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368 results • Page
5 of 8
Sort: Votes
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Views
Votes
Replies
1
vote
0
replies
133
views
Seeking Advice on Gene Ontology Analysis for Bulk RNA-Seq Data Without Control Samples
Gene-ontology
RNA-seq
R
updated 4 days ago by
Ram
43k • written 4 days ago by
Oscar
▴ 10
1
vote
0
replies
124
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers
TRINITY
5 hours ago by
mathavanbioinfo
▴ 90
1
vote
9
replies
4.7k
views
Help with multiple batch effects
sva
combat
batch-effect
updated 3 days ago by
Ram
43k • written 5.8 years ago by
fp89
▴ 30
1
vote
4
replies
2.4k
views
Batch effect control in GWAS data.
Batch-effect
omniexpress
GWAS
GSA
updated 2 days ago by
Ram
43k • written 4.8 years ago by
saksis.rihards
▴ 10
1
vote
1
reply
2.8k
views
removing batch effects from large number of data sets
Microarray
batch-effect
updated 3 days ago by
Ram
43k • written 5.9 years ago by
nazaninhoseinkhan
▴ 520
1
vote
1
reply
2.7k
views
Plotting a PCA Plot from SVASeq results
pca
ruvseq
sva
svaseq
batch-effect
updated 3 days ago by
Ram
43k • written 6.2 years ago by
jjrin
▴ 40
1
vote
4
replies
3.1k
views
remove batch effect for multiple tumor data
RNA-Seq
batch-effect
updated 1 day ago by
Ram
43k • written 7.1 years ago by
hellocita
▴ 40
1
vote
3
replies
2.0k
views
gene expression data analysis and batch effect methods
microarray
Gene-expression
batch-effect
updated 1 day ago by
Ram
43k • written 6.9 years ago by
Shamim Sarhadi
▴ 220
1
vote
1
reply
1.7k
views
sea corrected expression matrix
sva
microarrays
batch-effect
updated 3 days ago by
Ram
43k • written 6.8 years ago by
ATCG
▴ 380
1
vote
0
replies
1.8k
views
Using SVA with RRBS data
sva
batch-effect
RRBS
updated 3 days ago by
Ram
43k • written 7.1 years ago by
mrodrigues.fernanda
▴ 50
1
vote
1
reply
253
views
Inconsistency in SNP detection pipelines for multi-sample analysis
vcf
bam
bcf
snps
updated 2 days ago by
LChart
3.9k • written 2 days ago by
George
▴ 10
1
vote
1
reply
279
views
WGCNA network from Adjacency or TOM matrix
WGCNA
network
updated 4 days ago by
andres.firrincieli
3.6k • written 7 days ago by
Milly
• 0
1
vote
2
replies
2.9k
views
Taking surrogate variable into account before running PCA
sva
svaseq
batch-effect
updated 1 day ago by
Ram
43k • written 6.8 years ago by
wamiqsaifi
• 0
1
vote
2
replies
1.7k
views
Batch effects and MDSPlot in limma
limma
Batch-effect
MDS
Galaxy
updated 3 days ago by
Ram
43k • written 4.8 years ago by
sonayuv
• 0
1
vote
2
replies
1.9k
views
Remove batch effect from exome data
NGS
exome-sequencing
batch-effect
updated 1 day ago by
Ram
43k • written 6.5 years ago by
Alternative
▴ 270
1
vote
1
reply
302
views
Problem with Mirdeep2 and Randfold output
mirdeep2
Randfold
1 day ago by
otieno43
▴ 30
1
vote
4
replies
631
views
What happened to Tombo Re-squiggle
Tombo
resquiggle
ONT
updated 1 day ago by
Ram
43k • written 3 months ago by
turcoa1
• 0
1
vote
5
replies
2.8k
views
Batch effect identification using PCA
PCA
qRT-PCR
R
targeted-assay
Batch-Effect
updated 4 days ago by
Ram
43k • written 3.9 years ago by
mohammedtoufiq91
▴ 250
1
vote
1
reply
164
views
Do I need to go back and filter my long-reads?
alignment
nanopore
filtering
QC
ONT
updated 5 days ago by
GenoMax
141k • written 5 days ago by
eesiribloom
▴ 80
1
vote
6
replies
1.6k
views
How can Differentially Expressed Genes be found by limma package after removing batch effect by ComBat function in sva package?
