes
8
replies
12k
views
13 follow
Which program, tool, or strategy do you use to visualize genomic rearrangements?
fusion-genes visualizations rearrangements
updated 6 months ago by 38k • written 7.5 years ago by ★ 1.1k
77
votes
27
replies
49k
views
20 follow
How To Write Data In A Granges Object To A Bed File.
bed
updated 6 months ago by ▴ 70 • written 9.3 years ago by ▴ 180
77
votes
22
replies
21k
views
14 follow
Assessing The Quality Of De Novo Assembled Data
assembly next-gen
updated 5 months ago by 38k • written 10.8 years ago by ★ 2.6k
77
votes
18
replies
43k
views
13 follow
Bioinformaticist Vs. Bioinformatician
subjective
updated 7 months ago by • 0 • written 12.8 years ago by ★ 1.1k
76
votes
86
replies
25k
views
20 follow
Tool: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates.
compression bbmap clumpify pigz storage Tool
updated 3 months ago by 127k • written 6.3 years ago by 18k
75
votes
70
replies
16k
views
18 follow
Tutorial: Clustering of DAVID gene enrichment results from gene expression studies
enrichment david
updated 9 days ago by 38k • written 5.1 years ago by 84k
75
votes
14
replies
11k
views
10 follow
Tool: karyoploteR: uncircle your genomes
R Tool dataviz karyoploteR NGS
updated 11 months ago by • 0 • written 5.8 years ago by ★ 3.4k
75
votes
22
replies
49k
views
17 follow
How To Download All Sra Samples At Once ?
geo sra
updated 14 minutes ago by 38k • written 9.1 years ago by ★ 1.5k
74
votes
24
replies
52k
views
16 follow
How To Sort Bed Format File
bed
updated 4 months ago by 153k • written 10.1 years ago by ▴ 430
74
votes
13
replies
65k
views
10 follow
Tutorial: Machine Learning For Prediction of Relapse in Cancer - Part 2 - Building A Random Forest Classifier
r cancer classification
updated 4 months ago by 38k • written 9.3 years ago by ★ 1.2k
74
votes
14
replies
28k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 9 months ago by 38k • written 12.8 years ago by 4.5k
73
votes
25
replies
97k
views
14 follow
How to count fastq reads
sequence next-gen fastq reads
updated 8 months ago by 38k • written 7.9 years ago by ▴ 250
73
votes
14
replies
14k
views
15 follow
Tutorial: List Of Bioinformatics Books
books
updated 6 weeks ago by 38k • written 9.8 years ago by 9.5k
72
votes
18
replies
6.7k
views
17 follow
Forum: What Is One Book Every Bioinformatician Should Read?
books
updated 24 days ago by 38k • written 9.7 years ago by 7.7k
72
votes
20
replies
24k
views
11 follow
Parsing Ncbi Taxonomic Tree?
ncbi taxonomy python tree
updated 3 months ago by 38k • written 11.4 years ago by ▴ 350
72
votes
60
replies
23k
views
16 follow
Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
1000genomes PLINK PCA VCF
updated 5 weeks ago by 38k • written 5.5 years ago by 84k
72
votes
48
replies
15k
views
15 follow
Tutorial: For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Threshold?
ngs alignment bwa
updated 28 days ago by 38k • written 10.1 years ago by 33k
72
votes
28
replies
5.2k
views
10 follow
Forum: Bioinformatics commercial services as a risk factor for scientific misconduct
commercial-services ethics misconduct
updated 8 months ago by 38k • written 8.2 years ago by ▴ 90
72
votes
48
replies
6.9k
views
18 follow
What Kind Of Bioinformatics Tutorials Would You Like To See Online?
education
updated 5 weeks ago by 38k • written 11.9 years ago by 13k
72
votes
12
replies
3.7k
views
7 follow
Does Pre-Publishing Open Source Algorithms Hurt Chances Of Getting Published?
publication algorithm
updated 8 months ago by 38k • written 11.5 years ago by ▴ 570
71
votes
71
replies
24k
views
17 follow
Tool: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and labeling
volcano plot ggplot2 ggrepel bioconductor Tool
updated 5 months ago by ▴ 20 • written 4.6 years ago by 84k
71
votes
17
replies
31k
views
14 follow
How to know that your RNA-seq is stranded or not?
