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Recent Replies
Comment: Converting a .frq file to a data frame?
by
colindaven
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Also get rid of the curly braces in the col5 header `{}`
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Michael
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I agree with the other recommendations and I wouldn't recommend MEGA either, but would like to add that most programs, including MEGA, have…
Comment: Renaming fasta files with their headers
by
sebabiokr
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Yes, Its perfectly working..
It will be useful if you share concat command too if there are same genes in the fasta file
Thank you
Answer: Renaming fasta files with their headers
by
shenwei356
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I've got a general method, but you need to have some basic knowledge of regular expressions. If not, please learn them for 30 minutes:
-…
Comment: Renaming fasta files with their headers
by
liorglic
★
1.3k
It's hard to understand what your input and desired output look like. Please edit your original question so it includes a clear explanation…
Comment: Renaming fasta files with their headers
by
sebabiokr
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Thank you for your code, but i have a fasta file which contains [gene=rps12] ids, so i want to rename the header with gene id alone like >r…
Answer: How to speed-up to contruct phylogenetic tree
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Mensur Dlakic
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It depends on how long your protein is. Generally speaking, it shouldn't take weeks or months. Trees with more than ~100 branches are very …
Comment: How to speed-up to contruct phylogenetic tree
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liorglic
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Is there a specific reason you need to use MEGA? Maybe try another software which might be faster (e.g. PhyML, RaxML, IQ-TREE). Also, do yo…
Answer: Renaming fasta files with their headers
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liorglic
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Assuming that you have a directory containing multiple files with `.fasta` extension, each containing one record, you can do something like…
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thank you, @wuschel, for the comprehensive reply.
Comment: Renaming fasta files with their headers
by
sebabiokr
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i tried this command
awk -F 'gene=|]|[.]{1}' '/^>/ {print $2}' 7seqNC_018552.1cds.fasta > 7NC_018552.fasta
got only gene name alone wit…
Answer: Converting a .frq file to a data frame?
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zau saa
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simply add a word to line 1 as the name of column 6
Comment: SRA toolkit (NCBI) - sra to fasta
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Sanjukta
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Hi there, will it be an issue if we do not mention 60?
Comment: Renaming fasta files with their headers
by
sebabiokr
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Yes there are many answer in this forum but they are specific to header line. it doesnot work with my header line and its difficult for me …
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