93
votes
32
replies
30k
views
26 follow
92
votes
105
replies
34k
views
25 follow
updated 16 days ago by
Ram
38k
•
written 4.6 years ago by
Kevin Blighe
84k
92
votes
46
replies
10.0k
views
28 follow
updated 6 weeks ago by
Ram
38k
•
written 11.7 years ago by
Andra Waagmeester
3.2k
92
votes
20
replies
27k
views
13 follow
92
votes
5
replies
50k
views
updated 15 months ago by
Ram
38k
•
written 8.6 years ago by
QVINTVS_FABIVS_MAXIMVS
★
2.5k
92
votes
6
replies
33k
views
91
votes
10
replies
105k
views
11 follow
91
votes
20
replies
18k
views
15 follow
91
votes
25
replies
57k
views
18 follow
updated 6 months ago by
Michael Dondrup
52k
•
written 12.1 years ago by
Jarretinha
3.4k
90
votes
26
replies
37k
views
22 follow
90
votes
38
replies
129k
views
18 follow
90
votes
44
replies
57k
views
28 follow
89
votes
19
replies
30k
views
12 follow
updated 28 days ago by
Ram
38k
•
written 9.4 years ago by
Obi Griffith
20k
89
votes
21
replies
48k
views
13 follow
updated 9.3 years ago by
earonesty
▴
240
•
written 10.4 years ago by
siddharth.sethi5
▴
270
89
votes
31
replies
12k
views
23 follow
88
votes
32
replies
8.2k
views
11 follow
updated 12 months ago by
Ram
38k
•
written 8.4 years ago by
Pierre Lindenbaum
153k
88
votes
18
replies
58k
views
12 follow
88
votes
52
replies
45k
views
16 follow
updated 16 months ago by
BioNovice247
▴
10
•
written 5.4 years ago by
rachel.kubik12
▴
210
88
votes
24
replies
4.7k
views
10 follow
updated 6 weeks ago by
Ram
38k
•
written 10.1 years ago by
aidan-budd
1.9k
88
votes
24
replies
8.5k
views
14 follow
updated 6.2 years ago by
Biostar
20
•
written 12.7 years ago by
Gabriel Mitchell
▴
520
88
votes
36
replies
36k
views
15 follow
updated 9.1 years ago by
Leandro Lima
▴
960
•
written 12.5 years ago by
Ryan D
★
3.4k
87
votes
25
replies
49k
views
21 follow
87
votes
37
replies
48k
views
20 follow
87
votes
16
replies
20k
views
15 follow
updated 8 weeks ago by
madbadradscientist
▴
20
•
written 7.8 years ago by
Christian
★
3.0k
87
votes
13
replies
19k
views
9 follow
86
votes
11
replies
18k
views
8 follow
updated 12.7 years ago by
Larry_Parnell
16k
•
written 12.7 years ago by
brentp
24k
86
votes
29
replies
8.6k
views
9 follow
85
votes
52
replies
8.2k
views
31 follow
updated 2.3 years ago by
jerry
▴
130
•
written 13.0 years ago by
Jarretinha
3.4k
85
votes
19
replies
39k
views
17 follow
84
votes
22
replies
3.5k
views
12 follow
84
votes
12
replies
50k
views
9 follow
84
votes
16
replies
84k
views
9 follow
updated 4 months ago by
bhanu.chandra1
▴
50
•
written 8.0 years ago by
Prakki Rama
★
2.6k
84
votes
36
replies
17k
views
13 follow
updated 12 months ago by
Ram
38k
•
written 8.3 years ago by
David Langenberger
9.9k
83
votes
34
replies
15k
views
21 follow
83
votes
30
replies
5.5k
views
18 follow
updated 9 months ago by
Ram
38k
•
written 8.0 years ago by
Casey Bergman
18k
82
votes
21
replies
15k
views
16 follow
Tutorial:
Gene Set Enrichment Analysis
updated 20 days ago by
Ram
38k
•
written 2.5 years ago by
Hamid Ghaedi
2.9k
82
votes
28
replies
28k
views
19 follow
updated 6 weeks ago by
Ram
38k
•
written 7.1 years ago by
Obi Griffith
20k
82
votes
19
replies
12k
views
8 follow
82
votes
19
replies
17k
views
16 follow
82
votes
11
replies
28k
views
10 follow
updated 6.5 years ago by
shizhaojingszj
•
0
•
written 9.1 years ago by
amcrisan
▴
370
82
votes
32
replies
6.4k
views
13 follow
updated 4 weeks ago by
Ram
38k
•
written 10.3 years ago by
14134125465346445
★
3.6k
82
votes
13
replies
39k
views
7 follow
82
votes
21
replies
71k
views
13 follow
updated 5 weeks ago by
cmdcolin
★
2.9k
•
written 4.7 years ago by
otwtgin2010
▴
540
81
votes
8
replies
7.8k
views
6 follow
81
votes
23
replies
11k
views
10 follow
updated 11 months ago by
Ram
38k
•
written 12.7 years ago by
Giovanni M Dall'Olio
27k
81
votes
26
replies
11k
views
17 follow
81
votes
21
replies
4.1k
views
16 follow
81
votes
15
replies
22k
views
10 follow
updated 8.8 years ago by
