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679 results • Page 4 of 14
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2
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0
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881
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News: Summer Courses @ Edinburgh Genomics
workshop training courses python RNA-Seq
updated 4 days ago by 39k • written 4.0 years ago by ▴ 40
2
votes
2
replies
112
views
how to sort unique seq from fasta files
fasta
updated 8 hours ago by 8.1k • written 9 hours ago by • 0
2
votes
1
reply
1.4k
views
Job: Bioinformatics scientist positions in Lund Sweden (last day application)
bioinformatician
updated 2 days ago by 39k • written 3.8 years ago by 7.9k
2
votes
0
replies
868
views
News: Metagenomics and Metabarcoding Course @ Edinburgh Genomics
metagenomics metabarcoding course workshop
updated 3 days ago by 39k • written 3.9 years ago by ▴ 40
2
votes
4
replies
316
views
PacBio Pipeline and Tools for Variant Call
longread pacbio whatshap pbmm2
3 days ago by Kiran ▴ 80
2
votes
0
replies
738
views
News: The BioCompute Object App-a-thon is now live!
app-a-thon pipeline precisionFDA
updated 5 days ago by 39k • written 4.1 years ago by ▴ 150
2
votes
2
replies
111
views
how to use Hemtools bed2vcf?
vcf linux conversion bed
updated 6 days ago by 154k • written 6 days ago by ▴ 10
2
votes
3
replies
167
views
What type of normalization did they use in this article?
normalization TPM r
updated 4 days ago by 39k • written 5 days ago by ▴ 100
2
votes
7
replies
461
views
What is "pident" (percentage of identical matches) in the "Diamond" protein alignment ?
protein alignment
updated 2 days ago by ★ 2.9k • written 2 days ago by ▴ 70
2
votes
0
replies
784
views
News: R/Bioconductor for Mass Spectrometry and Proteomics course in Berlin
R Proteomics Bioconductor
updated 2 days ago by 39k • written 3.8 years ago by ★ 2.3k
2
votes
3
replies
226
views
NCBI refseq ids to uniprot ids
refseq Uniprot
updated 5 days ago by 39k • written 6 days ago by • 0
2
votes
0
replies
724
views
Why are there multiple bax/fastq files associated with my PacBio run?
genome PacBio WGS sequencing
updated 5 days ago by 39k • written 4.1 years ago by ▴ 20
2
votes
1
reply
477
views
How to enter bioinformatics programme
career
updated 2 days ago by 39k • written 3.8 years ago by • 0
2
votes
5
replies
414
views
Cutadapt error: too many parameters.
cutadapt parallel bash
6 days ago by DanielEB_fisk • 0
2
votes
0
replies
720
views
News: Bioinformatic courses in Canada (Quebec City) this September
Unix Genomics GWAS R Python
updated 3 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
3
replies
1.2k
views
Job: Senior bioinformatician, Auckland, New Zealand (3 yrs fixed-term)
virus software database sequencing
updated 3 days ago by 39k • written 3.9 years ago by ▴ 830
2
votes
4
replies
197
views
MACS2 peak calling
MACS2 peak-calling
updated 4 days ago by 11k • written 5 days ago by • 0
2
votes
0
replies
1.5k
views
News: Call for Abstracts: BOSC 2019: Bioinformatics Open Source Conference
BOSC Conference Open-Source
updated 5 days ago by 39k • written 4.2 years ago by ★ 2.2k
2
votes
0
replies
1.2k
views
Tutorial: Free Book : Computational Biology of a cell signalling pathway using R
cell-signalling R Computational-Biology
updated 4 days ago by 39k • written 17 months ago by ▴ 20
2
votes
3
replies
663
views
Forum: What are the major types of choices that affect an analysis?
reproducibility
updated 5 days ago by 39k • written 4.1 years ago by 21k
2
votes
2
replies
774
views
News: Interested in Machine Learning?
