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1,000 results • Page
3 of 20
Sort: Votes
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Votes
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15
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1
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6.4k
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Tutorial:
A compilation of conversion tools for BED, SAM/BAM, psl, pslx, blast tabular and blast xml
psl
SAM
blast
BED
updated 16 days ago by
Ram
39k • written 5.6 years ago by
Joseph Hughes
★ 3.0k
15
votes
11
replies
3.7k
views
9 follow
Forum:
Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA
DAVID
enrichment-analysis
-geneontology
updated 14 days ago by
Ram
39k • written 14 months ago by
mark.ziemann
★ 1.8k
15
votes
9
replies
1.7k
views
6 follow
Forum:
[Opinion] - What alignment software do you use?
next-gen
alignment
updated 11 days ago by
Ram
39k • written 5.2 years ago by
Andrew_MacGregor
▴ 30
15
votes
6
replies
3.5k
views
Forum:
Which database software is better for bioinformatics web development? MySQL or MongoDB?
database
mysql
mongodb
software
updated 9 days ago by
Ram
39k • written 4.7 years ago by
mcclintock
▴ 10
15
votes
10
replies
1.9k
views
6 follow
Forum:
help identifying bioinformatics operations tools
database
next-gen
operations
genomics
updated 8 days ago by
Ram
39k • written 4.5 years ago by
jsmedmar
▴ 80
14
votes
6
replies
5.3k
views
7 follow
How Can I Compare Differential Expression Data From Mouse And Human?
rna
orthologues
identifiers
updated 22 days ago by
Di Wu
• 0 • written 11.6 years ago by
Stephanhart
▴ 30
14
votes
9
replies
4.2k
views
8 follow
Forum:
MD into bioinformatics
MD
career
updated 7 days ago by
Ram
39k • written 4.5 years ago by
elina_beleva
▴ 30
14
votes
16
replies
4.4k
views
8 follow
Forum:
Yet Another Programming Language
Rust
Julia
updated 18 days ago by
Ram
39k • written 5.9 years ago by
Medhat
9.6k
14
votes
3
replies
3.4k
views
News:
Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar
symposium
conference
updated 10 days ago by
Ram
39k • written 5.0 years ago by
lakhujanivijay
5.7k
14
votes
6
replies
2.2k
views
6 follow
Forum:
Bioinformatics experience in programming
python
R
updated 9 days ago by
Ram
39k • written 4.8 years ago by
lucas_
▴ 20
14
votes
9
replies
4.2k
views
6 follow
Tutorial:
Setting up Aspera Connect (ascp) on Linux and macOS
aspera
ascp
updated 29 days ago by
sjlee4019
• 0 • written 11 months ago by
ATpoint
72k
14
votes
6
replies
6.2k
views
Heatmap error: 'x' must be a numeric matrix
R
heatmap
updated 18 days ago by
Ram
39k • written 18 months ago by
adnan.sabar7865
▴ 20
14
votes
5
replies
1.1k
views
The most exciting and regret moment for a bioinformatician
career
updated 16 days ago by
Ram
39k • written 5.6 years ago by
fi1d18
★ 4.2k
14
votes
10
replies
1.6k
views
Forum:
WGBS alignment with BitMapperBS
BitMapperBS
bismark
updated 1 day ago by
Ram
39k • written 3.9 years ago by
Shicheng Guo
★ 9.3k
14
votes
11
replies
5.4k
views
7 follow
Forum:
Do you need a deduplication tool for FASTQ data in fastp?
deduplication
fastp
updated 2 days ago by
Ram
39k • written 4.0 years ago by
chen
★ 2.4k
14
votes
5
replies
6.1k
views
Forum:
Seurat vs Monocle
R
RNA-Seq
next-gen
single-cell
updated 1 day ago by
Ram
39k • written 3.9 years ago by
Arup Ghosh
3.2k
14
votes
11
replies
2.4k
views
6 follow
News:
Announcing bioSyntax: Syntax highlighting for biological files
computational-biology
updated 15 days ago by
Ram
39k • written 5.4 years ago by
anicet.ebou
▴ 170
14
votes
9
replies
1.7k
views
Forum:
The push toward standardisation
stadardisation
updated 16 days ago by
Ram
39k • written 5.6 years ago by
Kevin Blighe
85k
13
votes
11
replies
4.2k
views
Forum:
Anyone using Ubuntu on Windows (WSL)?
