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205 results • Page
2 of 5
Sort: Views
Rank
Views
Votes
Replies
1
vote
0
replies
564
views
Tool:
Mabs, a parameter optimizer for Hifiasm and Flye
assembly
4 days ago by
shelkmike
▴ 970
1
vote
2
replies
560
views
Cellchat log fold change
scRNA-seq
Fold-change
LRinteraction
CCI
cellchat
updated 5 days ago by
Ram
40k • written 10 weeks ago by
miyeok
• 0
0
votes
7
replies
542
views
What is wrong with my NCBI esearch command for 16S rRNA?
16S
NCBI
Entrez
assembly
updated 5 days ago by
GenoMax
134k • written 7 days ago by
Morgan S.
▴ 80
0
votes
2
replies
542
views
module and trait correlation for WGCNA
treatment
WGCNA
relation
microarray
module-treatment
updated 1 day ago by
AS-git
• 0 • written 5 months ago by
Shriyansh
• 0
1
vote
9
replies
538
views
more reads in metagenomic samples after 'removing host reads'
bowtie2
samtools
updated 5 days ago by
GenoMax
134k • written 6 days ago by
sapuizait
▴ 10
0
votes
2
replies
533
views
News:
The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics
radseq
stacks
updated 1 day ago by
Dave Carlson
★ 1.4k • written 2 days ago by
oliverhooker
▴ 110
1
vote
1
reply
516
views
scanpy add metadata
scanpy
metadata
updated 6 days ago by
yl759
▴ 40 • written 10 weeks ago by
Andy
▴ 90
0
votes
0
replies
496
views
Job:
Postdoctoral Research Fellow in Single-cell Computational Epigenetics - Zhou Lab at CHOP/Upenn
Postdoc
Single-cell
CHOP
updated 5 days ago by
Ram
40k • written 5 days ago by
alwayshope
▴ 30
0
votes
9
replies
474
views
Large number of gaps at the beginning of alignments
clustal-omega
DNA
alignment
updated 6 days ago by
Ram
40k • written 6 days ago by
Pit
• 0
0
votes
3
replies
462
views
CNV calling
CNV
NGS
Variant-Calling
updated 1 day ago by
Zhenyu Zhang
▴ 970 • written 8 months ago by
adarsh_pp
▴ 30
3
votes
2
replies
462
views
Conflict between MAFFT and new PRANK installation
multiple-sequence-alignment
bash
prank
mafft
phylogenetics
updated 20 hours ago by
Ram
40k • written 19 months ago by
noramarie
• 0
4
votes
5
replies
448
views
Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or both?
scRNA-seq
3 days ago by
psm
▴ 100
1
vote
5
replies
445
views
Idat raw data conversion
idat
updated 3 days ago by
Giulio Genovese
▴ 330 • written 5 days ago by
Zi
• 0
1
vote
0
replies
423
views
logFoldChange computed by EdgeR different from naive log2FCcomputed based on reads
edgeR
fold-change
updated 5 days ago by
Ram
40k • written 2.3 years ago by
ZheFrench
▴ 520
7
votes
10
replies
421
views
Batch effect normalization
RNA-seq
batch-effect
updated 2 days ago by
Ram
40k • written 3 days ago by
Smriti
• 0
1
vote
5
replies
420
views
For high quality Telomere to telomere assemblies, is short read polishing still necessary
genome
illumina
sequencing
nanopore
wgs
updated 5 days ago by
Buffo
★ 2.3k • written 7 days ago by
Mark
• 0
0
votes
5
replies
416
views
Convert gene id's to gene symbol preserving gene id's in deseq2
ensembl
r
DE
deseq2
updated 4 days ago by
Ram
40k • written 6 days ago by
dylannicoembros
• 0
1
vote
2
replies
415
views
Ranked fold changes for non-replicated data
expression
metagenomics
LogFC
fold-change
updated 5 days ago by
Ram
40k • written 18 months ago by
Tom
▴ 540
3
votes
4
replies
399
views
During alignment STAR has stopped at started alignment step
STAR
updated 1 day ago by
Ram
40k • written 5 weeks ago by
Santhi
• 0
5
votes
8
replies
391
views
Quantify the number of sequences in common paired-end sequencing data
fastq
paired-end
updated 5 days ago by
Ram
40k • written 6 days ago by
sperezilvia
• 0
3
votes
2
replies
389
views
Recommended way to normalize SmartSeq2 gene expression matrix to better match 10X expression data
rna-seq
smartseq2
r
updated 22 hours ago by
yhdist
▴ 70 • written 3 days ago by
Cookin
• 0
2
votes
4
replies
386
views
Help with celltype annotation
seurat
single-cell
4 days ago by
Chris
▴ 180
2
votes
5
replies
380
views
Uniprot Database for download
proteomics
Uniprot
updated 1 hour ago by
Elisabeth Gasteiger
★ 2.3k • written 26 days ago by
SHN
▴ 40
0
votes
2
replies
369
views
log2fC from limma on methylation analysis
methylation
limma
minfi
fold-change
updated 5 days ago by
Ram
40k • written 11 months ago by
adeizadavid
▴ 10
0
votes
1
reply
365
views
installation of Snapgene tool in Ubuntu
snapgene
Ubuntu
updated 1 day ago by
Ram
40k • written 5 months ago by
Fizzah
▴ 30
6
votes
3
replies
363
views
Viewing chromatograms on linux
ab1
chromatogram
sanger
updated 3 days ago by
Mark
★ 1.3k • written 6 days ago by
axelwilhelm
▴ 120
3
votes
4
replies
358
views
Is a PON necessary for tumor-normal matched Mutect2?
