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written 6.7 years ago by
lessismore
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1.3k
39
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9
replies
42k
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6 follow
54
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12
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12 follow
updated 11 hours ago by
kjngo
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0
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written 12.0 years ago by
Gabriel R.
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2.9k
85
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24
replies
23k
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17 follow
Tutorial:
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updated 1 day ago by
Gordon
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written 3.5 years ago by
Hamid Ghaedi
3.2k
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14k
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updated 15 hours ago by
colindaven
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written 10.9 years ago by
Ontheway
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10
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4
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updated 11 hours ago by
Ram
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written 7.4 years ago by
Tenghui Chen
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0
11
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9
replies
11k
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10 follow
13
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22
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11k
views
updated 2 days ago by
Ram
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written 6.8 years ago by
lessismore
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1.3k
3
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10k
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updated 2 days ago by
Bioinfotec
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10
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written 7.5 years ago by
nut_B
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10
23
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23
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9.8k
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updated 1 day ago by
Ram
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written 5.3 years ago by
iraia.munoa
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130
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6
replies
8.3k
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5
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6
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updated 2 days ago by
george-hall-ucl
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written 9.2 years ago by
win
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970
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updated 1 day ago by
Ram
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written 9.5 years ago by
james.lloyd
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100
3
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6.1k
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updated 2 days ago by
Ram
43k
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written 3.3 years ago by
fouerghi20
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80
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updated 2 days ago by
Ram
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written 6.4 years ago by
shania90.lk
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30
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updated 2 days ago by
Ram
43k
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Kristin Muench
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620
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3
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updated 2 days ago by
Ram
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written 4.9 years ago by
WouterDeCoster
47k
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updated 2 days ago by
Ram
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written 6.6 years ago by
grant.hovhannisyan
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4.5k
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updated 1 day ago by
Ram
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written 5.1 years ago by
tujuchuanli
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100
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4.5k
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updated 2 days ago by
进
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written 3.9 years ago by
Peter Chung
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200
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updated 1 day ago by
Ram
43k
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written 5.9 years ago by
Poorya Parvizi
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updated 2 days ago by
Ram
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written 7.4 years ago by
denalitastic
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updated 2 days ago by
Ram
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written 3.3 years ago by
fouerghi20
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80
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Recent Replies
Comment: Korean human genome reference file
by
SeoGyun
•
0
Thanks..... But I want to do imputation, so I have to make it as a vcf file, but the site only has a fatsa file....
Comment: miRNAs quantification using mirdeep2 tool
by
Ashok
•
0
thank you for your reply
https://github.com/rajewsky-lab/mirdeep2/blob/master/TUTORIAL.md
i saw this github tutorial for miRNA quantifica…
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
by
cmdcolin
★
3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: Removing duplicates
by
joe
▴
500
I'd try those OP @samuel recommends
My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do:
bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option.
Get the PDB ID's
$ ./get.sh "Mus musculus" AHR
4M4X
5NJ8
5V0L
8H77
Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that.
EDIT: I've updated that number to 250. I'm hoping you won't need …
Answer: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script:
```bash
organism=$(echo $1 | sed 's/ /%20/g')
gene=$2
curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads?
Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
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