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1,000 results • Page
4 of 20
Sort: Votes
Rank
Views
Votes
Replies
93
votes
32
replies
30k
views
26 follow
Linux Distros Best Suited For Bioinformatics?
linux
written 11.2 years ago by
Sat3Lite
▴ 150
92
votes
105
replies
34k
views
25 follow
Tutorial:
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000genomes
PLINK
PCA
updated 18 days ago by
Ram
38k • written 4.6 years ago by
Kevin Blighe
85k
92
votes
5
replies
50k
views
Difference between Hard Clip and Soft Clip in Samtools CIGAR string
samtools
clipped-reads
soft-clip
bam
hard-clip
updated 15 months ago by
Ram
38k • written 8.6 years ago by
QVINTVS_FABIVS_MAXIMVS
★ 2.5k
92
votes
46
replies
10.0k
views
28 follow
Best Language For Introductory Programming Course From Within An Introduction Course On Bioinformatics.
programming
subjective
updated 6 weeks ago by
Ram
38k • written 11.7 years ago by
Andra Waagmeester
3.2k
92
votes
6
replies
33k
views
In Sam Format, Clarify The Meaning Of The "0" Flag.
sam
updated 12.0 years ago by
Jts
★ 1.4k • written 12.0 years ago by
tflutre
▴ 570
92
votes
20
replies
27k
views
13 follow
Is There Any R Or R / Bioconductor Package That Can Make Circular Plots Like Perl / Circos
r
visualization
updated 10 months ago by
Ram
38k • written 11.1 years ago by
John
★ 1.5k
91
votes
10
replies
105k
views
11 follow
Best Way To Do Pathway Analysis Of A Set Of Genes?
protein
genes
pathway
analysis
function
updated 11.0 years ago by
Guangchuang Yu
★ 2.6k • written 11.0 years ago by
Wayne
★ 1.0k
91
votes
25
replies
57k
views
18 follow
Best Practices/Softwares To Calculate Ka/Ks Ratio
kaks
selection
software
updated 6 months ago by
Michael D
52k • written 12.1 years ago by
Jarretinha
3.4k
91
votes
20
replies
18k
views
15 follow
Forum:
Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
N-of-one
WGS
RNA-Seq
next-gen
Exome
updated 5 months ago by
Ram
38k • written 8.9 years ago by
Obi Griffith
20k
90
votes
26
replies
37k
views
22 follow
Extracting Sequence From A 3Gb Fasta File
sequence
retrieval
fasta
perl
updated 5.2 years ago by
andplaia
• 0 • written 12.9 years ago by
Divya
▴ 260
90
votes
44
replies
57k
views
28 follow
Tool to generate proportional Venn Diagrams?
visualization
updated 11 months ago by
Ram
38k • written 12.0 years ago by
Ryan D
★ 3.4k
90
votes
38
replies
129k
views
18 follow
Extract Reads From A Bam File That Fall Within A Given Region
bam
updated 6 months ago by
Wang Cong
▴ 10 • written 10.7 years ago by
abi
▴ 370
89
votes
19
replies
30k
views
12 follow
Tutorial:
Machine Learning For Cancer Classification - Part 1 - Preparing The Data Sets
microarray
bioconductor
expression
classification
updated 4 weeks ago by
Ram
38k • written 9.4 years ago by
Obi Griffith
20k
89
votes
21
replies
48k
views
13 follow
Should We Remove Duplicated Reads In Rna-Seq ?
rna-seq
read
updated 9.3 years ago by
earonesty
▴ 240 • written 10.4 years ago by
siddharth.sethi5
▴ 270
89
votes
31
replies
12k
views
23 follow
Best Graphics Gallery Or Blogs For Bioinformatics Use
graphs
visualization
genomics
updated 8 months ago by
Ram
38k • written 11.1 years ago by
John
★ 1.5k
88
votes
32
replies
8.2k
views
11 follow
Forum:
Vintage / unconventional pictures for Bioinformatics
history
picture
updated 12 months ago by
Ram
38k • written 8.4 years ago by
Pierre Lindenbaum
153k
88
votes
52
replies
45k
views
16 follow
PCA plot from read count matrix from RNA-Seq
RNA-Seq
pca
updated 16 months ago by
BioNovice247
▴ 10 • written 5.4 years ago by
rachel.kubik12
▴ 210
88
votes
18
replies
58k
views
12 follow
Sequence length from Fasta
fasta
updated 3 months ago by
Ram
38k • written 8.4 years ago by
bongbang
▴ 80
88
votes
24
replies
4.7k
views
10 follow
Forum:
How To Be Helpful As A Biostar Moderator/Editor?
biostars
updated 6 weeks ago by
Ram
38k • written 10.1 years ago by
aidan-budd
1.9k
88
votes
36
replies
36k
views
15 follow
1000 Genomes Ld Calculation
genome
linkage
gwas
updated 9.1 years ago by
Leandro Lima
▴ 960 • written 12.5 years ago by
Ryan D
★ 3.4k
88
votes
24
replies
8.5k
views
14 follow
Project Euler Equivalent For Bioinformatics?
