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Limit : this year
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1,000 results • Page
2 of 20
Sort: Rank
Rank
Views
Votes
Replies
3
votes
2
replies
221
views
How to download iGenomes from S3
iGenome
2 days ago by
Chris
▴ 100
2
votes
3
replies
251
views
sambamba-depth: All files must be coordinate-sorted error?
read
linux
sambamba
updated 2 days ago by
Pierre Lindenbaum
154k • written 2 days ago by
MobiusT
▴ 10
2
votes
6
replies
623
views
Prokka installation - compilation aborted
database
Prokka
compilation
indexing
2 days ago by
eimanpharmacist
▴ 20
0
votes
2
replies
248
views
About inconsistent cell counts per samples obtained in small nuclear RNAseq data.
Seurat
QC
Single-Cell
2 days ago by
bk11
▴ 60
0
votes
3
replies
705
views
samtools installed but error message: Library not loaded: @rpath/libcrypto.1.0.0.dylib
Monterey
samtools
macOS
updated 2 days ago by
GenoMax
129k • written 13 months ago by
katrina
• 0
4
votes
6
replies
609
views
samtools install error
samtools
updated 3 days ago by
Joanne
• 0 • written 4 weeks ago by
bestone
▴ 10
3
votes
3
replies
236
views
About per tile sequence quality
fastqc
updated 3 days ago by
GenoMax
129k • written 3 days ago by
Chris
▴ 100
0
votes
1
reply
181
views
Identifying Mutation Frequency Changes in MSAs over time?
Mutation
Fasta
MSA
MutationRate
RNA-Seq
updated 2 days ago by
Vincent Laufer
★ 2.8k • written 3 days ago by
Saran
▴ 20
0
votes
2
replies
195
views
Variant calling in WES vs WGS
snpEff
WGS
SNPs
WES
updated 3 days ago by
Prash
▴ 180 • written 3 days ago by
fifty_fifty
▴ 40
1
vote
1
reply
149
views
Import Pymol into Python Script
Pymol
python
updated 3 days ago by
Wayne
★ 1.8k • written 3 days ago by
jdrohan
• 0
0
votes
0
replies
111
views
Tool:
Easy API For Running Bioinformatics Jobs Via Python In The Cloud
api
execution
3 days ago by
Sasha
▴ 180
0
votes
2
replies
184
views
How to generate cDNA file from genome FASTA and GTF?
cdna
scrna-seq
updated 3 days ago by
iraun
6.0k • written 3 days ago by
ipeknaz
• 0
0
votes
4
replies
333
views
how to run FacetsSuite wrapper scripts on command line
facets-suite
facets
updated 3 days ago by
Ram
39k • written 3 days ago by
Dalal
• 0
0
votes
5
replies
328
views
how find high correlated variables with a specific cutoff in R?
PEARSON
correlation
r
updated 2 days ago by
jv
★ 1.2k • written 3 days ago by
satva72
• 0
1
vote
1
reply
139
views
How do you add an ORF that overlaps the two regions where a circular genome is cut in Genbank?
genbank
3 days ago by
Chvatil
▴ 100
1
vote
2
replies
186
views
INSTALLING DEseq2 via conda
seq
conda
RNA
Dseq2
updated 2 days ago by
colindaven
4.8k • written 3 days ago by
Fizzah
▴ 20
4
votes
3
replies
196
views
grep value from html file
cat
script
commandline
shell
grep
updated 3 days ago by
dariober
14k • written 3 days ago by
arshad1292
▴ 90
0
votes
1
reply
136
views
making metadata file for differential gene expression analysis
RNAseq
updated 3 days ago by
Basti
★ 1.5k • written 3 days ago by
Sara
▴ 220
1
vote
2
replies
202
views
Create clustered bar chart in R
R
ggplot
visualization
2 days ago by
Prangan
▴ 20
0
votes
0
replies
103
views
Picard's CollectGcBiasMetrics gc-bias plot- help with interpretation
picard
gc-bias
wes
3 days ago by
bompipi95
▴ 120
5
votes
5
replies
348
views
Genes' fpkm values through cufflink
Cufflink
RNA-seq
fpkm
2 days ago by
arsala521
▴ 10
0
votes
3
replies
219
views
Which data should I select in Encode chip-seq data?
chip-seq
chipseq
encode
chip
3 days ago by
tinyimp80
• 0
0
votes
2
replies
177
views
Repbase database and transposon sequence
TE
TSD
TIRs
Tpase
2 days ago by
manaswiniparija3
▴ 10
1
vote
4
replies
310
views
IGV displays genomic coordinates in a 1-based system or 0-based?
