Limit : this week
all time today this week this month this year
224 results • Page 4 of 5
Sort: replies
Rank Views Votes Replies
0
votes
1
reply
193
views
Java class error message when using BBDuk
rna-seq bbduk
updated 2 days ago by 136k • written 2 days ago by • 0
0
votes
1
reply
184
views
Is GeSeq currently unavailable?
GeSeq
updated 2 days ago by 136k • written 2 days ago by • 0
0
votes
1
reply
198
views
WGCNA Dendrogram Branch missing from modules
WGCNA dendrogram hdWGCNA
updated 2 days ago by 3.5k • written 2 days ago by • 0
0
votes
1
reply
156
views
Java error while running HiCDC overview code
R Juicer HiC HiCDCPlus
updated 6 days ago by 20k • written 6 days ago by • 0
0
votes
1
reply
152
views
Annotation GTF/GFF Arabidopsis thaliana
Arabidopsis GFF GTF Annotation
6 days ago by enriquesan • 0
0
votes
1
reply
237
views
Tutorials for Spatial Transcriptomics
ST-Seq Scanpy Seurat
updated 1 day ago by ▴ 50 • written 2 days ago by ▴ 90
1
vote
1
reply
152
views
What's the acceptable threshold in Quality Assessment for Genome Assemblies?
control genome QUAST quality assembly kbase
updated 1 day ago by ★ 1.3k • written 1 day ago by • 0
0
votes
1
reply
203
views
Cibersort input data
cibersort
updated 23 hours ago by • 0 • written 2 days ago by • 0
1
vote
1
reply
293
views
Forum: want to work in open source project/project in bioinformatics
project
updated 6 days ago by 41k • written 16 days ago by • 0
0
votes
1
reply
215
views
Are 10x cellranger-arc ATAC bam files deduplicated?
10x single-cell
updated 6 days ago by 41k • written 9 days ago by • 0
0
votes
1
reply
149
views
News: Course: Genome Assembly and Annotation
Biodiversity Genome-Assembly Genome-Annotation Long-reads
updated 6 days ago by 41k • written 11 days ago by ★ 2.4k
0
votes
1
reply
352
views
News: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS RNA-Seq Workshop
4 days ago by David Langenberger 10k
0
votes
1
reply
161
views
absolute running error: Error in if (!is.na(res)) { : the condition has length > 1
ABSOLUTE error
4 days ago by qiuting • 0
0
votes
1
reply
184
views
Cell ranger multi for demultiplexing FB files and GEX files
cellranger
updated 4 days ago by 41k • written 5 days ago by • 0
0
votes
1
reply
197
views
CHIPSEQ Analysis , DiffBind Parameters
DiffBind ChIP-seq
updated 4 days ago by ★ 2.0k • written 11 days ago by • 0
1
vote
1
reply
229
views
How to use Nextflow to call scripts from different environments?
anaconda conda nextflow
updated 4 days ago by 41k • written 5 days ago by ▴ 710
1
vote
1
reply
1.3k
views
How to interpret the discrepancy of assignment rate in featurecounts using forward and reverse strand protocols
RNAseq
updated 5 days ago by • 0 • written 7 weeks ago by ▴ 20
0
votes
0
replies
118
views
RNA secondary structure for GRCH38 transcriptome
dot-bracket-notation human RNA-secondary-structure GRCH38
6 days ago by Saad Khan ▴ 420
0
votes
0
replies
144
views
Infer ancestry for RNA-seq data
plink admixture ancestry
updated 2 days ago by 41k • written 2 days ago by • 0
0
votes
0
replies
142
views
how to run the compare_genomes for comparative analysis
genome orthofinder evolution
2 days ago by rj.rezwan • 0
0
votes
0
replies
110
views
Need to PrepSCTfindMarker again after subset if the original object has already been normalized?