online
updated 6.2 years ago by
Biostar
20 • written 12.7 years ago by
Gabriel Mitchell
▴ 520
87
votes
25
replies
49k
views
21 follow
How To Split A Multiple Fasta
fasta
split
updated 14 months ago by
Ram
38k • written 12.6 years ago by
Gvj
▴ 460
87
votes
13
replies
19k
views
9 follow
What Do Different Bioinformatics Positions Mean?
career
general
updated 7 weeks ago by
Ram
38k • written 13.0 years ago by
Yuri
★ 1.6k
87
votes
37
replies
48k
views
20 follow
Venn/Euler Diagram Of Four Or More Sets
r
updated 12 months ago by
Ram
38k • written 9.7 years ago by
Hunter
▴ 110
87
votes
16
replies
20k
views
15 follow
Are we tricking ourselves with batch effect correction?
combat
batch-effect
sva
updated 8 weeks ago by
madbadradscientist
▴ 20 • written 7.8 years ago by
Christian
★ 3.0k
86
votes
11
replies
18k
views
8 follow
Good Gwas Papers / Resources
gwas
literature
snp
updated 12.7 years ago by
Larry_Parnell
16k • written 12.7 years ago by
brentp
24k
86
votes
29
replies
8.6k
views
9 follow
Forum:
What is the future of EMBL-EBI (and European bioinformatics in general) in case of a 'Brexit'?
EBI
EU
politics
Forum
brexit
6.8 years ago by
Michael D
52k
85
votes
19
replies
39k
views
17 follow
How To Assess The Quality Of An Assembly? (Is There No Magic Formula?)
assembly
quality
next-gen
updated 13 months ago by
WANG
▴ 10 • written 10.2 years ago by
diltsjeri
▴ 470
85
votes
52
replies
8.3k
views
31 follow
Which Application Is Truly Missing In Bioinformatics?
subjective
general
updated 2.3 years ago by
jerry
▴ 130 • written 13.0 years ago by
Jarretinha
3.4k
84
votes
36
replies
17k
views
13 follow
Forum:
Benchmark - Comparison of Different NGS Mappers
mRNA-Seq
benchmark
NGS-mapper
updated 12 months ago by
Ram
38k • written 8.3 years ago by
David Langenberger
9.9k
84
votes
16
replies
84k
views
9 follow
Number of mapped reads from BAM file
bam
sam
reads
mapping
updated 4 months ago by
bhanu.chandra1
▴ 50 • written 8.0 years ago by
Prakki Rama
★ 2.6k
84
votes
12
replies
50k
views
9 follow
What are chimeric reads?
sequence
updated 14 months ago by
Ram
38k • written 8.4 years ago by
zhangz.cs
▴ 290
84
votes
22
replies
3.5k
views
12 follow
Forum:
is fortran still used in bioinformatics?
FORTRAN
R
updated 22 days ago by
Ram
38k • written 3.8 years ago by
Manoj
▴ 180
83
votes
34
replies
15k
views
21 follow
Tutorial:
Enrichment Analysis, Clustering and Scoring with pathfindR
active-subnetwork
enrichment
pathway
R
updated 22 days ago by
Ram
38k • written 4.8 years ago by
egeulgen
★ 1.3k
83
votes
30
replies
5.5k
views
18 follow
Forum:
Optimal design for bioinformatics "lab" space?
design
lab-space
updated 9 months ago by
Ram
38k • written 8.0 years ago by
Casey Bergman
18k
82
votes
21
replies
15k
views
16 follow
Tutorial:
Gene Set Enrichment Analysis
microarray
enrichment
RNA-Seq
GSEA
updated 22 days ago by
Ram
38k • written 2.5 years ago by
Hamid Ghaedi
2.9k
82
votes
28
replies
28k
views
19 follow
Tutorial:
How to create a mutation landscape (waterfall) plot with GenVisR
BioConductor
GenVisR
Graphics
R
updated 7 weeks ago by
Ram
38k • written 7.1 years ago by
Obi Griffith
20k
82
votes
19
replies
12k
views
8 follow
Future Directions In Bioinformatics
subjective
career
updated 6 weeks ago by
Ram
38k • written 12.4 years ago by
Hranjeev
★ 1.5k
82
votes
19
replies
17k
views
16 follow
How Do Pathway Databases Compare?
pathway
database
subjective
updated 21 months ago by
some1
• 0 • written 12.4 years ago by
Shigeta
▴ 460
82
votes
11
replies
28k
views
10 follow
Qiime Vs Mothur : Why Use One Over The Other?
metagenomics
updated 6.5 years ago by
shizhaojingszj
• 0 • written 9.1 years ago by
amcrisan
▴ 370
82
votes
21
replies
71k
views
13 follow
Tutorial:
How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
bcftools
samtools
htslib
updated 6 weeks ago by
cmdcolin
★ 2.9k • written 4.7 years ago by
otwtgin2010
▴ 540
82
votes
32
replies
6.5k
views
13 follow
Forum:
Shall We Go Back To Stackexchange?
