Limit : this year
all time today this week this month this year
1,000 results • Page 3 of 20
Sort: replies
Rank Views Votes Replies
36
votes
25
replies
32k
views
15 follow
Downsampling dataset with more than 60 million reads
next-gen RNA-Seq
updated 4 months ago by ▴ 60 • written 9.7 years ago by ▴ 90
6
votes
25
replies
38k
views
14 follow
CluserProfiler message "No gene can be mapped"
R
updated 10 months ago by • 0 • written 6.1 years ago by ▴ 130
38
votes
25
replies
9.1k
views
13 follow
FASTA file of fixed length
sequence fasta
updated 7 months ago by 43k • written 8.0 years ago by ▴ 250
68
votes
25
replies
16k
views
12 follow
Tool: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
fastq SRA
updated 5 months ago by 141k • written 5.1 years ago by ★ 1.4k
18
votes
25
replies
15k
views
13 follow
Easy way to split VCF file by chromosome
sequence TOPMED chromosome Imputation SNP
updated 9 months ago by 161k • written 2.2 years ago by ▴ 30
59
votes
25
replies
5.4k
views
8 follow
Forum: Am I crazy, or are most published RNA-seq studies vastly underpowered?
sample-size statistical-power RNA-Seq
updated 10 months ago by 43k • written 3.7 years ago by ▴ 220
17
votes
25
replies
2.4k
views
Tool: Platform for Bioinformatics Students, Scholars and Scientists
sequence genome
updated 9 months ago by 43k • written 8.1 years ago by ▴ 50
13
votes
25
replies
4.3k
views
7 follow
VEP output has no gene names
alignment sequencing vep
updated 10 months ago by ★ 2.1k • written 5.7 years ago by ▴ 240
60
votes
25
replies
22k
views
17 follow
Which Operating System Do You Prefer For Bioinformatics?
general subjective
updated 6 months ago by 43k • written 14.2 years ago by 28k
51
votes
25
replies
6.8k
views
10 follow
What Is Your Experience With Bioinformatics Webservices?
web-service subjective
updated 5 months ago by 43k • written 14.1 years ago by 54k
64
votes
24
replies
3.0k
views
12 follow
Forum: How much I must feel useless?
machine-learning Programming statistics
updated 11 months ago by 43k • written 5.5 years ago by ▴ 80
87
votes
24
replies
23k
views
17 follow
Tutorial: Gene Set Enrichment Analysis
microarray enrichment RNA-Seq GSEA
updated 1 day ago by • 0 • written 3.5 years ago by 3.2k
159
votes
24
replies
62k
views
19 follow
Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
alternative-splicing splicing rna-seq
updated 10 months ago by 43k • written 11.1 years ago by 10k
20
votes
24
replies
6.9k
views
6 follow
Forum: Python or R
RNA-Seq alignment next-gen-sequencing
updated 11 months ago by 43k • written 5.9 years ago by ▴ 160
15
votes
24
replies
2.5k
views
7 follow
Forum: Airport.bio: First class ticket to any biological database in the world
RNA-Seq ChIP-Seq SNP
updated 11 months ago by 43k • written 6.0 years ago by ▴ 350
27
votes
24
replies
2.4k
views
7 follow
Code Golf - bisulfite conversion
bisulfite bsseq code-golf
updated 11 months ago by 43k • written 5.5 years ago by 22k
65
votes
24
replies
17k
views
14 follow
Mapping Snps To Pathways
snp genotyping pathway gene enrichment
updated 6 months ago by 43k • written 14.1 years ago by 161k
80
votes
24
replies
11k
views
18 follow
Which Bioinformatics Journals Do You Follow?
bioinformatics-journal
updated 5 months ago by 43k • written 14.0 years ago by 28k
48
votes
24
replies
8.2k
views
14 follow
Tool: Hera: A new tool for RNA-Seq analysis
kallisto RNA-Seq STAR gene-fusion
updated 10 months ago by 43k • written 6.7 years ago by ▴ 580
4
votes
24
replies
6.0k
views
Split a concatenated alignment in multiple files
alignment fasta
updated 6 months ago by • 0 • written 9.1 years ago by ★ 2.8k
66
votes
23
replies
49k
views
8 follow
extract dendrogram cluster from pheatmap
R
updated 4 weeks ago by • 0 • written 6.4 years ago by ★ 1.2k
33
votes
23
replies
21k
views
12 follow
Is there a tool that sorts gtf files?
