1
vote
1
reply
158
views
0
votes
1
reply
152
views
3
votes
1
reply
152
views
updated 2 days ago by
Ram
41k
•
written 3 days ago by
Confused_human
▴
20
0
votes
1
reply
151
views
0
votes
2
replies
151
views
0
votes
0
replies
150
views
0
votes
3
replies
150
views
updated 20 hours ago by
Rory Stark
★
2.0k
•
written 21 hours ago by
Sam
▴
300
0
votes
1
reply
148
views
3 days ago by
enriquesan
•
0
0
votes
0
replies
147
views
0
votes
1
reply
147
views
0
votes
3
replies
146
views
0
votes
1
reply
144
views
3 days ago by
aanchal.yadav
•
0
0
votes
3
replies
143
views
0
votes
1
reply
141
views
updated 3 days ago by
Ram
41k
•
written 7 days ago by
carlopecoraro2
★
2.4k
0
votes
1
reply
141
views
0
votes
1
reply
140
views
updated 20 hours ago by
Ram
41k
•
written 1 day ago by
Confused_human
▴
20
0
votes
0
replies
139
views
updated 3 days ago by
Ram
41k
•
written 18 days ago by
carlopecoraro2
★
2.4k
0
votes
2
replies
136
views
0
votes
0
replies
135
views
1
vote
1
reply
133
views
0
votes
0
replies
131
views
updated 3 days ago by
Ram
41k
•
written 16 days ago by
carlopecoraro2
★
2.4k
1
vote
1
reply
131
views
updated 4 days ago by
GenoMax
136k
•
written 4 days ago by
waqaskhokhar999
▴
150
2
votes
0
replies
131
views
0
votes
0
replies
129
views
0
votes
0
replies
118
views
0
votes
0
replies
118
views
0
votes
0
replies
117
views
0
votes
0
replies
114
views
updated 3 days ago by
Ram
41k
•
written 3 days ago by
boone5jones
•
0
0
votes
0
replies
114
views
1
vote
0
replies
112
views
Tutorial:
CITEseq tutorial
1 day ago by
Ming Tommy Tang
★
3.6k
0
votes
1
reply
111
views
updated 13 hours ago by
zorbax
▴
600
•
written 22 hours ago by
marie.harmel
•
0
0
votes
1
reply
110
views
1
vote
1
reply
110
views
updated 18 hours ago by
rpolicastro
12k
•
written 20 hours ago by
luckyday1661
•
0
0
votes
1
reply
109
views
updated 8 hours ago by
CTLong
▴
30
•
written 13 hours ago by
luckyday1661
•
0
0
votes
0
replies
108
views
0
votes
0
replies
107
views
1 day ago by
mia.nahom
▴
10
0
votes
0
replies
104
views
2 days ago by
junhuili
•
0
0
votes
1
reply
103
views
0
votes
1
reply
103
views
4 days ago by
Umer
▴
50
0
votes
0
replies
102
views
1
vote
0
replies
101
views
0
votes
0
replies
99
views
0
votes
0
replies
99
views
0
votes
0
replies
99
views
0
votes
0
replies
98
views
0
votes
0
replies
98
views
0
votes
2
replies
93
views
updated 2 hours ago by
GenoMax
136k
•
written 5 hours ago by
Shicheng Guo
★
9.3k
0
votes
0
replies
94
views
0
votes
0
replies
90
views
0
votes
0
replies
89
views
3 days ago by
Assa Yeroslaviz
★
1.8k
Recent Votes
Recent Locations •
All
India, 2 minutes ago
Russia, 5 minutes ago
United Kingdom, 5 minutes ago
Germany, 5 minutes ago
Europe, 8 minutes ago
Finland, 10 minutes ago
Europe, 16 minutes ago
Recent Awards •
All
Rising Star to
analyst
▴
10
Teacher to
Pierre Lindenbaum
158k
Popular Question to
MatthewP
★
1.3k
Popular Question to
Shicheng Guo
★
9.3k
Popular Question to
X
•
0
Recent Replies
Comment: Normalization of RNA captureSeq data (<20 genes captured)
by
ATpoint
78k
What is the question exactly? With only 20 genes you basically **must** use the spike-ins as that few genes do not really allow to normaliz…
Comment: Building reference dbSNP file using WGS samples
by
analyst
▴
10
Dear [Brian][1] I realized that problem is with callvariants.sh script because when I called variants using freebayes I did not find aforem…
Comment: gatk SelectVariants is giving dupilicate allele error while extracting SNPs out
by
analyst
▴
10
Its bbmap tool callvariants.sh. I think you are right because I did not get such error when I called variants through freebayes.
Answer: Efficient way of calculating the number of mismatches between two sets of sequen
by
j.gleixner
•
0
Since all your sequences have the same length (say M) and you are only looking concerned with hamming distance you can encode your sequence…
Comment: Where to download excel file to include major human disease, prevalence and inci
by
GenoMax
136k
ChatGPT says
Disease Prevalence Approximate Number of Cases (Worldwide)
Cardiovascular Diseases High Over 17 million deaths annual…
Comment: Where to download excel file to include major human disease, prevalence and inci
by
Pierre Lindenbaum
158k
using wikidata: https://query.wikidata.org/sparql?query=%0ASELECT%20%3Fitem%20%3FitemLabel%20%3FitemDescription%20%3Fprevalence%20%3Fdoid%0…
Comment: Opinion on miRNA pipeline
by
ju_ra
•
0
Thank you very much! I see you decided to go for Bowtie as aligner. Do you see any issue in using STAR (as a splice aware reader technicall…
Answer: How to avoid missannotated GO terms?
by
Elisabeth Gasteiger
★
2.3k
Please contact the UniProt helpdesk whenever you find such annotations, especially in these cases where the GO evidence/source tag says "Un…
Comment: gatk SelectVariants is giving dupilicate allele error while extracting SNPs out
by
Pierre Lindenbaum
158k
again, it's a problem with the variant caller, which is ?
Comment: gatk SelectVariants is giving dupilicate allele error while extracting SNPs out
by
analyst
▴
10
Not only opposite case but same case nucleotides are also present in vcf fle.
![enter image description here][1]
[1]: /media/images/4…
Comment: gatk SelectVariants is giving dupilicate allele error while extracting SNPs out
by
analyst
▴
10
Yes [Pierre][1] there is lower case **g** in **REF** and upper case **G** in **ALT** field. My question is that why variant caller is calli…
Answer: gatk SelectVariants is giving error while extracting SNPs out of vcf file
by
Pierre Lindenbaum
158k
This is an error in your input vcf file. The REF allele MUST be différent from the ALT allele.
Comment: gatk SelectVariants is giving error while extracting SNPs out of vcf file
by
analyst
▴
10
I observed that my reference genomic fasta file contains both lower case and upper case nucleotides.
Do I need to convert lower case nucle…
Comment: Building reference dbSNP file using WGS samples
by
analyst
▴
10
I observed that both lower and upper cases are present in reference fasta file. Is bbtool case sensitive that while calling variants it con…
Comment: Read count vs Depth
by
Mary
•
0
Thanks Brain Bushnell
Referring to my query1: So u mean that for a particular gene, if total read count is 6, then depth may be just 1 or …
Traffic: 1940 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6