FindMarker Seurat
6 days ago by Adrian • 0
0
votes
0
replies
501
views
Transcript Assembly for Multiple Species Using StringTie and Orthogroup Discovery using OrthoFinder
Species StringTie Orthogroups Transcript Assembly
2 days ago by dtnondorf • 0
0
votes
0
replies
116
views
ASEReadCounter output wrong number of coverage
ASEReadCounter
5 days ago by junhuili • 0
0
votes
0
replies
137
views
News: Course - Introduction to R Shiny
R Data-Visualisation Shiny
updated 6 days ago by 41k • written 19 days ago by ★ 2.4k
0
votes
0
replies
106
views
GAPIT p-value significance threshold
GAPIT p-value GWAS
6 days ago by Clayton • 0
0
votes
0
replies
151
views
Extract upstream and downstream 50bp nontemplated sequences from a position
search sequences nontemplated motif
6 hours ago by Ty • 0
0
votes
0
replies
145
views
News: Course - RNAseq in non-model organisms
Pacbio RNA-seq Nanopore
updated 6 days ago by 41k • written 21 days ago by ★ 2.4k
0
votes
0
replies
126
views
News: University of Connecticut Single Cell RNA-seq Workshop December 12-15, 2023
expression singlecell rnaseq
4 days ago by mia.nahom ▴ 10
0
votes
0
replies
107
views
cosinoRmixedeffect: an R package for mixed-effects cosinor models
interactionmodel cosinor mixedeffect circadian
4 days ago by Agnia • 0
0
votes
0
replies
107
views
Tool: retroSeeker: discovering novel retrotransposons in humans and any species
element Expression Evolution Retrotransposon Mobile
4 days ago by lsp03yjh ▴ 850
0
votes
0
replies
112
views
Test for multiplicative effect in mendelian randomization?
R mendelian_randomization GWAS
2 days ago by clairvoyant • 0
0
votes
0
replies
205
views
Haplotype network/phylogeny of 1000 genomes project
haplotype 1000Genomes phylogeny
updated 3 days ago by 41k • written 5 months ago by • 0
0
votes
0
replies
701
views
Generating variant read count matrix, total read count matrix and binary/ternary mutaion matrix for SNV from scDNAseq FASTQ files
SNV mutationMatrix tumorPhylogeny scDNAseq mutaion
4 days ago by supernovamik • 0
0
votes
0
replies
95
views
how to run GSEA with spesific background
RNA-seq GSEA
updated 3 days ago by 41k • written 4 days ago by • 0
0
votes
0
replies
105
views
megablast taxonomy assign in blobtools
blobtools
5 days ago by bs • 0
0
votes
0
replies
195
views
News: GWAS course
R GWAS
updated 6 days ago by 41k • written 17 days ago by ★ 2.4k
1
vote
0
replies
128
views
Tutorial: CITEseq tutorial
CITEseq Alevin Seurat
5 days ago by Ming Tommy Tang ★ 3.6k
0
votes
0
replies
104
views
News: New version of ElasticBLAST (1.2.0) available from NCBI
ElasticBLAST NCBI BLAST
3 days ago by PeterC_NCBI ▴ 370
0
votes
0
replies
110
views
use GEOparse to download series supplemental files?
gse geoparse python geoquery geo
3 days ago by mk ▴ 290
0
votes
0
replies
120
views
Expression differs when running plotTranscripts vs boxplot of FPKM or coverage values (R)?
R
updated 6 days ago by 41k • written 6 days ago by • 0
0
votes
0
replies
123
views
Confusing results from FindConservedMarkers in Seurat
10XGenomics
3 days ago by pm2012 ▴ 140
0
votes
0
replies
106
views
Differing output: vcftools' --weir-fst-pop and R hierfstats package's varcomp.glob()
vcftools hierfstats fst
6 days ago by S • 0
0
votes
0
replies
93
views
Using Metagenome Samples for HNSCC analysis
Linux DESEQ2 SRA Bioinformatics ComputationalBiology
1 day ago by Ozymandeus ▴ 30
0
votes
0
replies
169
views
News: Course - Introduction to Bayesian Data Analysis
R Statistics Bayesian Regression-Modeling
updated 6 days ago by 41k • written 5 weeks ago by ★ 2.4k
0
votes
0
replies
32
views
Need Help Mapping Probe IDs to Gene Symbols
microarray
2 hours ago by maryam.kh • 0
0
votes
0
replies
97
views
Tutorial: download metadata using GEOquery
biology GEO metadata computational
1 day ago by Ming Tommy Tang ★ 3.6k
0
votes
0
replies
171
views
News: Course: Genome Assembly using Oxford Nanopore Sequencing
Genome-Assembly Nanopore
updated 6 days ago by 41k • written 28 days ago by ★ 2.4k
0
votes
0
replies
100
views
inverse normal p-value combination results giving NaN.
inverse meta-Analysis p-value rnaseq normal
4 days ago by sehriban.buyukkilic • 0
0
votes
0
replies
100
views
Job: Postdocs in Anaerobic Microbial Consortia – DTU Chemical Engineering
Microbiology microbiology Biochemistry Anaerobic
4 days ago by info ▴ 80
0
votes
0
replies
150
views
Converting txt.gz to PLINK bim
S-LDSC file LDSC format
3 days ago by X • 0
224 results • Page 4 of 5
Recent Votes
Are Variable Features ranked in seurat?