ubuntu
wsl
updated 9 days ago by
Ram
39k • written 4.9 years ago by
Batu
▴ 220
13
votes
4
replies
982
views
Forum:
The shortcoming of shiny app in building webserver
R
shiny
webserver
updated 14 hours ago by
Ram
39k • written 3.7 years ago by
harrypotterandsbt
▴ 110
13
votes
18
replies
2.7k
views
6 follow
Forum:
Bioinformatics independent study group
Proteomic
RNA-Seq
Genomic
updated 17 days ago by
Ram
39k • written 5.8 years ago by
Leite
★ 1.2k
13
votes
9
replies
1.9k
views
News:
Inviting NEW Biostars moderators to join Biostars slack channel
slack
moderator
updated 10 days ago by
Ram
39k • written 5.0 years ago by
GenoMax
129k
13
votes
3
replies
25k
views
What is the difference between blastx and tblastn?
assembly
blast
ncbi
sequence
updated 2 days ago by
Ram
39k • written 4.0 years ago by
Kumar
▴ 100
13
votes
2
replies
1.2k
views
News:
Thank you Biostars!
meta
updated 3 days ago by
Ram
39k • written 4.1 years ago by
Glory Basumata
▴ 140
13
votes
7
replies
8.2k
views
Forum:
The struggle between fastq and fastq.gz, compressed v/s uncompressed file formats
fastq
updated 21 days ago by
Ram
39k • written 5.9 years ago by
lakhujanivijay
5.7k
13
votes
6
replies
933
views
Forum:
To Cloud or Not to Cloud - Privacy implications of genetic data sharing
security
diagnostics
DNA-Seq
updated 3 days ago by
Ram
39k • written 3.9 years ago by
David Langenberger
9.9k
13
votes
25
replies
3.0k
views
7 follow
VEP output has no gene names
alignment
sequencing
vep
updated 2 days ago by
barslmn
★ 1.6k • written 4.8 years ago by
Gene_MMP8
▴ 230
13
votes
14
replies
4.8k
views
9 follow
Tool:
open-cravat: variant annotation tool
open-cravat
Tool
updated 11 days ago by
anna.montaner.domenech
• 0 • written 4.5 years ago by
slcrick
▴ 260
13
votes
4
replies
7.9k
views
Selection of a "suggestive" level of association in a GWAS study
association
GWAS
statistics
2 days ago by
Vincent Laufer
★ 2.9k
12
votes
2
replies
4.7k
views
Is A Genome Position In An Exon Or Intron?
exon
intron
updated 17 days ago by
Jensi
• 0 • written 9.7 years ago by
Justin
▴ 460
12
votes
4
replies
1.7k
views
News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Personalised-Medicine
Nanopore
updated 10 days ago by
Ram
39k • written 5.0 years ago by
kzkedzierska
▴ 290
12
votes
2
replies
2.6k
views
Forum:
List of genome annotation tools (>140)
gene
genome
updated 15 hours ago by
Ram
39k • written 3.8 years ago by
Juke34
7.9k
12
votes
13
replies
5.4k
views
9 follow
Mauve installation fails in Windows 8
software error
alignment
updated 19 days ago by
Neonny86
• 0 • written 6.8 years ago by
Bioblazer
▴ 50
12
votes
22
replies
985
views
Help with error in GATK variant calling
GATK
updated 22 days ago by
Ram
39k • written 24 days ago by
Chris
▴ 100
12
votes
12
replies
8.2k
views
8 follow
How to work out Z score for heatmaps for RNA seq dataset
R
updated 22 days ago by
yudibedi
• 0 • written 2.0 years ago by
v.johnson
▴ 20
12
votes
6
replies
3.6k
views
ClustalW multiple output files
sequence
clustalw
alignment
gene
updated 8 days ago by
Ram
39k • written 4.6 years ago by
piotr.ultimo
▴ 40
12
votes
13
replies
1.8k
views
6 follow
Forum:
Recovering bam files after unknown deletion in the storage
photorec
bam
sequencing
updated 2 days ago by
Ram
39k • written 4.0 years ago by
Gabriel Wajnberg
▴ 70
12
votes
12
replies
2.5k
views
Forum:
Programming interview via Skype
programming-test
interview
updated 9 days ago by
Ram
39k • written 5.0 years ago by
padgaus
▴ 50
12
votes
4
replies
2.4k
views
16S-specific multiple alignment of rDNA sequences
multiple-sequence-alignment
16S
multiple-alignment
updated 17 days ago by
Ram
39k • written 3.1 years ago by
predeus
★ 1.9k
12
votes
3
replies
11k
views
words: time course VS time series
time-course
time-series
updated 3 days ago by
Ram
39k • written 7.7 years ago by
pengchy
▴ 450
12
votes
4
replies
497
views
Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
genome
bed
transcript
TSS
19 days ago by
Rafael Soler
★ 1.2k
12
votes
21
replies
1.6k
views
6 follow
Aberrant splicing in bulk RNAseq
aberrant-splicing
transcript
isoform
exon
updated 8 days ago by
sbt_gvs
• 0 • written 3 months ago by
txema.heredia
▴ 70
12
votes
4
replies
1.3k
views
Forum:
Bioinformatics and biotechnology market in future.
genome
next-gen
updated 15 hours ago by
Ram
39k • written 3.8 years ago by
mona11224
• 0
12
votes
8
replies
2.6k
views
7 follow
Bioinformatician salary - Current market
career
updated 18 days ago by
Ram
39k • written 5.9 years ago by
prabha
▴ 10
12
votes
4
replies
1.7k
views
Forum:
Update: CRISPR off-target effects causing unexpected mutations - good science or media hype?
off-target
CRISPR
updated 21 days ago by
Ram
39k • written 6.0 years ago by
BioinfGuru
★ 1.6k
12
votes
5
replies
2.0k
views
C++ tools are hard to install for biologist, why the community stick on it?
