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News: Training in Bioinformatics for Beginners @ NIH
NGS Biomedical Training Biomedical-Informatics
updated 10 hours ago by 39k • written 2.9 years ago by ▴ 130
0
votes
0
replies
574
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH
R-Platform RGraphs Biomedical NGS
updated 10 hours ago by 39k • written 2.9 years ago by ▴ 130
1
vote
13
replies
2.1k
views
Forum: Bioinformatics computer upgrade help
computer
updated 11 hours ago by 39k • written 2.9 years ago by ▴ 50
0
votes
0
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1.3k
views
Job: Bioinformatics Postdoc Position, at Indian Institute of Technology (IIT) Madras
postdoc R SNP RNA-Seq
updated 11 hours ago by 39k • written 2.9 years ago by • 0
6
votes
5
replies
783
views
Forum: Russian universities for the study of biomedicine
russian-university
updated 10 hours ago by 39k • written 2.9 years ago by ▴ 30
0
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0
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759
views
Job: Postdoctoral Fellow in Computational Systems Biology/Bioinformatics
physics computer-science engineering biology
updated 11 hours ago by 39k • written 2.9 years ago by • 0
3
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4
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589
views
How to see set of short reads mapped to a particular long read
Mapping BWA
updated 11 hours ago by 39k • written 2.9 years ago by ▴ 20
0
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0
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2.1k
views
Job: PhD Position In Computational Structural Biology Of Membrane Proteins
PhD Computational-Structural-Biology
updated 11 hours ago by 39k • written 2.9 years ago by ▴ 30
6
votes
7
replies
1.6k
views
News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 11 hours ago by 39k • written 2.9 years ago by ▴ 40
0
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0
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1.3k
views
Job: Postdoctoral Researcher in Cancer Biology and Genomics (Boston)
Spatial Genomics R Cancer Single-Cell
updated 11 hours ago by 39k • written 2.9 years ago by ▴ 10
1
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0
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1.2k
views
Job: Bioinformatician - computational biology solutions
DTU-Biosustain Denmark DTU computational-biology
updated 11 hours ago by 39k • written 2.9 years ago by ▴ 70
0
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0
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626
views
News: Cellosaurus release 35 is available
knowledgebase cell-line
updated 11 hours ago by 39k • written 2.9 years ago by ▴ 110
0
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4
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1.7k
views
HOMER load genomes not working
HOMER rna pombe genome
updated 11 hours ago by 39k • written 2.9 years ago by • 0
0
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0
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1.7k
views
Job: Fully Funded PhD Position in the interface of Machine Learning and Health Informatics (including Bioinformatics and Clinical Informatics) - Fall 2020
R genome SNP snp gene
updated 11 hours ago by 39k • written 2.9 years ago by • 0
0
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0
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782
views
News: NGS Data Analysis Trainings (Classroom and Online)
RNA-Seq Training DNA-Seq
updated 11 hours ago by 39k • written 2.9 years ago by 9.9k
2
votes
9
replies
1.0k
views
Forum: 'No code' data manipulation tools for bioinformatics
software
updated 11 hours ago by 39k • written 2.9 years ago by • 0
1
vote
0
replies
1.0k
views
Job: HIRING: Data Wrangler, UCSC Genomics Institute
data-wrangler ucsc-genomics-institute
updated 11 hours ago by 39k • written 3.0 years ago by ▴ 30
0
votes
0
replies
781
views
Job: Postdoctoral Scholar - Metabolic Engineering
biofuels
updated 12 hours ago by 39k • written 3.0 years ago by ▴ 70
0
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0
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677
views
