updated 5.9 years ago by
Kevin Blighe
87k
•
written 7.7 years ago by
ta_awwad
▴
340
50
votes
33
replies
55k
views
10 follow
147
votes
34
replies
54k
views
17 follow
76
votes
22
replies
54k
views
17 follow
51
votes
11
replies
54k
views
7 follow
updated 2.5 years ago by
jared.andrews07
★
16k
•
written 4.4 years ago by
bioinformatics2020
▴
820
82
votes
27
replies
54k
views
23 follow
updated 8.0 years ago by
noirot.celine
▴
50
•
written 11.6 years ago by
thiago84naka
▴
130
16
votes
30
replies
54k
views
9 follow
42
votes
26
replies
54k
views
11 follow
50
votes
15
replies
53k
views
11 follow
updated 18 months ago by
beausoleilmo
▴
580
•
written 7.8 years ago by
MAPK
★
2.1k
91
votes
21
replies
53k
views
13 follow
updated 10.3 years ago by
earonesty
▴
250
•
written 11.5 years ago by
siddharth.sethi5
▴
270
10
votes
8
replies
53k
views
updated 4.8 years ago by
gpushpaganesan
•
0
•
written 5.2 years ago by
jordi.planells
▴
480
22
votes
4
replies
53k
views
98
votes
12
replies
53k
views
6 follow
92
votes
50
replies
52k
views
16 follow
updated 2.4 years ago by
BioNovice247
▴
20
•
written 6.4 years ago by
rachel.kubik12
▴
220
0
votes
3
replies
52k
views
Tutorial:
Installation VMD on LINUX_64
updated 12 months ago by
Ram
43k
•
written 7.8 years ago by
Hassan Rasouli
▴
10
48
votes
19
replies
52k
views
11 follow
35
votes
5
replies
52k
views
87
votes
25
replies
52k
views
21 follow
42
votes
16
replies
52k
views
10 follow
updated 2.2 years ago by
Alejandro Miguel
▴
10
•
written 7.4 years ago by
thustar
▴
130
44
votes
7
replies
52k
views
87
votes
37
replies
51k
views
20 follow
4
votes
1
reply
51k
views
30
votes
20
replies
51k
views
11 follow
updated 11.6 years ago by
Alex Reynolds
35k
•
written 11.6 years ago by
dfernan
▴
760
37
votes
8
replies
51k
views
11 follow
23
votes
11
replies
51k
views
10
votes
5
replies
51k
views
updated 7.7 years ago by
keith.hughitt
▴
280
•
written 7.7 years ago by
nkabo
▴
80
47
votes
3
replies
51k
views
27
votes
15
replies
50k
views
16 follow
36
votes
4
replies
50k
views
updated 3.0 years ago by
Ram
43k
•
written 9.7 years ago by
komal.rathi
★
4.1k
66
votes
19
replies
50k
views
17 follow
updated 10 months ago by
Ram
43k
•
written 11.2 years ago by
14134125465346445
★
3.6k
25
votes
5
replies
50k
views
updated 4.8 years ago by
Samir
▴
200
•
written 10.9 years ago by
samwise.techno
▴
50
57
votes
15
replies
50k
views
11 follow
149
votes
70
replies
50k
views
20 follow
updated 7 months ago by
Raheleh
▴
260
•
written 6.4 years ago by
Kevin Blighe
87k
60
votes
15
replies
50k
views
11 follow
11
votes
4
replies
50k
views
updated 7.9 years ago by
natasha.sernova
★
4.0k
•
written 7.9 years ago by
hnp21
▴
50
125
votes
46
replies
50k
views
21 follow
13
votes
5
replies
50k
views
7 follow
updated 2.6 years ago by
krassowski.michal
▴
180
•
written 10.9 years ago by
Sheila
▴
420
6
votes
7
replies
50k
views
24
votes
7
replies
50k
views
updated 11.9 years ago by
Khader Shameer
18k
•
written 11.9 years ago by
aprathke
▴
140
56
votes
52
replies
49k
views
12 follow
29
votes
10
replies
49k
views
updated 10.1 years ago by
Chris Fields
★
2.2k
•
written 10.1 years ago by
fbrundu
▴
350
29
votes
9
replies
49k
views
16
votes
8
replies
49k
views
9 follow
updated 5.1 years ago by
liangj
•
0
•
written 11.9 years ago by
jill.mckay
▴
30
66
votes
9
replies
49k
views
7 follow
23
votes
22
replies
49k
views
6 follow
52
votes
21
replies
49k
views
11 follow
11
votes
1
reply
49k
views
updated 4.7 years ago by
restonpiston
▴
60
•
written 5.1 years ago by
vinayjrao
▴
250
66
votes
23
replies
49k
views
8 follow
updated 29 days ago by
Getnet Tesfaw
•
0
•
written 6.4 years ago by
1769mkc
★
1.2k
71
votes
15
replies
48k
views
10 follow
4
votes
1
reply
48k
views
5
votes
7
replies
48k
views