Cpp
Java
updated 11 days ago by
Ram
39k • written 7.3 years ago by
Chen Sun
★ 1.1k
12
votes
11
replies
6.7k
views
Tutorial:
How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
NCBI
Bioproject
SRA
BioSample
updated 23 days ago by
Ram
39k • written 6.2 years ago by
CandiceChuDVM
★ 2.4k
12
votes
20
replies
1.7k
views
Is there a single header file somewhere I can use to read bam?
cpp
bam
c
updated 11 days ago by
Ram
39k • written 4.6 years ago by
Click downvote
▴ 720
11
votes
4
replies
303
views
how to sort a fasta file
fasta
updated 1 day ago by
Pierre Lindenbaum
154k • written 1 day ago by
Mohd
▴ 20
11
votes
8
replies
1.6k
views
6 follow
Question to wet lab life scientists and clinicians: is additional bioinformatics support from a freelancer an option?
freelance
updated 10 days ago by
Ram
39k • written 5.0 years ago by
BioITFreelancer
• 0
1,000 results • Page
3 of 20
Recent Votes
Comment: Low mapping percentage
Comment: Low mapping percentage
A: genomicranges outside sequence bounds
A: how can i download human ribosomal reference ?
Bayesian network for biological data using bnlearn
Comment: What does canonical transcript mean in the context of VEP
Answer: What does canonical transcript mean in the context of VEP
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Comment: Low mapping percentage
by
Sib
▴ 40
Thank you for the reply. If there is not much I can do about the contamination at this stage, what is the benefit of knowing the source of…
Answer: integrate single cell RNA sequencing data
by
Hamid Ghaedi
2.9k
There are different approaches that you may choose to deal with batch correction. Harmony is one of those approaches that has been shown to…
Comment: What does canonical transcript mean in the context of VEP
by
Vincent Laufer
★ 2.9k
@curious - The only thing I have to add to @yokofakun 's precise answer is that, while you are considering and reading about Ensembl canoni…
Comment: Help with running ATAC using Encode pipeline
by
Chris
▴ 100
Thank you for the instruction! I see the beside json file we also have input file which I am confused. Because we have already defined the …
Comment: Comparing loci across catalogs
by
rycro_c
• 0
Hi @Austin, Did you ever figure this out?
Comment: Low mapping percentage
by
Dave Carlson
★ 1.3k
I've been faced with similar issues in the past. Both option 1 and 2 seem useful. You can also treat your data as accidental metagenomic …
Comment: How to sort gff3 according to chromosome order?
by
Pierre Lindenbaum
154k
-s, --stable stabilize sort by disabling last-resort comparison
Comment: Low mapping percentage
by
GenoMax
129k
If you do have contamination (either from rRNA of same species or from true contaminant(s)) there is not much you can do about that at this…
Comment: Optimum setting for local blastp for ~10K sequences
by
GenoMax
129k
> Running the same sequence on the blast web server took 10 seconds Don't try to compare anything local with NCBI's web blast infrastruct…
Comment: how to Construct a Newick tree file from five large fasta files
by
Joe
21k
Yes, I know - but that doesn't answer the question. **What *kind* of phylogenetic tree?**
Comment: Optimum setting for local blastp for ~10K sequences
by
sodiumnitrate
▴ 20
Thank you for the explanation! I managed to get diamond to work, but I'm having trouble getting it to run faster than blast. For a single t…
Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
by
GenoMax
129k
That is the question @Vincent answer poses since it seems to correspond to something different. You can also create an issue on https://gi…
Answer: How to sort gff3 according to chromosome order?
by
GenoMax
129k
Please use `AGAT`: https://agat.readthedocs.io/en/latest/topological-sorting-of-gff-features.html
Comment: convert data frame with character column to data frame with integer column
by
atemedorri137798
• 0
dear @Basti : As you said in order to clarify my issue I edit question box with give an example. I will be grateful if you take a look at …
Comment: How to sort gff3 according to chromosome order?
by
Ram
39k
Those are your options with the `sort` utility - you can either keep the existing order or re-order by coordinate. If you're looking for a …
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