meta
updated 5 weeks ago by
Ram
38k • written 10.4 years ago by
14134125465346445
★ 3.6k
82
votes
13
replies
39k
views
7 follow
Ti/Tv Ratio Confirms Snp Discovery. Is This A General Rule?
snp
snp
updated 2.6 years ago by
Biostar
20 • written 12.2 years ago by
Yahan
▴ 210
81
votes
8
replies
7.8k
views
6 follow
Tutorial:
Current Topics in Genome Analysis 2014 (collection of educational lectures)
workshop
lectures
genomics
training
updated 25 days ago by
Ram
38k • written 8.8 years ago by
Malachi Griffith
19k
81
votes
39
replies
6.0k
views
11 follow
News:
State Of Biostar - Future Directions (January 2013)
biostars
updated 6 weeks ago by
Ram
38k • written 10.2 years ago by
Istvan Albert
97k
81
votes
23
replies
11k
views
10 follow
Transform A Pipeline Of R Scripts Into A Web Application
webservice
web
pipeline
galaxy
updated 11 months ago by
Ram
38k • written 12.7 years ago by
Giovanni M Dall'Olio
27k
81
votes
26
replies
11k
views
17 follow
Appropriate Podcasts For A Bioinformatician?
subjective
updated 3.5 years ago by
skbrimer
▴ 710 • written 13.1 years ago by
User 59
13k
81
votes
21
replies
4.1k
views
16 follow
Forum:
[UPDATE] Thrown into a Bioinformatics Position
bioinformatics
updated 14 days ago by
Ram
38k • written 6.8 years ago by
Sinji
★ 3.2k
81
votes
15
replies
22k
views
10 follow
Vertebrate Subset Nr Database? Build My Own?
blast
database
updated 8.8 years ago by
jcsoellner
• 0 • written 12.0 years ago by
Jason
▴ 430
80
votes
34
replies
3.9k
views
11 follow
Forum:
Authorship issues- how to resolve?
authorship
updated 12 weeks ago by
Ram
38k • written 7.8 years ago by
datanerd
▴ 520
1,000 results • Page
4 of 20
Recent Votes
Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
SSPACE for scaffolding
Answer: Snakemake workflow for trimmomatic
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
A: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p
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Popular Question
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GenoMax
127k
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★ 23k
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Recent Replies
Comment: SKAT in R
by
Eliza
▴ 20
@acvill can you sujjest maybe pther tools , methods for this ? ( also for every SNP i have data how many patients had the hetro/homozygous…
Comment: TCGA-BRCA tissue and RNAseq problem
by
pinheirofabiano
▴ 10
Go to https://portal.gdc.cancer.gov > Exploration > select TCGA and the cancer type you want > select case ID to download the files and hav…
Answer: Snakemake workflow for trimmomatic
by
antoine.fauchois92
• 0
Thank you very much for your reply ! It's working now !
Comment: Dependent p values
by
Eliza
▴ 20
@lchart I'm sorry for asking another of questions but I'm new to this field , can you please explain a little more how to use SKAT , saige…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
dare_devil
★ 1.7k
similar question [here][1], [here][2] and [here][3] [1]: https://support.bioconductor.org/p/54838/ [2]: https://support.bioconductor.…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
dare_devil
★ 1.7k
@genomax I have used the same platform file only. If you look at probe id and their corresponding `Gene Symbol` or `ENTREZ_GENE_ID` you can…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
GenoMax
127k
Where are you seeing this? [Platform file for this array][1] on GEO has these names uniquely assigned. [1]: https://www.ncbi.nlm.nih.go…
Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL
by
rpolicastro
11k
`Org.Mm.eg.db` is the mouse organism database, but your ENSEMBL IDs are for human genes. Mouse ensembl ids start with `ENSMUSG`. You proba…
Comment: Snakemake doesn't recognize output files even though they are created
by
DdogBoss
• 0
Yes, it completed the dry run. What other information do you need?
Comment: LDSC correlation calculate confidence intervals
by
YL
▴ 10
Based on my personal thought, I think the se from LDSC output probably needs to be transferred using Delta method based on Fisher transform…
Comment: LDSC correlation calculate confidence intervals
by
YL
▴ 10
Hi, Are you able to find an answer for this? I have the exact question! YL
Answer: Gene duplicate
by
ATpoint
71k
Use use ensembID_geneName as gene identifier to avoid that. These duplicate names exist as genes so removing them is somewhat not really da…
Comment: Gene duplicate
by
Ram
38k
> some Ensembl IDs that are the same Please show us some examples.
Comment: R package for functional enrichment and depletion analysis
by
rpolicastro
11k
What you're describing is a simulation of the hypergeometric test, so if you want an exact solution you could use the function `fora` from …
Comment: How to remove duplicate reads after ONT basecalling from fastq.gz files
by
Darrenjdd
• 0
Perfect! Thank you!
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