updated 16 months ago by
Ram
43k
•
written 8.8 years ago by
bsmith030465
▴
240
Recent Votes
Recent Locations •
All
Japan, just now
Australia, 2 minutes ago
Mexico, 11 minutes ago
India, 11 minutes ago
United States, 16 minutes ago
Canada, 17 minutes ago
Bologna, 19 minutes ago
Recent Awards •
All
Teacher to
Mensur Dlakic
★
27k
Popular Question to
wiscoyogi
▴
40
Popular Question to
tien
▴
10
Commentator to
Alex Reynolds
35k
Popular Question to
haiying.kong
▴
360
Popular Question to
Buffo
★
2.4k
Popular Question to
jon.brate
▴
290
Recent Replies
Answer: gene body coverage with RSeqQC
by
jkim
▴
170
http://qualimap.conesalab.org/doc_html/index.html
Never tried rseqc, but qualimap provides a gene body coverage plot also.
Comment: How to get the reference panel sites for TOPMed hg37 and 38
by
bk11
★
2.3k
You can simply impute your genotyped data in TOPMed server. In that way you do not have to deal with downloading the reference panels (not …
Answer: Using adonis to include a random effect
by
LChart
3.9k
> why the first model doesn't have stats for both variables?
Your variables are multicollinear. This will always be true if you have mul…
Comment: How to row normalize a matrixplot?
by
bioinfo
▴
150
Thank you. That is what I ended up doing.
Comment: bash script
by
Ram
43k
What "error code at the top" are you talking about? Error code in response to the `srun -N 1 -t 0:01:00 bash -c "uname -a"` command? Also, …
Answer: how to get the variance explained by the independent variable from multivariate
by
LChart
3.9k
More explicitly:
```R
G <- mdmr::gower(distance.matrix)
eig <- eigen(G)
U <- eig$vectors ## this is the MDS embedding matrix
lambd…
Comment: bash script
by
bestone
▴
30
You write this "I noticed there may be a few parameters required for a SLURM job that could be missing from your script (partition to use, …
Comment: RNAseq 1 control 2 different treatment
by
sansan_96
▴
70
I think what you should do is do differential expression for your two contrasts: treatment 1 vs control and treatment 2 vs control. DESeq2 …
Comment: how to get the variance explained by the independent variable from multivariate
by
leranwangcs
▴
120
Thanks for your response! I have no statistics background so a bit hard to figure our the equation you provide with. I just want to find so…
Comment: Extracting information from gff3 file produced by augustus
by
Istvan Albert
100k
you should be more specific as to what you are trying to do.
in general parsing a GFF file, while error prone and annoying it is reasonabl…
Comment: Best way to deal with overlapping read names in merged BAM files
by
GenoMax
141k
See: https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
`\t` is tab
<!-- this is a test -->
Comment: Best way to deal with overlapping read names in merged BAM files
by
shpak.max
▴
50
Thanks. If I understand correctly, this adds ID1 to the rg header in the first bam, etc. Could you please explain the syntax of the tsM:SAM…
Comment: Best way to deal with overlapping read names in merged BAM files
by
Pierre Lindenbaum
161k
not tested:
samtools addreplacerg -r "@RG\tID:ID1\tSM:SAMPLE1 -O BAM -o new1.bam old1.bam
samtools addreplacerg -r "@RG\tID:ID2\tSM:SAM…
Comment: Best way to deal with overlapping read names in merged BAM files
by
shpak.max
▴
50
Could you please direct me to an example which uses addreplacerg across an entire bamfile (i.e. I would need to add a read group tag for ea…
Answer: Best way to deal with overlapping read names in merged BAM files
by
Pierre Lindenbaum
161k
> I'm not sure how and where to best implement the suggested corrections of fixing the SM tag
use to change the read group of one or more …
Traffic: 1584 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6