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85 results • Page
2 of 2
Sort: Rank
Rank
Views
Votes
Replies
6
votes
7
replies
1.6k
views
How to assess RNA-Seq batch correction success?
Combat
RNA-Seq
Limma
DESeq2
batch-effect
updated 20 hours ago by
Ram
43k • written 4.9 years ago by
borkk
▴ 140
2
votes
2
replies
1.1k
views
Can we directly use batch corrected gene expression (Bulk RNA-seq) for further downstream analyses?
RNA-Seq
batch-effect
updated 21 hours ago by
Ram
43k • written 5.0 years ago by
tigeradab
▴ 60
1
vote
4
replies
1.7k
views
Batch correction and DE analysis of miRNA Seq data
miRNAseq
Differential-Expression
batch-effect
updated 20 hours ago by
Ram
43k • written 5.0 years ago by
georgians
▴ 50
54
votes
12
replies
28k
views
12 follow
Out Of Disk Space With Picard Tools ?
picard
updated 21 hours ago by
kjngo
• 0 • written 12.0 years ago by
Gabriel R.
★ 2.9k
0
votes
0
replies
1.7k
views
Differential expression using Scran batch corrected data
single-cell
Batch-effect
RNA-Seq
Scran
updated 20 hours ago by
Ram
43k • written 5.4 years ago by
baldissera152
▴ 10
0
votes
2
replies
1.2k
views
Normalization (microarray data)
microarray
Normalization
Batch-effect
updated 21 hours ago by
Ram
43k • written 6.3 years ago by
j_jamal96
▴ 20
4
votes
2
replies
3.7k
views
DESeq2 design and batch effect
RNA-Seq
batch-effect
DESeq2
Salmon
updated 21 hours ago by
Ram
43k • written 6.5 years ago by
georgewwp
▴ 30
1
vote
0
replies
2.1k
views
Tool:
DASC -- detecting hidden batch effects in gene expression datasets (Array/RNA-Seq/scRNA-Seq)
RNA-Seq
scRNA-Seq
R
Batch-Effect
updated 21 hours ago by
Ram
43k • written 6.8 years ago by
Ar
★ 1.1k
1
vote
2
replies
1.9k
views
Remove batch effect from exome data
NGS
exome-sequencing
batch-effect
updated 21 hours ago by
Ram
43k • written 6.5 years ago by
Alternative
▴ 270
0
votes
1
reply
2.9k
views
Microarray batch effect correction
Microarray
Batch-effect
updated 21 hours ago by
Ram
43k • written 6.6 years ago by
sarahmanderni
▴ 100
0
votes
1
reply
1.8k
views
Advice required for remove batch effect which perfectly collinear with contrast of interest
RNA-seq
batch-effect
updated 21 hours ago by
Ram
43k • written 6.6 years ago by
boymin2020
▴ 80
2
votes
2
replies
1.8k
views
Time point microarray data correcting for batch effects
microarray
combat
batch-effect
updated 21 hours ago by
Ram
43k • written 6.7 years ago by
tleona3
▴ 10
1
vote
2
replies
2.9k
views
Taking surrogate variable into account before running PCA
sva
svaseq
batch-effect
updated 21 hours ago by
Ram
43k • written 6.8 years ago by
wamiqsaifi
• 0
2
votes
3
replies
3.0k
views
RNA-seq batch effect correction
RNA-Seq
batch-effect
sequencing
updated 21 hours ago by
Ram
43k • written 6.9 years ago by
endikavarela
• 0
0
votes
0
replies
2.0k
views
NOISeq Batch Correction to RNA-seq data
Batch-effect
RNA-Seq
ARSyNseq
limma
NOISeq
updated 21 hours ago by
Ram
43k • written 6.9 years ago by
endikavarela
• 0
1
vote
3
replies
2.0k
views
gene expression data analysis and batch effect methods
microarray
Gene-expression
batch-effect
updated 21 hours ago by
Ram
43k • written 6.9 years ago by
Shamim Sarhadi
▴ 220
3
votes
4
replies
3.4k
views
any recommended tools for batch effect and normalization not written in R?