mutect
Mutect2
updated 1 day ago by
Zhenyu Zhang
▴ 970 • written 5 days ago by
sarahgzb
▴ 40
4
votes
7
replies
355
views
Elusive syntax error in Snakefile
snakemake
updated 21 hours ago by
Ram
40k • written 1 day ago by
Giuseppe Giovanni
▴ 30
2
votes
5
replies
354
views
GTF annotation file for Hg38 Dec 2013 (First Release)
hg38
file
gtf
updated 6 days ago by
GenoMax
134k • written 6 days ago by
Daniel
▴ 30
8
votes
5
replies
346
views
Alphafold Cat
Joke
updated 1 day ago by
fishgolden
▴ 510 • written 9 days ago by
BioGrad321
• 0
2
votes
6
replies
343
views
Read block operation failed with BAM file
bgzip
samtools
bam
pysam
htslib
2 days ago by
Alex Reynolds
35k
2
votes
4
replies
343
views
join the control replicates
RNA-seq
updated 6 days ago by
seidel
11k • written 6 days ago by
Jean Pierre
• 0
0
votes
5
replies
342
views
Data Import Issue detectRUNS R
R
detectRUNS
ROH
updated 5 days ago by
Ram
40k • written 5 days ago by
Whirlingdaf
▴ 30
0
votes
4
replies
338
views
Running Enrichr in python using a background gene list
gp.enrichr
python
Enrichr
6 days ago by
Jen
▴ 40
1
vote
2
replies
336
views
TCGA gene expression quantitation batch information
TCGA
updated 3 days ago by
Zhenyu Zhang
▴ 970 • written 4 weeks ago by
wrab425
▴ 50
0
votes
4
replies
331
views
Filtering mitochondrial genes in DESEq results
DESEq2
RNA-seq
differentially-expressed-genes
updated 5 days ago by
Ram
40k • written 5 days ago by
jenhadjiyerou616
• 0
3
votes
4
replies
331
views
Generate a fraction of immune cell between two condition from single cell RNAseq
single-cell
2 days ago by
synat.keam
▴ 80
1
vote
3
replies
329
views
What is "intersectional genetic strategy"? How does it work? What can it do?
cell-subtypes
4 days ago by
Ethan Lee
• 0
3
votes
4
replies
325
views
Weighted analysis
RNA-seq
2 days ago by
Peter
• 0
0
votes
3
replies
316
views
RSubread DESeq2
RNA-seq
subread
differential-expression
deseq2
updated 2 days ago by
Ram
40k • written 11 days ago by
Beyza
• 0
6
votes
6
replies
312
views
Adding a control sample to bulk RNA-seq
RNA-seq
6 hours ago by
Chris
▴ 180
2
votes
10
replies
306
views
Dealing with transcriptome sequences that are smaller than their respective genes
blastn
Trinity
Transcriptome
RNA-seq-analysis
De-novo-transcriptome-assembly
2 hours ago by
langziv
▴ 50
0
votes
10
replies
305
views
STAR Intron Motif Script Gives Segmentation fault Error
STAR
Linux
19 hours ago by
Y
• 0
0
votes
2
replies
302
views
differential gene expression analysis comparing different conditions using scRNAseq
scRNAseq
updated 3 days ago by
synat.keam
▴ 80 • written 4 days ago by
Sara
▴ 230
0
votes
2
replies
297
views
Extract Divergence Times and Corresponding Node Numbers from a Time Tree
phylogeny
R
ape
phytools
phylogenetics
1 day ago by
Simone
• 0
0
votes
1
reply
287
views
how to determine n_cells_by_count
scanpy
updated 6 days ago by
yl759
▴ 40 • written 10 weeks ago by
dalibenam64
• 0
1
vote
2
replies
286
views
How to display all top markers in the heatmap by DoHeatmap (Seurat) when there are duplicates of top marker genes for several cell clusters
DoHeatmap
Seurat
14 hours ago by
alwayshope
▴ 30
0
votes
3
replies
280
views
RdRp scan - identifying/detecting viruses- metagenomic workflow- need help
RdRp
virus-detection
metagenomic
updated 2 days ago by
Ram
40k • written 6 days ago by
eric--carron
• 0
1
vote
2
replies
278
views
Is it possible to submit multiple MS raw data files to MASCOT as a batch
MASCOT
6 days ago by
peter.berry
• 0
0
votes
2
replies
268
views
Deseq2 colData for single condition
RNA-seq
5 days ago by
Petesview
• 0
205 results • Page
2 of 5
Recent Votes
Answer: Bedtools - converting multiple bam files to bed
Answer: Bedtools - converting multiple bam files to bed
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What is the difference between norm --multiallelics -any versus --atomize?
Answer: What is the difference between norm --multiallelics -any versus --atomize?
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> This is the entry for your example accession: https://www.uniprot.org/uniprotkb?query=proteome%3AUP000005640+AND+C9J7I0 I would recommen…
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If it's difficult to tell from RNA-seq data, what other approaches I should use?
Comment: Dealing with transcriptome sequences that are smaller than their respective gene
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I modified the question so that instead of genes the question refers to CDSs.
Comment: Dealing with transcriptome sequences that are smaller than their respective gene
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Thanks. Is there an approach or a guideline to filter such sequences?
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