Answer: protein clustering and pangenome tools
Answer: get gene name from rsID
Answer: get gene name from rsID
Comment: MinKNOW software installation doubt for MinION Nanopore sequencing
Comment: Minimum requirements for a laptop to do rna seq analysis
Best-suited unit of expression to perform between-sample comparison
Recent Locations • All
United States, just now
USA, just now
EMBL-EBI, just now
Hong Kong, 1 minute ago
Germany, 1 minute ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 1 minute ago
Spain, 1 minute ago
Recent Awards • All
Scholar to Istvan Albert 99k
Popular Question to ta_awwad ▴ 340
Teacher to Dave Carlson ★ 1.4k
Popular Question to iamsmor • 0
Popular Question to Barista ▴ 10
Teacher to dsull ★ 5.1k
Popular Question to Sara ▴ 30
Recent Replies
Answer: Autocompleting paths within scripts by Michael 53k
Not really a Bioinformatics question but generally very useful: [vim can do that][1] [type some prefix of path] <Ctrl-x><Ctrl-f> ![e…
Answer: How can I obtain the DNA sequences of each CDS for several genbank files? by Raphaëlle • 0
Hello, Thank you very much for your quick reply. That was indeed the issue! Another question: is there a simple way of automating this …
Answer: Cluster sub-set analysis using Seurat by j.gleixner ▴ 10
There now is also `Seurat::FindSubCluster`
Comment: How can i control the cluster number in scRNASeq clustering by Seurat package by j.gleixner ▴ 10
There is now also Seurat::BuildClusterTree that makes this easier.
Answer: How can i control the cluster number in scRNASeq clustering by Seurat package by j.gleixner ▴ 10
If you want to get a certain number of clusters without resorting to trying different settings for the resolution parameter, you can firs…
Answer: How to speed-up to contruct phylogenetic tree by Nelo ▴ 20
I will also try this `fasttree`
Comment: i ues schicexplorer's hicbuildmatrix code complains that two sam files do not ha by 1125195245 • 0
I tried using bowtie2's --reorder command to output a sam file for each of the two files, and then used both sam files to build the matrix,…
Comment: How to speed-up to contruct phylogenetic tree by Nelo ▴ 20
I used MEGA CC (comand line option) but there is no option to specify threads in its `--help` manual . And default thread is 4
Comment: How to speed-up to contruct phylogenetic tree by Nelo ▴ 20
The average length of fasta sequences is ~300aa length. I can't exclude any sequences as I have to provide them nomenclature aslo on the ba…
Comment: How to speed-up to contruct phylogenetic tree by Nelo ▴ 20
I used Raxml for a trial fasta file of about only 33 sequences as: `raxmlHPC-PTHREADS-AVX -f a -T 80 -m PROTGAMMAWAG -n test1 -s bittergou…
Comment: i ues schicexplorer's hicbuildmatrix code complains that two sam files do not ha by ATpoint 78k
It's bad practice to add the question to the title and only a screenshot as question. The error is clear. Did you try what it suggests, and…
Answer: What apps can read large FASTQ files on Windows? by i.sudbery 18k
There are a number of bioinformatics workbenches that will run under windows, and will allow you to analyse fastq files. Some examples …
Comment: Multi-factor designs in DiffBind by g.persic1991 • 0
Dear Rory, thanks a lot for your help. It's work, indeed now I'm able to find (as expected) more DB. The only things "strange" is that I…
Comment: How to cluster .faa files? by dthorbur ▴ 890
I agree with Joe, it's hard to tell what you want. But here are some general suggestions: 1. [OrthoFinder](https://github.com/davidemms/Ort…
Comment: Is interleaved Fastq files the same as interlaced fastq by Joe 21k
No need to post a comment, you can just edit your original post after the fact
Traffic: 2792 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6