limma
sva
batch-effect
R
updated 4 days ago by
Ram
43k • written 3.8 years ago by
amirmehrgou
▴ 10
1
vote
2
replies
1.4k
views
How to download a list pdb codes contained in a csv file using
Biopython
updated 3 days ago by
Ram
43k • written 3.1 years ago by
jmungar2
▴ 10
1
vote
3
replies
317
views
Ensembl gene id conversion
biomart
ensembl
updated 4 days ago by
ATpoint
81k • written 6 days ago by
naveedhasan2000
• 0
1
vote
2
replies
267
views
Tumour purity and ploidy estimation
Copy-number
Whole-exome-sequencing
4 days ago by
bp22
▴ 80
1
vote
2
replies
173
views
Interpretation of combined P values - RNA microarray meta analysis
metaanalysis
R
microarray
DExMA
combinedP
3 days ago by
hagl
▴ 10
0
votes
1
reply
13
views
bam merging for archaic samples
samtools
bam
ancient
merge
updated 11 minutes ago by
Pierre Lindenbaum
161k • written 30 minutes ago by
Matteo Ungaro
▴ 100
0
votes
2
replies
306
views
Help with understanding the identifier mapping tables in the backend of HUMAnN
metagenomics
metacyc
enzyme
biobakery
humann
6 days ago by
O.rka
▴ 710
0
votes
0
replies
189
views
Somatic and Germline variant calling for tumor, normal and blood sample
germline
variants
somatic
updated 6 days ago by
Ram
43k • written 7 days ago by
anitharavichandran2211
• 0
0
votes
0
replies
166
views
News:
Online course: Network Analysis in R
NetworkAnalyis
R
6 days ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
297
views
Stringtie error: Error: input file –e cannot be found!
RNA-seq
tuxedo
stringtie
transcriptomics
6 days ago by
menyawino
• 0
0
votes
0
replies
181
views
Novel cyclic peptide structure prediction
protein
structure-prediction
alphafold
peptide
updated 5 days ago by
Ram
43k • written 6 days ago by
menyawino
• 0
0
votes
0
replies
155
views
Plotting heatmap of genes in each samples scRNA in Seurat
scRNA
heatmap
5 days ago by
Hien
• 0
0
votes
0
replies
143
views
FreeBayes detection capacity
reads
freebayes
long
5 days ago by
quentinperriere
• 0
0
votes
0
replies
132
views
Repeat expansion identification tools for long-read data
fragilex
repeatexpansion
long-read
fmr1
5 days ago by
adarsh_pp
▴ 40
0
votes
0
replies
129
views
Automated internal stop codon checker
ORF
stopcodon
internal
virus
5 days ago by
Balazs Horvath
▴ 10
0
votes
4
replies
323
views
Compute bootstrap values on consensus tree
phylogeny
tree
raxml
4 days ago by
pablo
▴ 300
0
votes
0
replies
137
views
How should I make kallisto indexes?
kallisto
updated 4 days ago by
GenoMax
141k • written 4 days ago by
bioinfo
▴ 150
0
votes
0
replies
132
views
News:
Deadline Approaching: PETs for Public Health Challenge
privacy
public-health-challenge
updated 4 days ago by
Ram
43k • written 4 days ago by
polarise
▴ 380
0
votes
6
replies
520
views
PacBio adapters in transcriptome assembly from short read data?
adapter
transcriptome
sequencing
pacbio
vecscreen
4 days ago by
Dunois
★ 2.5k
0
votes
1
reply
173
views
Two databases: Human Microbiome Project and MGnify
Microbiome
databases
updated 4 days ago by
GenoMax
141k • written 4 days ago by
haiying.kong
▴ 360
0
votes
0
replies
882
views
Advice on group specific condition effect and model matrix in deseq2
deseq2
batch-effect
updated 4 days ago by
Ram
43k • written 4.1 years ago by
Mozart
▴ 330
0
votes
3
replies
1.1k
views
Batch effect for SNP array
sva
combat
batch-effect
SNP
updated 4 days ago by
Ram
43k • written 4.2 years ago by
Taylor95
▴ 10
0
votes
2
replies
240
views
How to identify gaps in a genome?
awk
seqkit
assembly
fasta
genome
4 days ago by
rj.rezwan
• 0
0
votes
1
reply
192
views
merging Seurat objects after SCT
Seurat
SCT
updated 4 days ago by
Ram
43k • written 4 days ago by
michelle.swarovski
• 0
0
votes
1
reply
178
views
Using adonis to include a random effect
mixed-model
adonis
updated 4 days ago by
LChart
3.9k • written 4 days ago by
leranwangcs
▴ 120
0
votes
1
reply
177
views
How to get the reference panel sites for TOPMed hg37 and 38
Imputation
updated 4 days ago by
bk11
★ 2.3k • written 4 days ago by
sinhas
• 0
0
votes
2
replies
210
views
Getting marker genes for cell types
clustering
marker-genes
umap
4 days ago by
orzrzlyo
▴ 20
0
votes
0
replies
113
views
Add geno header to VariantAnnotation objects
nichenet
scRNA-seq
4 days ago by
QX
• 0
0
votes
2
replies
243
views
RNAseq 1 control 2 different treatment
RNA-seq
4 days ago by
matteo.levorato
• 0
0
votes
1
reply
201
views
Error in edgeR/Deseq2 Analysis
r
edger
updated 4 days ago by
ATpoint
81k • written 4 days ago by
Ravita
• 0
0
votes
0
replies
128
views
GWAS Phenotypes
GWAS
4 days ago by
solomoncharles77
▴ 90
368 results • Page
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The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
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