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1,000 results • Page
3 of 20
Sort: Votes
Rank
Views
Votes
Replies
88
votes
18
replies
58k
views
12 follow
Sequence length from Fasta
fasta
updated 3 months ago by
Ram
38k • written 8.4 years ago by
bongbang
▴ 80
88
votes
24
replies
4.7k
views
10 follow
Forum:
How To Be Helpful As A Biostar Moderator/Editor?
biostars
updated 6 weeks ago by
Ram
38k • written 10.1 years ago by
aidan-budd
1.9k
87
votes
13
replies
19k
views
9 follow
What Do Different Bioinformatics Positions Mean?
career
general
updated 7 weeks ago by
Ram
38k • written 13.0 years ago by
Yuri
★ 1.6k
87
votes
16
replies
20k
views
15 follow
Are we tricking ourselves with batch effect correction?
combat
batch-effect
sva
updated 8 weeks ago by
madbadradscientist
▴ 20 • written 7.8 years ago by
Christian
★ 3.0k
84
votes
16
replies
84k
views
9 follow
Number of mapped reads from BAM file
bam
sam
reads
mapping
updated 4 months ago by
bhanu.chandra1
▴ 50 • written 8.0 years ago by
Prakki Rama
★ 2.6k
84
votes
22
replies
3.5k
views
12 follow
Forum:
is fortran still used in bioinformatics?
FORTRAN
R
updated 22 days ago by
Ram
38k • written 3.8 years ago by
Manoj
▴ 180
83
votes
34
replies
15k
views
21 follow
Tutorial:
Enrichment Analysis, Clustering and Scoring with pathfindR
active-subnetwork
enrichment
pathway
R
updated 22 days ago by
Ram
38k • written 4.8 years ago by
egeulgen
★ 1.3k
83
votes
30
replies
5.5k
views
18 follow
Forum:
Optimal design for bioinformatics "lab" space?
design
lab-space
updated 9 months ago by
Ram
38k • written 8.0 years ago by
Casey Bergman
18k
82
votes
21
replies
15k
views
16 follow
Tutorial:
Gene Set Enrichment Analysis
microarray
enrichment
RNA-Seq
GSEA
updated 22 days ago by
Ram
38k • written 2.5 years ago by
Hamid Ghaedi
2.9k
82
votes
28
replies
28k
views
19 follow
Tutorial:
How to create a mutation landscape (waterfall) plot with GenVisR
BioConductor
GenVisR
Graphics
R
updated 7 weeks ago by
Ram
38k • written 7.1 years ago by
Obi Griffith
20k
82
votes
19
replies
12k
views
8 follow
Future Directions In Bioinformatics
subjective
career
updated 6 weeks ago by
Ram
38k • written 12.4 years ago by
Hranjeev
★ 1.5k
82
votes
21
replies
71k
views
13 follow
Tutorial:
How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
bcftools
samtools
htslib
updated 6 weeks ago by
cmdcolin
★ 2.9k • written 4.7 years ago by
otwtgin2010
▴ 540
82
votes
32
replies
6.5k
views
13 follow
Forum:
Shall We Go Back To Stackexchange?
meta
updated 5 weeks ago by
Ram
38k • written 10.4 years ago by
14134125465346445
★ 3.6k
81
votes
8
replies
7.8k
views
6 follow
Tutorial:
Current Topics in Genome Analysis 2014 (collection of educational lectures)
workshop
lectures
genomics
training
updated 25 days ago by
Ram
38k • written 8.8 years ago by
Malachi Griffith
19k
81
votes
39
replies
6.0k
views
11 follow
News:
State Of Biostar - Future Directions (January 2013)
biostars
updated 6 weeks ago by
Ram
38k • written 10.2 years ago by
Istvan Albert
97k
81
votes
23
replies
11k
views
10 follow
Transform A Pipeline Of R Scripts Into A Web Application
webservice
web
pipeline
galaxy
updated 11 months ago by
Ram
38k • written 12.7 years ago by
Giovanni M Dall'Olio
27k
81
votes
21
replies
4.1k
views
16 follow
Forum:
[UPDATE] Thrown into a Bioinformatics Position
bioinformatics
updated 14 days ago by
Ram
38k • written 6.8 years ago by
Sinji
★ 3.2k
80
votes
34
replies
3.9k
views
11 follow
Forum:
Authorship issues- how to resolve?
authorship
updated 12 weeks ago by
Ram
38k • written 7.8 years ago by
datanerd
▴ 520
80
votes
23
replies
4.3k
views
11 follow
Forum:
Are we facing a bioinformatician shortage?
salary
career
updated 22 days ago by
Ram
38k • written 8.4 years ago by
Christian
★ 3.0k
80
votes
2
replies
53k
views
Tutorial:
How To Ask Good Questions On Technical And Scientific Forums
how-to
updated 4 weeks ago by
Ram
38k • written 9.8 years ago by
Eric Normandeau
11k
79
votes
22
replies
81k
views
16 follow
How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Sequences In A Single File
next-gen
sequencing
fasta
rna
r
perl
updated 4 months ago by
Ram
38k • written 11.5 years ago by
Hamilton
▴ 290
79
votes
34
replies
7.7k
views
15 follow
Forum:
Do bioinformaticians often break molecular biologists' hearts by being the first author?