deep-learning machine-learning
updated 5 days ago by 39k • written 4.1 years ago by ★ 2.3k
2
votes
0
replies
2.6k
views
Job: 15 PhD positions in Quantitative Biology, Lausanne, Switzerland
switzerland phd quantitative-biology
updated 2 days ago by 39k • written 3.7 years ago by ▴ 740
2
votes
0
replies
1.3k
views
Job: Seeking bioinformaticians and data engineers for product research study
RNA-Seq cwl aws workflows
updated 2 days ago by 39k • written 3.7 years ago by ▴ 30
2
votes
8
replies
1.2k
views
How to append two fasta files?
unix fasta python
updated 4 days ago by 39k • written 4.0 years ago by ▴ 100
2
votes
4
replies
234
views
Filter VCF file for variant alleles
VCF variants bcftools vcftools
updated 4 days ago by 39k • written 4 days ago by • 0
2
votes
2
replies
3.4k
views
How to download time series expression datasets?
matlab time-series microarray gene-expression
updated 5 days ago by 39k • written 7.6 years ago by ▴ 60
2
votes
6
replies
2.2k
views
6 follow
Job: Seeking Freelance bioinformatician
association burden gwas
updated 4 days ago by 39k • written 4.0 years ago by • 0
2
votes
2
replies
175
views
How to extract haplotype data from phased bcf files
gwas vcf bcftools wgs phasing
3 days ago by Lynne-95 • 0
2
votes
1
reply
2.9k
views
Job: Bioinformatics Consultant: flexible hours, exciting science: Diamond Age Data Science, Boston, USA (open to remote working)
bioinformatics-consultant
updated 4 days ago by 39k • written 4.0 years ago by ▴ 20
2
votes
6
replies
1.0k
views
Time series RNA seq design query
RNA-seq time-series deseq2
updated 5 days ago by 39k • written 18 months ago by • 0
2
votes
3
replies
313
views
Low mapping percentage
mapping STAR RNAseq
1 day ago by Sib ▴ 40
2
votes
2
replies
178
views
Forum: Colleges
Colleges india universities
updated 4 days ago by 39k • written 5 days ago by • 0
2
votes
3
replies
2.2k
views
Lift over based on physical position from GRCh37 build 137 to GRCh37 build 132
GRCh37 SNP freeze build137 LiftOver
updated 3 days ago by 21k • written 7.5 years ago by ▴ 150
2
votes
0
replies
861
views
News: Registration open for Galaxy Community Conference (GCC) 2019
galaxy
updated 5 days ago by 39k • written 4.2 years ago by 103k
2
votes
0
replies
916
views
News: #NGSchool2019: Machine Learning for Biomedicine
ngschool workshop training summer-school next-gen
updated 5 days ago by 39k • written 4.1 years ago by ▴ 290
2
votes
2
replies
121
views
How to make the profile line of `deepTools::plotHeatmap` more smooth?
plotHeatmap deepTools
13 hours ago by Dan ▴ 120
2
votes
3
replies
457
views
ATAC peak-calling: same peak ID across multiple experimental conditions?
Genrich ATAC
updated 3 days ago by ▴ 120 • written 23 days ago by • 0
2
votes
0
replies
1.3k
views
News: UCSC Genome Browser JSON API
ucsc json api
updated 4 days ago by 39k • written 3.9 years ago by 154k
2
votes
0
replies
609
views
News: Speciation Genomics course in Canada (September 2019)
R SNP next-gen
updated 4 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
1.1k
views
Job: Scientific writer for GATK at Broad Institute Data Sciences Platform
gatk
updated 2 days ago by 39k • written 3.8 years ago by ★ 1.2k
2
votes
1
reply
1.8k
views
How do I apply a patch to hg38?
reference human freeze hg38 patch
updated 3 days ago by 21k • written 5.6 years ago by • 0
2
votes
1
reply
1.4k
views
News: Meet Dr. Giovanni Marco Dall'Olio
NGS training RNA-Seq
updated 5 days ago by 39k • written 4.2 years ago by 9.9k
2
votes
3
replies
129
views
Gene enrichment analysis
Go enrichment r gene
updated 50 minutes ago by 129k • written 8 hours ago by • 0
2
votes
0
replies
1.6k
views
News: Course - Metabolomics - Berlin, 25-29 November 2019
Metabolomics R Bioconductor
updated 4 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
3
replies
408
views
What is the best way to clean bulk RNA-seq data?