RNA-Seq genome
updated 7 months ago by ▴ 120 • written 6.1 years ago by ▴ 670
6
votes
23
replies
1.4k
views
How to speed Salmon index up
metagenome genome salmon
3 months ago by young_bioinformatician ▴ 230
18
votes
23
replies
7.7k
views
7 follow
How to exclude some of breast cancer subtypes just by looking at gene expression?
RNA-Seq genome cancer gene
updated 9 months ago by • 0 • written 6.4 years ago by ▴ 960
11
votes
23
replies
1.7k
views
gatk Hardfilter Error
hardfilter
updated 10 months ago by 54k • written 10 months ago by ▴ 30
56
votes
23
replies
5.0k
views
10 follow
Tool: ASCIIGenome: Text Only Genome Viewer!
terminal genome-browser java ASCIIGenome
updated 10 months ago by 43k • written 7.8 years ago by 14k
66
votes
23
replies
10k
views
9 follow
Using Hdf5 To Store Bio-Data
hdf5 storage database
updated 6 months ago by 43k • written 14.2 years ago by 161k
40
votes
23
replies
4.1k
views
12 follow
Forum: Why learn programming in bioinformatics?
Programming
updated 11 months ago by 43k • written 5.6 years ago by ▴ 110
23
votes
23
replies
9.8k
views
6 follow
How to see if adjusting batch effect in RNA-seq is working or not
RNA-Seq removeBatchEffect batch-effect edger
updated 2 days ago by 43k • written 5.3 years ago by ▴ 130
31
votes
23
replies
30k
views
15 follow
Amino Acid Change To Genomic Location
snp amino-acids
updated 3 months ago by ▴ 80 • written 12.3 years ago by ▴ 110
20
votes
23
replies
7.1k
views
6 follow
Tool: EaSeq - Interactive ChIP-seq analysis and visualization (for Windows)
easeq Windows Visualization ChIP-Seq
updated 9 months ago by 43k • written 8.0 years ago by ▴ 460
61
votes
23
replies
56k
views
15 follow
How Can I Know The Length Of Mapped Reads From Bam File?
bam mapping
updated 5 months ago by ★ 1.2k • written 11.1 years ago by ★ 1.3k
93
votes
23
replies
91k
views
15 follow
Tutorial: How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
bcftools samtools htslib
updated 3 months ago by • 0 • written 5.7 years ago by ▴ 610
33
votes
23
replies
4.1k
views
8 follow
Forum: Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF file-format genomics
updated 10 months ago by 22k • written 10 months ago by 4.2k
6
votes
23
replies
26k
views
6 follow
devtools Installation error in R (version 3.5.3)?
github R phylogeny devtools
updated 10 months ago by 43k • written 5.1 years ago by ▴ 120
39
votes
23
replies
34k
views
11 follow
bcftools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory
bcftools
updated 7 months ago by ▴ 40 • written 2.8 years ago by ▴ 130
12
votes
23
replies
8.3k
views
6 follow
motif search with ATAC-seq
motif-search ATAC-seq
updated 10 months ago by 43k • written 5.5 years ago by ★ 2.6k
11
votes
22
replies
4.1k
views
No significant DEG: A request to double check my commands for limma.
limma differential-gene-expression
updated 10 days ago by 43k • written 5.0 years ago by ▴ 260
3
votes
22
replies
3.9k
views
GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
GRanges
updated 10 months ago by ★ 2.2k • written 13 months ago by • 0
1
vote
22
replies
2.0k
views
error with Tximport when txOut = TRUE
tximport R
updated 9 months ago by 43k • written 9 months ago by • 0
24
votes
22
replies
27k
views
11 follow
replace fasta headers with another name in a text file
perl
updated 9 months ago by • 0 • written 9.9 years ago by ▴ 60
27
votes
22
replies
5.7k
views
8 follow
Forum: Recommendations of Linux distros for beginners in bioinformatics
training linux
updated 11 months ago by 43k • written 6.4 years ago by ▴ 810
31
votes
22
replies
13k
views
6 follow
Tool: SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
FASTQ SeqKit FASTA
updated 10 months ago by 43k • written 7.5 years ago by 8.4k
9
votes
22
replies
9.6k
views
Tool: BioLabDonkey - new Mac program for molecular biologists
software biolabdonkey
9 months ago by vytarasov ▴ 180
26
votes
22
replies
13k
views
10 follow
Tool: BBSketch - A Tool for Rapid Sequence Comparison
minhash sketch bbmap blast
updated 11 months ago by 43k • written 7.2 years ago by 20k
13
votes
22
replies
11k
views
SVA : Setting up the data from an ExpressionSet and applying sva function to extimate batches
sva combat batch-effect
updated 2 days ago by 43k • written 6.8 years ago by ★ 1.3k
11
votes
22
replies
4.5k
views
7 follow
Which New Bioinformatics Related Tool Would You Appreciate The Most?