authorship
career
updated 14 hours ago by
Ram
38k • written 7.4 years ago by
sentausa
▴ 650
78
votes
31
replies
5.7k
views
14 follow
Forum:
Do Bad Questions Even Exist?
biostars
general
education
updated 6 weeks ago by
Ram
38k • written 12.1 years ago by
Chris Evelo
10k
78
votes
41
replies
28k
views
24 follow
Tutorial:
Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm
rna-seq
bioconductor
updated 4 months ago by
Acadia
• 0 • written 9.5 years ago by
Irsan
★ 7.7k
77
votes
8
replies
12k
views
13 follow
Which program, tool, or strategy do you use to visualize genomic rearrangements?
fusion-genes
visualizations
rearrangements
updated 6 months ago by
Ram
38k • written 7.5 years ago by
stianlagstad
★ 1.1k
77
votes
27
replies
49k
views
20 follow
How To Write Data In A Granges Object To A Bed File.
bed
updated 7 months ago by
Johan Zicola
▴ 70 • written 9.3 years ago by
Ram
▴ 180
77
votes
18
replies
43k
views
13 follow
Bioinformaticist Vs. Bioinformatician
subjective
updated 8 months ago by
Dan
• 0 • written 12.9 years ago by
Science_Robot
★ 1.1k
77
votes
22
replies
21k
views
14 follow
Assessing The Quality Of De Novo Assembled Data
assembly
next-gen
updated 6 months ago by
Ram
38k • written 10.8 years ago by
Prakki Rama
★ 2.6k
76
votes
86
replies
25k
views
20 follow
Tool:
Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates.
compression
bbmap
clumpify
pigz
storage
Tool
updated 3 months ago by
GenoMax
127k • written 6.3 years ago by
Brian Bushnell
18k
75
votes
70
replies
16k
views
18 follow
Tutorial:
Clustering of DAVID gene enrichment results from gene expression studies
enrichment
david
updated 17 days ago by
Ram
38k • written 5.1 years ago by
Kevin Blighe
85k
75
votes
14
replies
11k
views
10 follow
Tool:
karyoploteR: uncircle your genomes
R
Tool
dataviz
karyoploteR
NGS
updated 11 months ago by
Midge
• 0 • written 5.8 years ago by
bernatgel
★ 3.4k
75
votes
22
replies
49k
views
17 follow
How To Download All Sra Samples At Once ?
geo
sra
updated 8 days ago by
Ram
38k • written 9.1 years ago by
biorepine
★ 1.5k
74
votes
24
replies
52k
views
16 follow
How To Sort Bed Format File
bed
updated 5 months ago by
Pierre Lindenbaum
153k • written 10.1 years ago by
lyz10302012
▴ 430
74
votes
13
replies
65k
views
10 follow
Tutorial:
Machine Learning For Prediction of Relapse in Cancer - Part 2 - Building A Random Forest Classifier
r
cancer
classification
updated 5 months ago by
Ram
38k • written 9.4 years ago by
Nicholas Spies
★ 1.2k
74
votes
14
replies
28k
views
12 follow
Forum:
Bioinformatics Consulting Thoughts
consulting
updated 9 months ago by
Ram
38k • written 12.8 years ago by
Will
4.5k
73
votes
25
replies
98k
views
14 follow
How to count fastq reads
sequence
next-gen
fastq
reads
updated 9 months ago by
Ram
38k • written 7.9 years ago by
Chenglin
▴ 250
73
votes
14
replies
14k
views
15 follow
Tutorial:
List Of Bioinformatics Books
books
updated 7 weeks ago by
Ram
38k • written 9.9 years ago by
Medhat
9.5k
72
votes
18
replies
6.7k
views
17 follow
Forum:
What Is One Book Every Bioinformatician Should Read?
books
updated 4 weeks ago by
Ram
38k • written 9.8 years ago by
Philipp Bayer
7.7k
72
votes
20
replies
24k
views
11 follow
Parsing Ncbi Taxonomic Tree?
ncbi
taxonomy
python
tree
updated 3 months ago by
Ram
38k • written 11.4 years ago by
Prohan
▴ 350
72
votes
60
replies
23k
views
16 follow
Tutorial:
Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
1000genomes
PLINK
PCA
VCF
updated 7 weeks ago by
Ram
38k • written 5.6 years ago by
Kevin Blighe
85k
72
votes
48
replies
15k
views
15 follow
Tutorial:
For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Threshold?