normalization TPM r
updated 3 days ago by ▴ 120 • written 6 days ago by ▴ 100
2
votes
0
replies
666
views
News: Course: RNA-seq Analyses in non-model organisms (Berlin 11-15 November 2019)
gene RNA-Seq next-gen
updated 4 days ago by 39k • written 4.0 years ago by ★ 2.3k
2
votes
12
replies
2.8k
views
6 follow
Using RPK counts as DESeq2 input
deseq2
updated 4 days ago by 39k • written 6.0 years ago by ▴ 30
2
votes
3
replies
1.2k
views
mutational signatures in different tumor samples
somatic mutation mutational signature
updated 3 days ago by ★ 2.9k • written 4.4 years ago by ▴ 20
2
votes
2
replies
6.7k
views
GATK -Xmx4G and -Xmx8G
GATK HaplotypeCaller
updated 3 days ago by 39k • written 3.9 years ago by ▴ 70
2
votes
2
replies
181
views
bioinformatic analysis protocol performed by CD Genomics
Genomics CD analysis bioinformatic Protocol
updated 3 days ago by ▴ 80 • written 4 days ago by ▴ 10
679 results • Page 4 of 14
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A: Problem regarding Software installation.
Answer: How To Predict Pseudogenes In A Genome
A: How To Predict Pseudogenes In A Genome
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A: How To Predict Pseudogenes In A Genome
How To Predict Pseudogenes In A Genome
C: parsing fasta file
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Recent Replies
Answer: Installation of PPFinder by GenoMax 129k
Since the software is still [**listed on the Brent lab**][1] website your best bet would be to email the investigator and ask that they fix…
Comment: How to calculate TPM from featureCounts output by rpolicastro 12k
If you want to go that route, yes.
Comment: Difference between USCS exon coordinates and ensembl by ATpoint 72k
What did you download from UCSC? 1-off usually means one file is zero-based and the other 1-based. BED files from UCSC are 0-based, Ensembl…
Comment: Alignment of case vs. control from different origin by sativus • 0
Thank you kindly for the explanation, it is highly appreciated. I suppose i was a bit confused as you quite often see people validating the…
Answer: Gene enrichment analysis by nux ▴ 10
Hello. For this you have to select 'hyper' as your method and then provide a complete list of genes which both include the candidate and no…
Comment: CNNScoreVariants Error by bestone ▴ 10
Thank you for replying I updated it worked but it gives another Error A USER ERROR has occurred: Invalid argument ' -V'.
Comment: Impute haplotypes (ImputePipelinePlugin) execution error - PHG by jrodrigu • 0
Thank you so much. I made the suggested changes. However, I still have the same problem. Please check the new log file. https://github.c…
Comment: Getting same value for start and end position, "DNA methylation" by ATpoint 72k
That's a comment, not an answer, please use `ADD COMMENT`.
Comment: Getting same value for start and end position, "DNA methylation" by bioinfo_ga ▴ 50
Are you working on bisulphite kind of data or chipseq ????
Answer: How to calculate TPM from featureCounts output by bioinfo_ga ▴ 50
hi , You can use a python package rnanorm [https://pypi.org/project/rnanorm/]. The input required are your read count values from feature …
Comment: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by by biofalconch ▴ 580
Hey, if you arelady have the barcodes, you could use samtools `samtools view -h -b -f CB:Z:TAAGAGATCCTATGTT > TAAGAGATCCTATGTT.bam` Hope…
Answer: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by by biofalconch ▴ 580
Here is a code that should work, but just like everyone else in the comments I'm a little confused why would you need to separate them: …
Comment: Make a BedGraph file by kirillkirilenko ▴ 10
It works, thank you!
Comment: CNNScoreVariants Error by Pierre Lindenbaum 154k
check you have a complete environment for GATK , including the python module "keras". https://gatk.broadinstitute.org/hc/en-us/articles/360…
Comment: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by by Cathal • 0
Did you have any luck in splitting the BAM file based on the 10x cell barcode? I would like to split a BAM file based to only include 5 spe…
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