jcsoellner
•
0
•
written 12.0 years ago by
Jason
▴
430
81
votes
39
replies
6.0k
views
11 follow
updated 6 weeks ago by
Ram
38k
•
written 10.2 years ago by
Istvan Albert
97k
80
votes
24
replies
9.9k
views
18 follow
updated 6.5 years ago by
Biostar
20
•
written 12.9 years ago by
Giovanni M Dall'Olio
27k
Recent Votes
Recent Locations •
All
India, 5 minutes ago
United States, 6 minutes ago
United States, 9 minutes ago
Boston, 18 minutes ago
United States, 20 minutes ago
South Korea, 22 minutes ago
Brazil, 23 minutes ago
Recent Awards •
All
Popular Question to
pavelasquezv
▴
50
Popular Question to
Anand Rao
▴
550
Scholar to
andres.firrincieli
3.2k
Popular Question to
chaco001
▴
10
Recent Replies
Answer: Align miRNA library (small RNA-seq) without trimming
by
Ming Tommy Tang
★
2.9k
bowtie 1 is good for short read < 50bp, how long is your read? bowtie2 is better for reads > 50 bp
Comment: Differences in RNAseq Variant Calling and Allele Specific Expression
by
afei
•
0
Hi!
I'm also confused by this. And the site (https://gatkforums.broadinstitute.org/gatk/categories/gatk-support-forum) is closed. Have you …
Comment: Variant caller reports a homozygous variant genotype, but more reads are associa
by
rebeliscu
▴
50
Indeed, I thought the quality might be a factor. Still, given the information, it seems odd to me that that call was made.
Thanks for you…
Answer: How can I use bcftools mpileup or an alternative to find ALL variants without an
by
cfos4698
▴
730
To generate a VCF file one would normally pipe the input of an `mpileup` command into an actual `call` command. For example:
```
bcftools …
Answer: PTM-aware protein folding / docking
by
Mensur Dlakic
★
23k
Your assumption is correct - AlphaFold pTM has nothing to do with post-translational modifications. See [**here**][1].
Not to discourage…
Answer: Admixture cv error
by
Declan
•
0
I had this issue today and was able to resolve it by changing the random seed Admixture uses by adding `-s time` (which sets the random see…
Answer: Total No of Genes of GENCODE Release 43
by
ahmad
•
0
The following is the correct code
gtf_43<-rtracklayer::import('gencode.v43.primary_assembly.annotation.gtf')
dtgtf_43<-data.frame(gtf_4…
Comment: Total No of Genes of GENCODE Release 43
by
ahmad
•
0
Hello,
thanks for replying, by mistake I paste the wrong code. the following is the corrected
gtf_43<-rtracklayer::import('gencode.v43…
Comment: Kallisto bustools for scRNA-seq
by
dsull
★
4.0k
I have no idea what that is besides a bunch of jumbled sequences. You'll need look up the structure of the reads / library from wherever yo…
Comment: Aberrant splicing in bulk RNAseq
by
dsull
★
4.0k
First thing: kallisto cannot interface with UMI-tools (kallisto doesn't use read headers and therefore you're stuck with "the kallisto way"…
Comment: Using Copy Number Alterations detected in other studies for the same tumor cell
by
lethalfang
▴
90
There is some somatic SV study on these HCC1395: https://doi.org/10.1186/s13059-022-02816-6.
There is also a CNA preprint from years ago b…
Comment: Somatic truth set
by
lethalfang
▴
90
Just in case things are hard to find, for the WGS/WES, these are the data (what the file names mean: https://sites.google.com/view/seqc2/ho…
Comment: How to get subset of a Seurat object based on metadata?
by
jv
★
1.0k
Hmm, not sure why `subset` doesn't match to '0:CD8 T cell' but maybe it's the ":"?
An alternative option is the following:
```
idx <- whi…
Comment: GO enrichment analysis
by
Jeremy
▴
780
g:Profiler has an Arabidopsis option:
[g:Profiler][1]
[1]: https://biit.cs.ut.ee/gprofiler/gost
Answer: Any tips in landing a bioinformatic job?
by
Carambakaracho
★
3.2k
The first job is a nightmare and you will need some luck. I understand you're looking for an industry offering. Unfortunately I've worked o…
Traffic: 1679 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6