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Recent Replies
Comment: How to convert plink files to Hapmap Format
by
bk11
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2.3k
Please show me a few lines of phenotype updated .fam file. You can do `head
your_data_phenoUP.fam` and paste result here. Please do not us…
Comment: GEMMA GWAS how to specify factor or numerical for covariates
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Sofia
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Hi, I don't have a solution to your question but I followed this tutorial and was helpful to me in my analysis https://youtu.be/NusV6duyvXs…
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Catalog file lists the genomes included. There seem to be 71365 unique items in field 2.
2 Bacteria WP_000018326.1 4459…
Comment: How to convert plink files to Hapmap Format
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yes sure !
![enter image description here][1]
[1]: /media/images/f0f94f6c-4387-4188-a1aa-19152a89
Answer: AGeNT LocatIt
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Give it more memory.
~10x more memory, or whatever you can give it,
I had samples that weren't even close to being done after 3.5 da…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
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Thanks! I've already tried looking through these files, I need release 83. I am trying to find this information in the .catalog file of the…
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Possibly. You will need to know the RefSeq release version. Check in this directory: https://ftp.ncbi.nlm.nih.gov/refseq/release/release-ca…
Comment: How to convert plink files to Hapmap Format
by
bk11
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Hey, can you please show me a few lines of your phenotype updated .fam file? I m seeing there are 7 columns in it, that might be the proble…
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How much variance were explained by PC1 and PC2? It doesn't look like that the largest source of variation came from the genotype differenc…
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Thank you and yes, I agree going step back is the best option but I am in a hurry at the moment so I just need to stick to the transcriptom…
Comment: How to convert plink files to Hapmap Format
by
Sofia
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Thank you so much for helping me out! I did the steps you mentioned but still got the same issue as shown in the snapshot 
version 2.3.6
version 2.3.6