Integrative-Genomics-Viewer
IGV
updated 3 days ago by
ATpoint
72k • written 3 days ago by
plusone
• 0
0
votes
4
replies
264
views
How do I add row names to pheatmap() when I am using a pre-normalized matrix?
pheatmap
heatmap
rna-seq
updated 2 days ago by
Trivas
★ 1.1k • written 3 days ago by
mgranada3
• 0
3
votes
2
replies
271
views
News:
Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF
SARS-CoV-2
NCBI
Codeathon
3 days ago by
PeterC_NCBI
▴ 260
3
votes
5
replies
327
views
Uniprot API access to download .pdb files
PDB
API
Python
Uniprot
3 days ago by
jdrohan
• 0
2
votes
1
reply
187
views
Analytical criteria to say a transcript is expressed in single-cell
counts
scRNA-seq
single-cell
expression-matrix
updated 3 days ago by
Ram
39k • written 4 days ago by
hamarillo
▴ 20
1
vote
2
replies
228
views
highlight regions in a dot-plot?
figure
dotplot
alignment
synteny
3 days ago by
Buffo
★ 2.2k
3
votes
8
replies
378
views
Obtaining the AF and DP values for variants in a VCF
DP
mutect2
SNP
vcf
AF
updated 3 days ago by
Ram
39k • written 4 days ago by
bt_cepo
▴ 20
0
votes
1
reply
142
views
Samtools index and sambamba-depth error?
linux
samtools
indexing
sambamba
updated 4 days ago by
Pierre Lindenbaum
154k • written 4 days ago by
MobiusT
▴ 10
0
votes
3
replies
191
views
How to extract out gene specific reads from concatenated fastq file
fastq
gene-specific
RNA-seq
nanopore
4 days ago by
Mohd
• 0
0
votes
3
replies
236
views
PLINK not converting entire vcf to bed file
vcf
plink
genome1000
bed
3 days ago by
ethan.kreuzer
• 0
6
votes
17
replies
738
views
MacOS Quicklook plugin for gtf and gff3 files?
gtf
gff3
MacOS
updated 3 days ago by
Ram
39k • written 5 days ago by
kalavattam
▴ 120
2
votes
5
replies
320
views
Using t test to compare z-scores from RNA expression data
expression
Statistics
Z-Score
RNA
1 day ago by
Camilo Andres
▴ 30
2
votes
3
replies
239
views
Using RNA-seq to detect pathogen sequences in host tissue
RNA-seq
4 days ago by
erik.burchard
▴ 10
0
votes
0
replies
92
views
News:
Virtual Genome Annotation Workshop
annotation
genome
workshop
4 days ago by
mia.nahom
▴ 10
0
votes
0
replies
148
views
Job:
Ensembl Production Project Leader
ensembl
jobs
4 days ago by
A@Ensembl
▴ 10
7
votes
1
reply
206
views
How to plot combined bar graph in R
ggplot
singleR
barplot
Bioinformatics
R
updated 4 days ago by
Nicolas Rosewick
10k • written 4 days ago by
Bioinfo
▴ 20
0
votes
0
replies
132
views
Job:
DevelopMed MSCA COFUND Fellowship Programme in Precision Oncology
training
postdoc
jobs
precision
oncology
4 days ago by
developmed
• 0
5
votes
6
replies
416
views
Inquiry Regarding Somatic Analysis and Normal Sample Requirement
somatic
germline
bioinformatics
ngs
updated 2 days ago by
Shred
★ 1.2k • written 5 days ago by
Nour-eddine
▴ 30
0
votes
0
replies
106
views
Allowed Deviations in fixed bond length and bond angles in peptides from the typical values.
protein
bondangles
structure
fragbuilder
python
4 days ago by
physicsvigna
• 0
0
votes
3
replies
321
views
Off-target % for whole-exome sequencing panel
WES
updated 4 days ago by
trausch
★ 1.8k • written 5 days ago by
bompipi95
▴ 120
2
votes
1
reply
193
views
Transcript Directionality with Unstranded Single End Reads ?
