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191 results • Page
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News:
Training in Bioinformatics for Beginners @ NIH
NGS
Biomedical
Training
Biomedical-Informatics
updated 10 hours ago by
Ram
39k • written 2.9 years ago by
AABI
▴ 130
0
votes
0
replies
574
views
News:
Training in Creating Plots, Graphs and Maps using R @ NIH
R-Platform
RGraphs
Biomedical
NGS
updated 10 hours ago by
Ram
39k • written 2.9 years ago by
AABI
▴ 130
1
vote
13
replies
2.1k
views
Forum:
Bioinformatics computer upgrade help
computer
updated 11 hours ago by
Ram
39k • written 2.9 years ago by
truebeliever24
▴ 50
0
votes
0
replies
1.3k
views
Job:
Bioinformatics Postdoc Position, at Indian Institute of Technology (IIT) Madras
postdoc
R
SNP
RNA-Seq
updated 11 hours ago by
Ram
39k • written 2.9 years ago by
nmanik
• 0
6
votes
5
replies
783
views
Forum:
Russian universities for the study of biomedicine
russian-university
updated 10 hours ago by
Ram
39k • written 2.9 years ago by
grigoryangeorg
▴ 30
0
votes
0
replies
759
views
Job:
Postdoctoral Fellow in Computational Systems Biology/Bioinformatics
physics
computer-science
engineering
biology
updated 11 hours ago by
Ram
39k • written 2.9 years ago by
pub
• 0
3
votes
4
replies
589
views
How to see set of short reads mapped to a particular long read
Mapping
BWA
updated 11 hours ago by
Ram
39k • written 2.9 years ago by
Ashi
▴ 20
0
votes
0
replies
2.1k
views
Job:
PhD Position In Computational Structural Biology Of Membrane Proteins
PhD
Computational-Structural-Biology
updated 11 hours ago by
Ram
39k • written 2.9 years ago by
marawanhussain
▴ 30
6
votes
7
replies
1.6k
views
News:
NCBI wants to remove quality scores from SRA
quality-scores
trimming
Assembly
genome
SRA
updated 11 hours ago by
Ram
39k • written 2.9 years ago by
zhousun21
▴ 40
0
votes
0
replies
1.3k
views
Job:
Postdoctoral Researcher in Cancer Biology and Genomics (Boston)
Spatial
Genomics
R
Cancer
Single-Cell
updated 11 hours ago by
Ram
39k • written 2.9 years ago by
rubendries
▴ 10
1
vote
0
replies
1.2k
views
Job:
Bioinformatician - computational biology solutions
DTU-Biosustain
Denmark
DTU
computational-biology
updated 11 hours ago by
Ram
39k • written 2.9 years ago by
info
▴ 70
0
votes
0
replies
626
views
News:
Cellosaurus release 35 is available
knowledgebase
cell-line
updated 11 hours ago by
Ram
39k • written 2.9 years ago by
Amos Bairoch
▴ 110
0
votes
4
replies
1.7k
views
HOMER load genomes not working
HOMER
rna
pombe
genome
updated 11 hours ago by
Ram
39k • written 2.9 years ago by
c78483
• 0
0
votes
0
replies
1.7k
views
Job:
Fully Funded PhD Position in the interface of Machine Learning and Health Informatics (including Bioinformatics and Clinical Informatics) - Fall 2020
R
genome
SNP
snp
gene
updated 11 hours ago by
Ram
39k • written 2.9 years ago by
suzanarslanturk
• 0
0
votes
0
replies
782
views
News:
NGS Data Analysis Trainings (Classroom and Online)
RNA-Seq
Training
DNA-Seq
updated 11 hours ago by
Ram
39k • written 2.9 years ago by
David Langenberger
9.9k
2
votes
9
replies
1.0k
views
Forum:
'No code' data manipulation tools for bioinformatics
software
updated 11 hours ago by
Ram
39k • written 2.9 years ago by
andy
• 0
1
vote
0
replies
1.0k
views
Job:
HIRING: Data Wrangler, UCSC Genomics Institute
data-wrangler
ucsc-genomics-institute
updated 11 hours ago by
Ram
39k • written 3.0 years ago by
genomicshr
▴ 30
0
votes
0
replies
781
views
Job:
Postdoctoral Scholar - Metabolic Engineering
biofuels
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
BerkeleyLab
▴ 70
0
votes
0
replies
677
views
News:
Summer School in Bioinformatics (ONLINE, 7th-11th September 2020)
Assembly
sequence
genome
SNP
RNA-Seq
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
907
views
News:
ONLINE COURSE. Eukaryotic genome assembly USING Pacbio and Hi-C
assembly
pacbio
long-reads
HI-C
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
746
views
News:
A Practical Introduction to NGS Data Analysis - America Online Edition
NGS
workshop
DNA-Seq
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
David Langenberger
9.9k
1
vote
2
replies
1.1k
views
Job:
Bioinformatics Data Analyst
R
RNA-Seq
Python
blast
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
A. Domingues
★ 2.6k
0
votes
0
replies
538
views
News:
Course on Deep Learning
Deep-Learning
Machine-Learning
Python
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
carlopecoraro2
★ 2.3k
23
votes
12
replies
1.4k
views
6 follow
Forum:
Whole-Exome Analysis on a Mainstream Desktop PC
NGS
whole-exome
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
David Langenberger
9.9k
0
votes
0
replies
506
views
Job:
PostDoc in Clinical Metabolomics Bioinformatics in Copenhagen
R
lipidomeR
clinical-research
metabolomics
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
Tommi Suvitaival
• 0
2
votes
0
replies
528
views
News:
Webinar in next hour : Updated BLAST RefSeq rRNA databases for identification and phylogenetic analysis
blast
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
GenoMax
130k
0
votes
0
replies
413
views
News:
Final Reminder for the precisionFDA Truth Challenge V2 Submissions
genome
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
stephens_sarah
▴ 150
0
votes
0
replies
652
views
News:
Statistical Computing for Environmental Science with R and Rstudio
Rstudio
online-course
R-project
statistics
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
Transmitting Science communication
• 0
0
votes
0
replies
614
views
News:
Introduction to Bayesian Inference in Practice
statistics
MCMC
R
Bayesian
Python
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
Transmitting Science communication
• 0
1
vote
0
replies
647
views
News:
Utrecht Bioinformatics Center: online seminars
DNA-damage
Utrecht
epigenomics
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
Sergio Martínez Cuesta
▴ 220
1
vote
0
replies
962
views
News:
ONLINE COURSE Introduction to R for ecologists and evolutionary biologists (IRFB04) This course will be delivered live
R
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
oliverhooker
▴ 110
0
votes
0
replies
587
views
Job:
postdoc in cancer pharmacogenomics modelling
machine-learning
R
genome
next-gen
python
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
pedro.ballester
▴ 30
0
votes
0
replies
762
views
Job:
BSE Operations Deputy & JBEI Chief Operating Officer
Business-Administration
updated 12 hours ago by
Ram
39k • written 3.0 years ago by
BerkeleyLab
▴ 70
2
votes
1
reply
1.1k
views
How to find the annotation file for GPL16956 platform of Arraystar human lncRNA microarray V3 (Probe Name Version)?
annotation
lncRNA
microarray
probe
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
daphneolivia39
▴ 20
2
votes
9
replies
926
views
Forum:
Any good idea for bioinfo final presentation?
R
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
anran04100
• 0
2
votes
1
reply
1.1k
views
Job:
Data Scientist Outreach Coordinator at Computercraft (NCBI/NIH) in Bethesda, MD
outreach
hackathon
code-a-thon
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
jyu
▴ 90
0
votes
0
replies
1.1k
views
Job:
Postdoctoral Researcher (m/f/d) in Computational Biology
postdoc
microbiome
germany
computational-biology
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
melanie.schirmer
▴ 10
0
votes
0
replies
463
views
News:
Extension Announcement for the precisionFDA Truth Challenge V2
genome
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
stephens_sarah
▴ 150
5
votes
4
replies
923
views
Forum:
Consider CodeOcean or other solutions for runnable Biostars answers?
CodeOcean
how-to
meta
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
Jeremy Leipzig
21k
1
vote
0
replies
1.2k
views
Job:
Lead Computational Biologist, Immuno-Oncology
immuno-oncology
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
mohamed.uduman
▴ 10
0
votes
1
reply
493
views
Prediction of lnRNA interaction with all posible miRNA in Humans.