News: Summer School in Bioinformatics (ONLINE, 7th-11th September 2020)
Assembly sequence genome SNP RNA-Seq
updated 12 hours ago by 39k • written 3.0 years ago by ★ 2.3k
0
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0
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907
views
News: ONLINE COURSE. Eukaryotic genome assembly USING Pacbio and Hi-C
assembly pacbio long-reads HI-C
updated 12 hours ago by 39k • written 3.0 years ago by ★ 2.3k
0
votes
0
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746
views
News: A Practical Introduction to NGS Data Analysis - America Online Edition
NGS workshop DNA-Seq
updated 12 hours ago by 39k • written 3.0 years ago by 9.9k
1
vote
2
replies
1.1k
views
Job: Bioinformatics Data Analyst
R RNA-Seq Python blast
updated 12 hours ago by 39k • written 3.0 years ago by ★ 2.6k
0
votes
0
replies
538
views
News: Course on Deep Learning
Deep-Learning Machine-Learning Python
updated 12 hours ago by 39k • written 3.0 years ago by ★ 2.3k
23
votes
12
replies
1.4k
views
6 follow
Forum: Whole-Exome Analysis on a Mainstream Desktop PC
NGS whole-exome
updated 12 hours ago by 39k • written 3.0 years ago by 9.9k
0
votes
0
replies
506
views
Job: PostDoc in Clinical Metabolomics Bioinformatics in Copenhagen
R lipidomeR clinical-research metabolomics
updated 12 hours ago by 39k • written 3.0 years ago by • 0
2
votes
0
replies
528
views
News: Webinar in next hour : Updated BLAST RefSeq rRNA databases for identification and phylogenetic analysis
blast
updated 12 hours ago by 39k • written 3.0 years ago by 130k
0
votes
0
replies
413
views
News: Final Reminder for the precisionFDA Truth Challenge V2 Submissions
genome
updated 12 hours ago by 39k • written 3.0 years ago by ▴ 150
0
votes
0
replies
652
views
News: Statistical Computing for Environmental Science with R and Rstudio
Rstudio online-course R-project statistics
updated 12 hours ago by 39k • written 3.0 years ago by • 0
0
votes
0
replies
614
views
News: Introduction to Bayesian Inference in Practice
statistics MCMC R Bayesian Python
updated 12 hours ago by 39k • written 3.0 years ago by • 0
1
vote
0
replies
647
views
News: Utrecht Bioinformatics Center: online seminars
DNA-damage Utrecht epigenomics
updated 12 hours ago by 39k • written 3.0 years ago by ▴ 220
1
vote
0
replies
962
views
News: ONLINE COURSE Introduction to R for ecologists and evolutionary biologists (IRFB04) This course will be delivered live
R
updated 12 hours ago by 39k • written 3.0 years ago by ▴ 110
0
votes
0
replies
587
views
Job: postdoc in cancer pharmacogenomics modelling
machine-learning R genome next-gen python
updated 12 hours ago by 39k • written 3.0 years ago by ▴ 30
0
votes
0
replies
762
views
Job: BSE Operations Deputy & JBEI Chief Operating Officer
Business-Administration
updated 12 hours ago by 39k • written 3.0 years ago by ▴ 70
2
votes
1
reply
1.1k
views
How to find the annotation file for GPL16956 platform of Arraystar human lncRNA microarray V3 (Probe Name Version)?
annotation lncRNA microarray probe
updated 13 hours ago by 39k • written 3.0 years ago by ▴ 20
2
votes
9
replies
926
views
Forum: Any good idea for bioinfo final presentation?
R
updated 13 hours ago by 39k • written 3.0 years ago by • 0
2
votes
1
reply
1.1k
views
Job: Data Scientist Outreach Coordinator at Computercraft (NCBI/NIH) in Bethesda, MD
outreach hackathon code-a-thon
updated 13 hours ago by 39k • written 3.0 years ago by ▴ 90
0
votes
0
replies
1.1k
views
Job: Postdoctoral Researcher (m/f/d) in Computational Biology
postdoc microbiome germany computational-biology
updated 13 hours ago by 39k • written 3.0 years ago by ▴ 10
0
votes
0
replies
463
views
News: Extension Announcement for the precisionFDA Truth Challenge V2
genome
updated 13 hours ago by 39k • written 3.0 years ago by ▴ 150
5
votes
4
replies
923
views
Forum: Consider CodeOcean or other solutions for runnable Biostars answers?
CodeOcean how-to meta
updated 13 hours ago by 39k • written 3.0 years ago by 21k
1
vote
0
replies
1.2k
views
Job: Lead Computational Biologist, Immuno-Oncology
immuno-oncology
updated 13 hours ago by 39k • written 3.0 years ago by ▴ 10
0
votes
1
reply
493
views
Prediction of lnRNA interaction with all posible miRNA in Humans.