transcriptomics
expression
gene
salmon
rna-seq
updated 4 days ago by
ATpoint
72k • written 4 days ago by
Will
• 0
0
votes
3
replies
286
views
Extracting information from VCF file for many specific positions in specific chromosomes
SNP
RNA
GATK
seq
updated 4 days ago by
Pierre Lindenbaum
154k • written 4 days ago by
mohsamir2016
▴ 30
0
votes
1
reply
213
views
Correcting for continuous covariates before WGCNA
WGCNA
updated 4 days ago by
LChart
2.6k • written 4 days ago by
marina.wakid
▴ 10
1
vote
3
replies
323
views
Removing four columns with the same name and position from 38 data.frames in R
Loop
remove
R
columns
data.frame
updated 3 days ago by
zx8754
11k • written 4 days ago by
Estefania
▴ 10
4
votes
6
replies
1.2k
views
'position-aware' aligning of sequences with letter annotations
python
biopython
alignment
pairwise
5 days ago by
Joe
21k
1
vote
0
replies
178
views
Herald:
The Biostar Herald for Tuesday, May 23, 2023
herald
5 days ago by
Biostar
1.8k
1
vote
2
replies
266
views
Identifying/Annotating Enhancers
enhancer
R
ENCODE
bedtools
updated 4 days ago by
ATpoint
72k • written 5 days ago by
cthangav
▴ 40
1,000 results • Page
2 of 20
Recent Votes
A: how to count variants par sample per chromosome in a vcf file?
Comment: DEgs RNAseq
Answer: ScRNA data
Answer: extract all fasta sequence from db v5
Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, but the Max expression are near 20,000
Comment: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
Answer: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
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Recent Replies
Comment: I need help with a methyl array data analysis
by
Ahmad
▴ 10
Thank you, I will check it out
Comment: I need help with a methyl array data analysis
by
Ahmad
▴ 10
I actually have replicates. thank you
Comment: Why are some WES VCFs larger than others?
by
Jeremy Leipzig
21k
"It's not a gvcf with site coverage for the entire cohort, I called the variants myself" This sentence doesn't make sense to me. gVCFs are …
Comment: I need help with a methyl array data analysis
by
Dr William Klubinski
▴ 20
It seems the data appears to be in the beta value format (?), which represents the proportion of methylated probe intensity over the total …
Comment: problem of Global Biobank Meta-analysis Initiative
by
Fabio Marroni
★ 3.0k
Hi, can you please add the link to the page you mentioned? AFAIK some data have restricted access. Maybe full GWAS data belongs to this cat…
Comment: I need help with a methyl array data analysis
by
prasundutta87
▴ 650
Did you come across this? https://www.biostars.org/p/432297/ Regards, Prasun
Comment: Single cell chemistry
by
David
• 0
Unlikely, this data came from a experienced sequencing team, I 'm the inexperienced data analyst. I'm not sure if these samples are 10x, …
Comment: Single cell chemistry
by
David
• 0
Sorry, I did not explain it well. I did it before with other group of samples and different chemistry, so cellranger is working fine in my…
Comment: Do bioinformaticians often break molecular biologists' hearts by being the first
by
jli.ww
• 0
Based on my personal experience as a computational biologist, I was not a co-first author even if I prioritized the candidates from the pub…
Comment: DEgs RNAseq
by
Juan
• 0
Dear Delaney Sullivan, thanks, finlly I did my analisys
Answer: ScRNA data
by
Dr William Klubinski
▴ 20
It seems like your single cell RNAseq data does not already contain the Cell Barcodes or Unique Molecular Identifiers in the standard way -…
Comment: Demultiplexing bam file
by
GenoMax
129k
> Part of the header of the bam file So perhaps there are more samples. https://www.biostars.org/u/21477/: `grep "SM*" header_of_bam`. Is…
Answer: extract all fasta sequence from db v5
by
GenoMax
129k
If you need the fasta sequence download from NCBI here (146 GB zip compressed file) : https://ftp.ncbi.nih.gov/blast/db/FASTA/nr.gz
Comment: ScRNA data
by
GenoMax
129k
Is this from a SRA dataset? If so it is possible that you can get the correct information in `DataAccess` tab. Provide the accession number…
Comment: extract all fasta sequence from db v5
by
Pierre Lindenbaum
154k
is version 4 compatible with blast v5 ? try to use version 4....
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