ngs
alignment
bwa
updated 5 weeks ago by
Ram
38k • written 10.1 years ago by
lh3
33k
72
votes
28
replies
5.2k
views
10 follow
Forum:
Bioinformatics commercial services as a risk factor for scientific misconduct
commercial-services
ethics
misconduct
updated 9 months ago by
Ram
38k • written 8.2 years ago by
Angle45
▴ 90
72
votes
12
replies
3.7k
views
7 follow
Does Pre-Publishing Open Source Algorithms Hurt Chances Of Getting Published?
publication
algorithm
updated 8 months ago by
Ram
38k • written 11.6 years ago by
Martijn Van Iersel
▴ 570
72
votes
48
replies
6.9k
views
18 follow
What Kind Of Bioinformatics Tutorials Would You Like To See Online?
education
updated 6 weeks ago by
Ram
38k • written 12.0 years ago by
User 59
13k
71
votes
71
replies
24k
views
17 follow
Tool:
EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and labeling
volcano plot
ggplot2
ggrepel
bioconductor
Tool
updated 5 months ago by
hermidalc
▴ 40 • written 4.6 years ago by
Kevin Blighe
85k
71
votes
17
replies
31k
views
14 follow
How to know that your RNA-seq is stranded or not?
RNA-Seq
updated 10 weeks ago by
Ming Tommy Tang
★ 2.9k • written 8.9 years ago by
M K
▴ 600
70
votes
19
replies
4.6k
views
13 follow
Forum:
Thrown Into A Bioinformatics Position
computational-analysis
updated 8 months ago by
Ram
38k • written 7.5 years ago by
System
▴ 170
70
votes
20
replies
80k
views
15 follow
How To Get Ensembl Id (Gene, Transcript, Protein) Mapping Information?
ensembl
identifiers
mapping
updated 12 weeks ago by
Ram
38k • written 12.4 years ago by
Unode
▴ 180
70
votes
31
replies
25k
views
10 follow
Illumina Instrument Type from fastq?
fastq
updated 7 months ago by
GenoMax
127k • written 6.8 years ago by
andrew.j.skelton73
6.5k
70
votes
16
replies
8.9k
views
11 follow
Creating A New Bioinformatics Unit
core
career
updated 6 weeks ago by
Ram
38k • written 11.8 years ago by
Israel Barrantes
▴ 790
1,000 results • Page
3 of 20
Recent Votes
Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
SSPACE for scaffolding
Answer: Snakemake workflow for trimmomatic
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
A: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p
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Popular Question
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zhou_1228
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GenoMax
127k
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★ 23k
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Recent Replies
Comment: TCGA-BRCA tissue and RNAseq problem
by
pinheirofabiano
▴ 10
Go to https://portal.gdc.cancer.gov > Exploration > select TCGA and the cancer type you want > select case ID to download the files and hav…
Answer: Snakemake workflow for trimmomatic
by
antoine.fauchois92
• 0
Thank you very much for your reply ! It's working now !
Comment: Dependent p values
by
Eliza
▴ 20
@lchart I'm sorry for asking another of questions but I'm new to this field , can you please explain a little more how to use SKAT , saige…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
dare_devil
★ 1.7k
similar question [here][1], [here][2] and [here][3] [1]: https://support.bioconductor.org/p/54838/ [2]: https://support.bioconductor.…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
dare_devil
★ 1.7k
@genomax I have used the same platform file only. If you look at probe id and their corresponding `Gene Symbol` or `ENTREZ_GENE_ID` you can…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
GenoMax
127k
Where are you seeing this? [Platform file for this array][1] on GEO has these names uniquely assigned. [1]: https://www.ncbi.nlm.nih.go…
Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL
by
rpolicastro
11k
`Org.Mm.eg.db` is the mouse organism database, but your ENSEMBL IDs are for human genes. Mouse ensembl ids start with `ENSMUSG`. You proba…
Comment: Snakemake doesn't recognize output files even though they are created
by
DdogBoss
• 0
Yes, it completed the dry run. What other information do you need?
Comment: LDSC correlation calculate confidence intervals
by
YL
▴ 10
Based on my personal thought, I think the se from LDSC output probably needs to be transferred using Delta method based on Fisher transform…
Comment: LDSC correlation calculate confidence intervals
by
YL
▴ 10
Hi, Are you able to find an answer for this? I have the exact question! YL
Answer: Gene duplicate
by
ATpoint
71k
Use use ensembID_geneName as gene identifier to avoid that. These duplicate names exist as genes so removing them is somewhat not really da…
Comment: Gene duplicate
by
Ram
38k
> some Ensembl IDs that are the same Please show us some examples.
Comment: R package for functional enrichment and depletion analysis
by
rpolicastro
11k
What you're describing is a simulation of the hypergeometric test, so if you want an exact solution you could use the function `fora` from …
Comment: How to remove duplicate reads after ONT basecalling from fastq.gz files
by
Darrenjdd
• 0
Perfect! Thank you!
Comment: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p
by
Daniel
• 0
Hi, I am wondering if you ever got an answer for this question. Also, I am curious why it is true that "All the reads coming from one end…
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