lnRNA
miRNA
RNA-Seq
RNA
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
Talarash0
• 0
7
votes
8
replies
3.2k
views
DEseq2 design matrix with 3 factors
RNA-seq
deseq2
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
kand3e
▴ 60
2
votes
0
replies
463
views
News:
Introduction to NGS data analysis - ONLINE 7th-11th September 2020
Assembly
RNA-Seq
next-gen-sequencing
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
635
views
News:
Last chance to register for online RNA-Seq Workshop June 1-4
RNA-Seq
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
najoshi
▴ 30
0
votes
0
replies
614
views
News:
Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
RNA-Seq
Biomedical
next-gen
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
AABI
▴ 130
0
votes
5
replies
805
views
Forum:
Advice for a start in Bioinformatics
R
next-gen
Python
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
greesh.nk
• 0
2
votes
0
replies
567
views
News:
Introduction to Deep Learning; ONLINE 28th September - 1st October
Machine-Learning
Deep-Learning
Python
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
1.0k
views
Job:
Post-Doctoral Research Fellow, Biostatistics
seattle
biostatistics
computational-biology
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
Fred Hutch (Recruiting)
▴ 10
0
votes
0
replies
1.1k
views
Job:
Post-Doctoral Research Fellow, Cancer Genomics
seattle
research
genomics
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
Fred Hutch (Recruiting)
▴ 10
23
votes
18
replies
1.0k
views
Forum:
Versioning of Blast DB and Reproducible Research
database
blast
reproducible-research
updated 13 hours ago by
Ram
39k • written 3.0 years ago by
makrez
▴ 50
191 results • Page
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Recent Votes
Differences between trimming tools: cutadapt, bbduk and sickle
C: How sickle (adaptive trimming tool) work.
How sickle (adaptive trimming tool) work.
Comment: Help with running ATAC using Encode pipeline
Answer: Is there a file format better suited for the era of pangenomics than the .vcf? W
Answer: Is there a file format better suited for the era of pangenomics than the .vcf? W
A: Can EdgeR of DeSeq be used for Single-cell RNA-seq?
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Comment: GISTIC from ASCAT
by
Hyper_Odin
▴ 280
Also, I would like to add that we cannot use ASCAT output for GISTIC input...since GISTIC expects all the chromosomes in the input file eve…
Comment: GISTIC from ASCAT
by
Hyper_Odin
▴ 280
Hi, Ram thanks for the help...I figured out the issue. somehow I had duplicate files in the folder which caused the issue.
Answer: multiqc: group samples by population + boxplot ?
by
Phil Ewels
★ 1.2k
You can't group and make boxplots as you describe, probably your best bet is to use the [highlight tool][1] in the report (especially if yo…
Comment: Problem with GPU guppy_basecaller and SLURM
by
kenneditodd
▴ 10
Nope - but I just noticed another error message in the guppy log. I've seen some people have the same problem on nanopore community but not…
Comment: Where to get the molecular subtype information of STAD sample in TCGA
by
younglin113
▴ 50
Thanks a lot! But still a bit curious why this information is not included in GDC or UCSC xena.
Comment: CellRanger problem
by
Carlos Eduardo
• 0
I'm using cellranger mkref --genome=Viral --fasta=path.fna --genes=path.gtf I have 126G RAM
Comment: How do I run DE for TPM values (not CPM)?
by
John
• 0
Thanks, but it's giving me the error that expression object should be numeric and that there are 2 non-numeric columns (because the first t…
Comment: How do I run DE for TPM values (not CPM)?
by
LChart
2.7k
you're mixing two packages, edgeR ("dgelist") and limma ("lmFit"). Just put your log(1+TPM) matrix as the first argument to lmFit.
Answer: hisat2-align exited with value 1
by
GenoMax
130k
You only need to use the `basename` of the index when you specify it. Try hisat2 -p 4 -x /home/ngs/zebra_fish/zebra_fish -U SRR10480…
Comment: How to deal with SRA file without .SRA
by
Andy
▴ 50
Thank you Ram! Yes, I did something wrong.
Comment: Is there a file format better suited for the era of pangenomics than the .vcf? W
by
Ram
39k
Exactly. Even when we were trying to leverage hail at my previous job, we ran into troubles constantly with data freezes. IMO academia is n…
Comment: Is there a file format better suited for the era of pangenomics than the .vcf? W
by
Jeremy Leipzig
21k
OK hospitals in particular definitely don't want to regenerate anything as individual new samples are added to the variant store. Even the …
Comment: How to deal with SRA file without .SRA
by
Ram
39k
PRJNA is the standard NCBI BioProject prefix. There are 19 pairs of FASTQs associated with this one so you're doing something wrong
Comment: Is there a file format better suited for the era of pangenomics than the .vcf? W
by
Ram
39k
> But you can't live out of your suitcase forever. I'd compare it to a local department store vs Walmart - I think cloud/distributed stora…
Comment: How do I run DE for TPM values (not CPM)?
by
John
• 0
That's what I'm trying to do but again, I'm getting an error on the last line and I'm asking how to fix it.
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