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1,000 results • Page
3 of 20
Sort: Rank
Rank
Views
Votes
Replies
1
vote
4
replies
394
views
filter out T cell clones
vdjtools
TCR
mixcr
bulk
updated 2 days ago by
Jesse
▴ 450 • written 10 weeks ago by
chi.delta
▴ 40
5
votes
4
replies
581
views
Help and idea with TCR/BCR analysis
BCR
TCR
scRNA-seq
updated 3 days ago by
mizraelson
▴ 40 • written 3 months ago by
fi1d18
★ 4.1k
0
votes
4
replies
822
views
Detection T cell receptor transcripts
RNA-Seq
sequence
next-gen
updated 3 days ago by
mizraelson
▴ 40 • written 2.5 years ago by
jsw940
▴ 10
0
votes
1
reply
557
views
Comparing 5'RACE TCR Sequencing Methods
TCR
5'RACE
repertoire
MiXCR
clones
updated 3 days ago by
mizraelson
▴ 40 • written 2.6 years ago by
tdfyoder
▴ 40
0
votes
2
replies
1.8k
views
TCR data analysis
next-gen
TCR
updated 3 days ago by
mizraelson
▴ 40 • written 3.9 years ago by
bthomas4
• 0
3
votes
4
replies
2.0k
views
Nextseq and Miseq data output difference?
sequencing
updated 3 days ago by
mizraelson
▴ 40 • written 3.9 years ago by
Payal
▴ 140
14
votes
7
replies
314
views
BULK mRNA-seq with UMIs. Do I need to normalize by gene length?
mRNA
UMI
normalization
illumina
DESeq2
updated 2 days ago by
Matthias Zepper
2.8k • written 3 days ago by
txema.heredia
▴ 40
0
votes
1
reply
294
views
Track Clonotypes with TCR Sequence on standard Single Cell data (not scTCR-Seq)
seurat
singlecell
umitools
mixcr
tcr
updated 3 days ago by
mizraelson
▴ 40 • written 11 months ago by
Evan
▴ 170
0
votes
1
reply
338
views
Low alignment rates for randomly shredded TCR-B library with MixCR
alignment
shotgun
MixCR
TCR
updated 3 days ago by
mizraelson
▴ 40 • written 11 months ago by
pm2012
▴ 140
0
votes
2
replies
825
views
Redirect output from MIXCR
RNA-Seq
updated 3 days ago by
mizraelson
▴ 40 • written 3.8 years ago by
jh
▴ 30
0
votes
1
reply
343
views
mixcr targetQualities
repertoire
mixcr
tcr
updated 3 days ago by
mizraelson
▴ 40 • written 16 months ago by
evcon
▴ 10
1
vote
1
reply
173
views
Interpreting the meaning of outward facing reads
Illumina
sequencing
3 days ago by
jsuzuki
▴ 10
0
votes
0
replies
77
views
News:
course - Multivariate data analysis with R and vegan
Statistics
MultivariateAnalysis
R
vegan
3 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
93
views
Job:
Computational Postdoctoral Fellow - combinatorial CRISPR screening
CRISPR
editing
updated 2 days ago by
ATpoint
68k • written 3 days ago by
David
▴ 10
0
votes
0
replies
67
views
Display fraction of mutations and variants for Amplicon Sequencing sample?
PCR
Amplicon
VCF
BWA
3 days ago by
Saran
▴ 10
0
votes
1
reply
100
views
Filtering methods for samtools or GATK
samtools
filtering
GATK
updated 3 days ago by
Pierre Lindenbaum
152k • written 3 days ago by
kot3
• 0
1
vote
2
replies
155
views
Combine files that have partial filename matches
Sequence
updated 3 days ago by
Pierre Lindenbaum
152k • written 3 days ago by
genomes_and_MGEs
▴ 10
1
vote
7
replies
247
views
Downloading NT chunks from NCBI and creating a BLAST database
nucleotide
blast
nt
blastn
database_update.pl
updated 1 day ago by
GenoMax
125k • written 3 days ago by
Vinícius
• 0
3
votes
7
replies
405
views
how to output blastx results with full accession
blast
accession
abridged
3 days ago by
liyong
▴ 40
4
votes
1
reply
106
views
single pathway score
score
pathway
transcriptome
updated 3 days ago by
ATpoint
68k • written 3 days ago by
joha
▴ 10
1
vote
5
replies
179
views
more than one sample in the same fasta file
mirnaseq
usegalaxy
3 days ago by
demoraesdiogo2017
▴ 80
2
votes
1
reply
116
views
genes presence-absence analysis
pav
gene
presence-absence
updated 3 days ago by
colindaven
4.4k • written 3 days ago by
ahmadjoyyia
• 0
0
votes
1
reply
101
views
Error in trimmomatic
Trimommatic
updated 3 days ago by
GenoMax
125k • written 3 days ago by
Anderson Stiward
• 0
1
vote
7
replies
249
views
Unknown chromosome results in .narrowPeak files
ChIPSeq
chromosomes
unknown
2 days ago by
StacyG
• 0
1
vote
2
replies
216
views
deconvolution of spatial transcriptome
deconvolution
spatial
transcriptome
updated 2 days ago by
Ming Tang
★ 2.9k • written 3 days ago by
Omics data mining
▴ 210
0
votes
4
replies
277
views
get SNPs from draft genomes
genome
SNP
updated 2 days ago by
colindaven
4.4k • written 5 days ago by
anubhav9
• 0
0
votes
0
replies
89
views
How can two contradicted gene sets be enriched in a cancer sample in GSEA analysis?