R
RNA-Seq
combat
python
batch-effect
updated 21 hours ago by
Ram
43k • written 7.1 years ago by
dyollluap
▴ 310
0
votes
2
replies
2.8k
views
RNA-seq unbalanced batch effect correction
limma
RNA-Seq
edgeR
batch-effect
updated 21 hours ago by
Ram
43k • written 7.0 years ago by
endikavarela
• 0
6
votes
0
replies
2.6k
views
Tool:
Immuno-Navigator, a batch-corrected database for gene coexpression in the immune system
gene-co-expression
batch-effect
immunology
updated 21 hours ago by
Ram
43k • written 7.0 years ago by
alexis.vandenbon
▴ 80
1
vote
4
replies
3.1k
views
remove batch effect for multiple tumor data
RNA-Seq
batch-effect
updated 21 hours ago by
Ram
43k • written 7.1 years ago by
hellocita
▴ 40
0
votes
0
replies
1.9k
views
Correcting batch effect from known variables in RnBeads using Combat
Combat
450k
methylation
RnBeads
batch-effect
updated 21 hours ago by
Ram
43k • written 7.1 years ago by
rahel14350
▴ 40
2
votes
2
replies
1.6k
views
Combining control samples from 2 separate studies. Model matrix for batch effect?
gene-expression
R
limma
batch-effect
model-matrix
updated 21 hours ago by
Ram
43k • written 7.2 years ago by
tolgaturant
▴ 20
0
votes
0
replies
1.9k
views
batch effect in radseq
radseq
batch-effect
SNP
updated 21 hours ago by
Ram
43k • written 7.4 years ago by
oselm
▴ 50
1
vote
4
replies
13k
views
RNA sequencing data batch effect removal
RNA-Seq
batch-effect
updated 20 hours ago by
Ram
43k • written 7.4 years ago by
Tenghui Chen
• 0
0
votes
3
replies
3.2k
views
Batch correction (mass spectrometry data)
Combat
R
SVA
Biostatistics
batch-effect
updated 20 hours ago by
Ram
43k • written 7.4 years ago by
mkhadka10
• 0
2
votes
4
replies
6.0k
views
Batch Effect Removal in RNA-Seq Data for DGE & WGCNA. Should I omit any samples according to PCA plots?
Batch-effect
RNA-Seq
R
DESeq2
updated 20 hours ago by
Ram
43k • written 7.6 years ago by
gokce.ouz
▴ 70
1
vote
3
replies
4.1k
views
Evaluating removing batch effect tools with PCA or MDS?
bioconductor
limma
sva
r
batch-effect
updated 20 hours ago by
Ram
43k • written 7.6 years ago by
Lluís R.
★ 1.2k
2
votes
1
reply
2.3k
views
TCGA RNAseqV2 data matrix batch effect control and remove
RNA-Seq
batch-effect
updated 20 hours ago by
Ram
43k • written 7.6 years ago by
fractal61
▴ 10
3
votes
3
replies
3.0k
views
Quick way to Identify batch effect from covariates?
bioconductor
batch-effect
updated 20 hours ago by
Ram
43k • written 7.9 years ago by
James Ashmore
★ 3.4k
3
votes
2
replies
4.1k
views
Batch effects in sequencing data
batch-effect
updated 21 hours ago by
Ram
43k • written 8.7 years ago by
Andrew
▴ 60
0
votes
3
replies
3.0k
views
Rna-seq for differential expression analysis
differential-expression
transcriptome
updated 20 hours ago by
Ram
43k • written 8.9 years ago by
siddharth.patel.153
• 0
5
votes
2
replies
2.6k
views
How do you evaluate the effectiveness of the batch effect algorithm?
Batch-Effect
updated 20 hours ago by
Ram
43k • written 9.1 years ago by
chengzhao41
▴ 110
3
votes
8
replies
4.9k
views
An idea to identify batch effects
microarray
batch-effect
updated 20 hours ago by
Ram
43k • written 9.6 years ago by
mjarosz
• 0
9
votes
3
replies
6.9k
views
EdgeR-GLMs correcting for batch effects
RNA-Seq
edgeR
Batch-Effect
updated 21 hours ago by
Ram
43k • written 9.9 years ago by
Matina
▴ 250
1
vote
3
replies
3.3k
views
How to correct for batch effect in microarray meta-analysis
ComBat
microarray
meta-analysis
batch-effect
updated 21 hours ago by
Ram
43k • written 9.9 years ago by
BrunoGiotti
▴ 120
85 results • Page
2 of 2
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https://help.galaxyproject.org/
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The tool RSEM, which performs transcript quantification for RNA-Seq data, provides FPKM.
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