updated 16 days ago by
AshleeThomson
▴
70
•
written 6.1 years ago by
lauren.wahyudi
▴
50
17
votes
8
replies
12k
views
9 follow
9
votes
8
replies
5.6k
views
7 follow
1
vote
8
replies
3.4k
views
7
votes
8
replies
636
views
6 follow
0
votes
8
replies
559
views
28 days ago by
theclubstyle
▴
40
3
votes
8
replies
4.1k
views
1
vote
8
replies
3.3k
views
updated 21 days ago by
Ram
43k
•
written 5.6 years ago by
amitpande74
▴
20
2
votes
8
replies
501
views
1
vote
8
replies
380
views
updated 24 days ago by
Pierre Lindenbaum
161k
•
written 24 days ago by
marco.barr
▴
60
5
votes
8
replies
3.6k
views
0
votes
8
replies
486
views
updated 13 days ago by
Michael
54k
•
written 14 days ago by
emilydolivo97
▴
10
5
votes
8
replies
2.2k
views
7
votes
8
replies
630
views
12
votes
7
replies
6.9k
views
0
votes
7
replies
636
views
updated 11 days ago by
BioinfGuru
★
1.7k
•
written 20 days ago by
FJCF
•
0
1
vote
7
replies
15k
views
7 follow
3
votes
7
replies
568
views
23 days ago by
Begonia_pavonina
▴
150
1
vote
7
replies
881
views
updated 23 days ago by
Ram
43k
•
written 8 months ago by
Manuel Sokolov Ravasqueira
▴
100
1
vote
7
replies
398
views
2
votes
7
replies
650
views
5
votes
7
replies
2.7k
views
0
votes
7
replies
6.0k
views
4
votes
7
replies
578
views
7
votes
7
replies
831
views
updated 3 days ago by
Dunois
★
2.5k
•
written 4 days ago by
AdviceSeeker
•
0
2
votes
7
replies
5.6k
views
8 follow
updated 16 days ago by
geocarvalho
▴
360
•
written 5.1 years ago by
Fungsten
•
0
4
votes
7
replies
4.5k
views
updated 2 days ago by
进
•
0
•
written 3.9 years ago by
Peter Chung
▴
200
4
votes
7
replies
544
views
3
votes
7
replies
503
views
updated 13 days ago by
Zhenyu Zhang
★
1.2k
•
written 14 days ago by
enee
▴
10
3
votes
7
replies
377
views
2
votes
7
replies
674
views
updated 9 hours ago by
joe
▴
500
•
written 1 day ago by
quentinperriere
•
0
2
votes
7
replies
5.1k
views
9 follow
1
vote
7
replies
5.0k
views
updated 8 days ago by
Wubin
▴
40
•
written 3.4 years ago by
roy.granit
▴
880
7
votes
7
replies
3.4k
views
updated 27 days ago by
sgv
•
0
•
written 2.2 years ago by
sir.outman
▴
40
0
votes
7
replies
382
views
7
votes
7
replies
519
views
updated 6 days ago by
Matthias Zepper
4.5k
•
written 6 days ago by
4fzcgueyp5
•
0
11
votes
7
replies
988
views
updated 26 days ago by
Gordon Smyth
★
7.0k
•
written 11 weeks ago by
arvind.1
▴
10
3
votes
7
replies
951
views
3
votes
7
replies
1.0k
views
2
votes
7
replies
478
views
0
votes
7
replies
389
views
1
vote
7
replies
428
views
6
votes
7
replies
1.6k
views
8
votes
7
replies
6.9k
views
7
votes
7
replies
1.0k
views
0
votes
7
replies
455
views
updated 17 days ago by
LChart
3.9k
•
written 18 days ago by
farahnazir2
•
0
4
votes
7
replies
2.3k
views
4
votes
7
replies
524
views
10
votes
7
replies
7.1k
views
6 follow
updated 2 days ago by
george-hall-ucl
•
0
•
written 9.2 years ago by
win
▴
970
1
vote
7
replies
436
views
16 days ago by
gdfsnkfns
•
0
6
votes
7
replies
687
views
Recent Votes
Recent Locations •
All
France, just now
France/Nantes/Institut du Thorax - INSERM UMR1087, 1 minute ago
Spain, 1 minute ago
Germany, 3 minutes ago
United States, 4 minutes ago
France, 4 minutes ago
France, 7 minutes ago
Recent Awards •
All
Popular Question to
Michael
54k
Scholar to
Gordon Smyth
★
7.0k
Popular Question to
yueli7
▴
250
Popular Question to
Chirag Parsania
★
2.0k
Commentator to
GenoMax
141k
Recent Replies
Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
by
Pierre Lindenbaum
161k
> server so I cannot use Blat for this purpose.
blat is avilable as a standane tool: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86…
Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
by
b.contreras.moreira
▴
150
My favourite for this task would be [GMAP]( http://research-pub.gene.com/gmap ), which can produce GFF format with option `-f 2`.
It is…
Answer: Prediction of Ribosomal RNA Genes Using RNAmmer Software
by
colindaven
6.3k
Another alternative is the truly free implementation barrnap https://github.com/tseemann/barrnap. This is also installable via conda so qui…
Comment: Filtration Of Reads With Length Lower Than 30 From Bam
by
Hagen
▴
10
thanks! This saved me quite some time, I was about to write code to calculate the aligned length from the CIGAR. But this can be done with
…
Comment: Per base sequence content failed miserably
by
Kai Xin
•
0
will look into that. Thank you very much
Comment: Korean human genome reference file
by
SeoGyun
•
0
Thanks..... But I want to do imputation, so I have to make it as a vcf file, but the site only has a fatsa file....
Comment: miRNAs quantification using mirdeep2 tool
by
Ashok
•
0
thank you for your reply
https://github.com/rajewsky-lab/mirdeep2/blob/master/TUTORIAL.md
i saw this github tutorial for miRNA quantifica…
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
by
cmdcolin
★
3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: Removing duplicates
by
joe
▴
500
I'd try those OP @samuel recommends
My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do:
bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option.
Get the PDB ID's
$ ./get.sh "Mus musculus" AHR
4M4X
5NJ8
5V0L
8H77
Then use `curl` to g…
Traffic: 2423 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6