RNA-Seq
updated 9 weeks ago by ★ 2.9k • written 8.9 years ago by ▴ 590
70
votes
19
replies
4.5k
views
13 follow
Forum: Thrown Into A Bioinformatics Position
computational-analysis
updated 8 months ago by 38k • written 7.5 years ago by ▴ 170
70
votes
20
replies
80k
views
15 follow
How To Get Ensembl Id (Gene, Transcript, Protein) Mapping Information?
ensembl identifiers mapping
updated 10 weeks ago by 38k • written 12.4 years ago by ▴ 180
70
votes
31
replies
24k
views
10 follow
Illumina Instrument Type from fastq?
fastq
updated 7 months ago by 127k • written 6.8 years ago by 6.5k
70
votes
16
replies
8.9k
views
11 follow
Creating A New Bioinformatics Unit
core career
updated 5 weeks ago by 38k • written 11.7 years ago by ▴ 790
1,000 results • Page 3 of 20
Recent Votes
Comment: bioinformatics problems solved by graphs data structure
Comment: bioinformatics problems solved by graphs data structure
Answer: How to analize multiple letters codes in COG IDs?
Answer: PCA in gene expression
Answer: PCA in gene expression
Comment: Enrichment analysis based on kegg for zebrafish
Question on number of possible alignments
Recent Locations • All
Canada, just now
New York, 1 minute ago
United States, 2 minutes ago
Hungary, 2 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 4 minutes ago
Turkey, 6 minutes ago
Republic of Ireland, 7 minutes ago
Recent Awards • All
Commentator to colindaven 4.6k
Guru to jv ★ 1.0k
Popular Question to Kumar ▴ 150
Popular Question to rebeliscu ▴ 50
Commentator to Pierre Lindenbaum 153k
Scholar to 100dustedclays ▴ 10
Popular Question to abdelmalek.benmeziane • 0
Recent Replies
Comment: bioinformatics problems solved by graphs data structure by lieven.sterck 14k
et mon français est assez bien pour comprendre ce que tu as écrit la ;-)
Comment: How to analize multiple letters codes in COG IDs? by Constanza • 0
Thanks for answering so fast, it was very helpful. I shouldn't pay much attention to if COGs are separated by a comma or not then. As long…
Comment: bioinformatics problems solved by graphs data structure by lieven.sterck 14k
well, because this is not you guys' private forum, there are other people participating (not native french speaking) , just to give a reaso…
Answer: How to get gene from PSIBLAST resuts by lieven.sterck 14k
what you likely will need to do: 1. get the ID of the protein that you are interested in (out of result from PSIBLAST) 2. lookup that ID…
Answer: How to analize multiple letters codes in COG IDs? by Mensur Dlakic ★ 23k
The meaning of individual letters is described in a well-known COG functional code: https://ecoliwiki.org/colipedia/index.php/Clusters_o…
Comment: How to find promoter sequence of a gene? by sunyeping ▴ 40
The organism is mice.
Answer: How to generate GFF/GTF file from cDNA transcipts FASTA file? by Pierre Lindenbaum 153k
BLAT your cDNAs to the reference. This should be a PSL file that can be converted to a psl->gff3 converter (e.g: https://github.com/gperte…
Comment: RNAseq: same reads + more complete scaffold = fewer DEGs? by Darked89 4.2k
You may try to check what happened with DEGs obtained using the 300 fragments assembly by getting the sequences of these genes and comparin…
Comment: ExomeDepth installation error by Medha • 0
Thanks, that did work. Also in next steps, there are some arguments like bam.files, I was wondering do we require to have multiple bam fil…
Comment: ExomeDepth installation error by jared.andrews07 ★ 14k
No idea, I don't use databricks. I'd read the docs, find a local expert to help you out, or contact their support, likely in that order.
Comment: ExomeDepth installation error by Medha • 0
Hi @jaredandrews07 thanks for reverting back. I am new to R and just want to make sure ExomeDepth is working for the first time. For the Rs…
Comment: Embedded stop codon in translated nucleotide sequences in DAMBE by Mensur Dlakic ★ 23k
It is not obvious to me what exact steps you did here, but here is what I do know: there will always be stop codons even in open reading fr…
Comment: Error with a function in ATAC-seq analysis by Chris ▴ 70
So you skip the GRanges()? Yes, no error anymore but I am not sure if that causes changing in downstream analysis.
Answer: ClusterProfiler enrichKEGG – remove organism name in plots? by jv ★ 1.0k
`stringr::str_remove` can remove " - Mus musculus (house mouse)" from the pathway names which are stored under `KEGGPATHID2NAME$to` in your…
Comment: Error with a function in ATAC-seq analysis by jv ★ 1.0k
run `union` on the data frames
Traffic: 2396 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6