programming
updated 9 months ago by 43k • written 11.7 years ago by 3.2k
57
votes
22
replies
28k
views
7 follow
Batch correction in DESeq2
Combat DESeq2 Batch-Effect
updated 14 days ago by 43k • written 4.5 years ago by ▴ 510
34
votes
22
replies
2.9k
views
11 follow
Forum: Have we failed as bioinformatician in this time of COVID-19
Bioinformatician COVID-19
updated 10 months ago by 43k • written 3.9 years ago by ▴ 10
15
votes
22
replies
8.6k
views
What Are The Most Reliable Normalization Methods For Microarrays?
microarray
updated 5 months ago by 43k • written 14.1 years ago by 3.4k
1,000 results • Page 3 of 20
Recent Votes
what's the genomic location and name of gene responsible for orange and black patches in calico cats
Comment: featureCounts --primary tag counting uniquely mapped reads and excludes multi-ma
Answer: Duplicate marking, read names, and the SRA
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Answer: Cellranger count error: Input FASTQ file ended prematurely
Recent Locations • All
United States, 2 minutes ago
Portugal, 2 minutes ago
United States, 6 minutes ago
United States, 8 minutes ago
United States, 8 minutes ago
Czechia, 9 minutes ago
France, 10 minutes ago
Recent Awards • All
Scholar to Ann ★ 2.4k
Popular Question to Rodolfo Adrián • 0
Scholar to damian.szk ▴ 70
Popular Question to alphaflylizard • 0
Scholar to GenoMax 141k
Popular Question to Shicheng Guo ★ 9.4k
Popular Question to DanielEB_fisk ▴ 20
Recent Replies
Comment: what's the genomic location and name of gene responsible for orange and black pa by Matthias Zepper 4.5k
It is not entirely off, but evidently also not correct. Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
> so a single Rscript could utilise multiple environments and versions How is that sane, let alone "better"? Also, why use `snap` for curl…
Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Normalized how?
Comment: Duplicate marking, read names, and the SRA by GenoMax 141k
With public data one has to work with what is there. If the information about position is absent then only thing that could be done is to l…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Or better yet. To have an R package that allows access to conda environments via "conda list env" so that environments can be switched with…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
If GPT is right then it says that: > The specific gene responsible for the orange and non-orange (black or > gray) fur colors in cats is t…
Comment: what's the genomic location and name of gene responsible for orange and black pa by Jean-Karim Heriche 27k
As far as I know the Orange locus hasn't been mapped to a gene. Maybe this paper will help in narrowing the search: https://www.ncbi.nlm.ni…
Comment: Duplicate marking, read names, and the SRA by Luka • 0
>Curios if there a reference for this? [Apparently it's not deprecated yet][1], but will be soon and the SRA intends for it to be at some …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
I prefer RStudio for new projects as well. The moment I need versions though, RStudio becomes a burden. I wish one could launch RStudio fro…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
According to ChatGPT: The gene responsible for the orange and black patches of fur in calico cats (and tortoiseshell cats) is the X-linked …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Certainly true. Switching versions is way simpler that way, at the cost of the familiarity of the Rstudio IDE - especially if the code is w…
Comment: Duplicate marking, read names, and the SRA by GenoMax 141k
> fastq-dump is deprecated Curios if there a reference for this? `fasterq-dump` seems to allow for parallel streams but `fastq-dump` is st…
Comment: Duplicate marking, read names, and the SRA by Luka • 0
>In many cases those remain recoverable using the -F option when you dump the data (cloud download not required) The -F option (or any equ…
Answer: Duplicate marking, read names, and the SRA by GenoMax 141k
To be specific, not every dataset in SRA loses the original identifiers. In many cases those remain recoverable using the `-F` option when …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
To use different versions of R and bioconductor, you don't really need RStudio. One can simply create new conda environments with the requi…
Traffic: 2350 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6