HALLMARK_UV_RESPONSE_UP
GSEA
updated 3 days ago by
ATpoint
68k • written 3 days ago by
Amr
▴ 140
0
votes
0
replies
86
views
When normalising to 3NF, can you migrate compound keys and/or foreign keys to other tables? (third normal form)
relational-database
3 days ago by
jessewhite8077
• 0
0
votes
0
replies
97
views
EggNOG mapper annotation results
EC....
COGs
Eggnog
GOs
results
3 days ago by
F.Bedjou
• 0
0
votes
1
reply
140
views
expanding sequence
srr
updated 3 days ago by
mohammadhassanj
▴ 230 • written 3 days ago by
skdv2522
• 0
6
votes
3
replies
265
views
Tool for aligning short protein sequences
protein
alignment
updated 3 days ago by
Andrzej Zielezinski
11k • written 3 days ago by
SaltedPork
▴ 170
2
votes
6
replies
277
views
Bedtools give different output
bedtools
annotation
genome
SNP
bash
3 days ago by
anikcropscience
▴ 150
3
votes
4
replies
296
views
How to select data from assays list in SummarizedExperiment to plot
r
bioconductor
DEP
SummarizedExperiment
2 days ago by
WUSCHEL
▴ 650
0
votes
1
reply
189
views
Primer design scripts. OSError: Missing SEQUENCE tag
OSError
Primer3
updated 4 days ago by
mohammadhassanj
▴ 230 • written 4 days ago by
Young-Ho
• 0
7
votes
4
replies
279
views
How to merge set of bam files into one?
merge
bam
python
pysam
updated 3 days ago by
Ram
37k • written 4 days ago by
mrj
▴ 130
0
votes
1
reply
204
views
Error in GDC download in TCGAbiolinks
GDCdownload
TCGAbiolinks
R
updated 4 days ago by
andrechristianes
• 0 • written 5 days ago by
Maryam
• 0
0
votes
2
replies
1.4k
views
arlequin SFS output
plink
arlequin
pgdspider
sfs
fastsimcoal
updated 4 days ago by
Jimmy
• 0 • written 3.6 years ago by
decaraa
• 0
1
vote
2
replies
270
views
Need help understanding reference transcriptome and where to download
salmon
rnaseq
index
3 days ago by
Daniel
• 0
0
votes
0
replies
112
views
What's the state-of-the-art for gene calling in eukaryotic transcriptomics?
modeling
eukaryotic
transcriptomics
call
gene
4 days ago by
O.rka
▴ 640
0
votes
7
replies
355
views
R Columns to Seurat Object
seurat
scrna-seq
updated 3 days ago by
Amitm
★ 2.1k • written 4 days ago by
bioinformatics.girl
• 0
9
votes
21
replies
8.0k
views
Tool:
BioLabDonkey - new Mac program for molecular biologists
software
biolabdonkey
updated 4 days ago by
Ram
37k • written 3.6 years ago by
vytarasov
▴ 170
1
vote
3
replies
264
views
Alphafold in Linux - HHblits error
linux
alphafold
4 days ago by
charlieclark1ee
▴ 10
4
votes
22
replies
685
views
bowtie2
sequence
bowtie2
bwa
updated 2 days ago by
GenoMax
125k • written 4 days ago by
ugur
• 0
3
votes
1
reply
168
views
RNA seq analysis from the data file which received from company
RNA
editing
updated 4 days ago by
4galaxy77
2.6k • written 4 days ago by
Genetics
• 0
0
votes
0
replies
106
views
How to adjust graph in scanpy?
scanpy
single-cell
RNA-seq
1 day ago by
bioinfo
▴ 20
0
votes
0
replies
89
views
FilterMutectCalls mutect2
gatk
mutect2
4 days ago by
Varun Gupta
★ 1.2k
2
votes
4
replies
234
views
Ensembl ID to Gene Symbol Converter
ensembl
Homo_sapiens
BioMart
biotools
updated 1 day ago by
GenoMax
125k • written 4 days ago by
GA
• 0
1
vote
2
replies
188
views
Strange results from Diffbind-Deseq2 differential peak binding of cfChip-seq with blocking
Diffbind
cfChip-seq
Blocking
Deseq2
updated 4 days ago by
Ram
37k • written 4 days ago by
Oladele
• 0
6
votes
4
replies
2.9k
views
Generate GVF file from VCF file
VCF
updated 4 days ago by
Alireza
▴ 20 • written 8.1 years ago by
win
▴ 940
9
votes
6
replies
5.6k
views
Convert GVF to VCF
vcf
updated 4 days ago by
Alireza
▴ 20 • written 8.0 years ago by
win
▴ 940
1,000 results • Page
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