lnRNA miRNA RNA-Seq RNA
updated 13 hours ago by 39k • written 3.0 years ago by • 0
7
votes
8
replies
3.2k
views
DEseq2 design matrix with 3 factors
RNA-seq deseq2
updated 13 hours ago by 39k • written 3.0 years ago by ▴ 60
2
votes
0
replies
463
views
News: Introduction to NGS data analysis - ONLINE 7th-11th September 2020
Assembly RNA-Seq next-gen-sequencing
updated 13 hours ago by 39k • written 3.0 years ago by ★ 2.3k
0
votes
0
replies
635
views
News: Last chance to register for online RNA-Seq Workshop June 1-4
RNA-Seq
updated 13 hours ago by 39k • written 3.0 years ago by ▴ 30
0
votes
0
replies
614
views
News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
RNA-Seq Biomedical next-gen
updated 13 hours ago by 39k • written 3.0 years ago by ▴ 130
0
votes
5
replies
805
views
Forum: Advice for a start in Bioinformatics
R next-gen Python
updated 13 hours ago by 39k • written 3.0 years ago by • 0
2
votes
0
replies
567
views
News: Introduction to Deep Learning; ONLINE 28th September - 1st October
Machine-Learning Deep-Learning Python
updated 13 hours ago by 39k • written 3.0 years ago by ★ 2.3k
0
votes
0
replies
1.0k
views
Job: Post-Doctoral Research Fellow, Biostatistics
seattle biostatistics computational-biology
updated 13 hours ago by 39k • written 3.0 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Job: Post-Doctoral Research Fellow, Cancer Genomics
seattle research genomics
updated 13 hours ago by 39k • written 3.0 years ago by ▴ 10
23
votes
18
replies
1.0k
views
Forum: Versioning of Blast DB and Reproducible Research
database blast reproducible-research
updated 13 hours ago by 39k • written 3.0 years ago by ▴ 50
191 results • Page 2 of 4
Recent Votes
Differences between trimming tools: cutadapt, bbduk and sickle
C: How sickle (adaptive trimming tool) work.
How sickle (adaptive trimming tool) work.
Comment: Help with running ATAC using Encode pipeline
Answer: Is there a file format better suited for the era of pangenomics than the .vcf? W
Answer: Is there a file format better suited for the era of pangenomics than the .vcf? W
A: Can EdgeR of DeSeq be used for Single-cell RNA-seq?
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Popular Question to kenneditodd ▴ 10
Popular Question to predeus ★ 1.9k
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Comment: GISTIC from ASCAT by Hyper_Odin ▴ 280
Also, I would like to add that we cannot use ASCAT output for GISTIC input...since GISTIC expects all the chromosomes in the input file eve…
Comment: GISTIC from ASCAT by Hyper_Odin ▴ 280
Hi, Ram thanks for the help...I figured out the issue. somehow I had duplicate files in the folder which caused the issue.
Answer: multiqc: group samples by population + boxplot ? by Phil Ewels ★ 1.2k
You can't group and make boxplots as you describe, probably your best bet is to use the [highlight tool][1] in the report (especially if yo…
Comment: Problem with GPU guppy_basecaller and SLURM by kenneditodd ▴ 10
Nope - but I just noticed another error message in the guppy log. I've seen some people have the same problem on nanopore community but not…
Comment: Where to get the molecular subtype information of STAD sample in TCGA by younglin113 ▴ 50
Thanks a lot! But still a bit curious why this information is not included in GDC or UCSC xena.
Comment: CellRanger problem by Carlos Eduardo • 0
I'm using cellranger mkref --genome=Viral --fasta=path.fna --genes=path.gtf I have 126G RAM
Comment: How do I run DE for TPM values (not CPM)? by John • 0
Thanks, but it's giving me the error that expression object should be numeric and that there are 2 non-numeric columns (because the first t…
Comment: How do I run DE for TPM values (not CPM)? by LChart 2.7k
you're mixing two packages, edgeR ("dgelist") and limma ("lmFit"). Just put your log(1+TPM) matrix as the first argument to lmFit.
Answer: hisat2-align exited with value 1 by GenoMax 130k
You only need to use the `basename` of the index when you specify it. Try hisat2 -p 4 -x /home/ngs/zebra_fish/zebra_fish -U SRR10480…
Comment: How to deal with SRA file without .SRA by Andy ▴ 50
Thank you Ram! Yes, I did something wrong.
Comment: Is there a file format better suited for the era of pangenomics than the .vcf? W by Ram 39k
Exactly. Even when we were trying to leverage hail at my previous job, we ran into troubles constantly with data freezes. IMO academia is n…
Comment: Is there a file format better suited for the era of pangenomics than the .vcf? W by Jeremy Leipzig 21k
OK hospitals in particular definitely don't want to regenerate anything as individual new samples are added to the variant store. Even the …
Comment: How to deal with SRA file without .SRA by Ram 39k
PRJNA is the standard NCBI BioProject prefix. There are 19 pairs of FASTQs associated with this one so you're doing something wrong
Comment: Is there a file format better suited for the era of pangenomics than the .vcf? W by Ram 39k
> But you can't live out of your suitcase forever. I'd compare it to a local department store vs Walmart - I think cloud/distributed stora…
Comment: How do I run DE for TPM values (not CPM)? by John • 0
That's what I'm trying to do but again, I'm getting an error on the last line and I'm asking how to fix it.
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