Limit : all time
all time today this week this month this year
1,000 results • Page 5 of 20
Sort: Votes
Rank Views Votes Replies
81
votes
27
replies
20k
views
12 follow
ATAC-seq sample normalization
ChIP-Seq atac-seq normalization
updated 20 days ago by • 0 • written 4.3 years ago by ▴ 240
81
votes
6
replies
45k
views
6 follow
Read Group In Sam/Bam Files: What Do They Exactly Describe?
bam samtools next-gen
updated 2.1 years ago by 43k • written 12.0 years ago by 4.4k
81
votes
26
replies
13k
views
17 follow
Appropriate Podcasts For A Bioinformatician?
subjective
updated 6 months ago by 43k • written 14.1 years ago by 13k
81
votes
23
replies
12k
views
10 follow
Transform A Pipeline Of R Scripts Into A Web Application
webservice web pipeline galaxy
updated 24 months ago by 43k • written 13.7 years ago by 28k
81
votes
21
replies
42k
views
15 follow
How To Get Bed File Containing Exons Of Canonical Transcripts And Their Corresponding Gene Symbols
bed transcript ucsc biomart
updated 7 months ago by ▴ 210 • written 10.2 years ago by ▴ 750
81
votes
4
replies
21k
views
Discrimination Between Germline And Somatic Mutations In Tumor Without The Availability Of The Normal Paired Sample
mutation somatic
updated 11.2 years ago by 4.4k • written 11.2 years ago by 4.3k
81
votes
39
replies
7.5k
views
11 follow
News: State Of Biostar - Future Directions (January 2013)
biostars
updated 14 months ago by 43k • written 11.3 years ago by 100k
81
votes
15
replies
24k
views
10 follow
Vertebrate Subset Nr Database? Build My Own?
blast database
updated 9.8 years ago by • 0 • written 13.1 years ago by ▴ 430
80
votes
21
replies
36k
views
17 follow
How to know that your RNA-seq is stranded or not?
RNA-Seq
updated 5 months ago by • 0 • written 10.0 years ago by ▴ 660
80
votes
27
replies
56k
views
20 follow
How To Write Data In A Granges Object To A Bed File.
bed
updated 20 months ago by ▴ 70 • written 10.3 years ago by ▴ 190
80
votes
23
replies
5.3k
views
11 follow
Forum: Are we facing a bioinformatician shortage?
salary career
updated 13 months ago by 43k • written 9.5 years ago by ★ 3.0k
80
votes
24
replies
11k
views
18 follow
Which Bioinformatics Journals Do You Follow?
bioinformatics-journal
updated 5 months ago by 43k • written 14.0 years ago by 28k
80
votes
34
replies
5.2k
views
11 follow
Forum: Authorship issues- how to resolve?
authorship
updated 15 months ago by 43k • written 8.9 years ago by ▴ 520
80
votes
22
replies
91k
views
16 follow
How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Sequences In A Single File
next-gen sequencing fasta rna r perl
updated 17 months ago by 43k • written 12.5 years ago by ▴ 290
79
votes
16
replies
48k
views
11 follow
How do you cite a tool that doesn't have a publication?
citation academic style
updated 8.0 years ago by 23k • written 8.1 years ago by ★ 1.1k
79
votes
35
replies
9.6k
views
17 follow
Forum: Do bioinformaticians often break molecular biologists' hearts by being the first author?
authorship career
updated 11 months ago by • 0 • written 8.4 years ago by ▴ 650
79
votes
86
replies
31k
views
20 follow
Tool: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates.
clumpify storage bbmap pigz compression
updated 10 months ago by 43k • written 7.4 years ago by 20k
78
votes
38
replies
33k
views
15 follow
Illumina Instrument Type from fastq?
fastq
updated 7 weeks ago by ▴ 60 • written 7.8 years ago by 6.5k
78
votes
31
replies
6.8k
views
14 follow
Forum: Do Bad Questions Even Exist?
biostars general education
updated 14 months ago by 43k • written 13.2 years ago by 10k
77
votes
9
replies
13k
views
15 follow
Which program, tool, or strategy do you use to visualize genomic rearrangements?
fusion-genes visualizations rearrangements
updated 19 months ago by 43k • written 8.6 years ago by ★ 1.1k
77
votes
13
replies
15k
views
12 follow
Tutorial: Exploring cancer mutation data portals
TCGA Cancer ICGC Data-Portal Mutation
updated 2.5 years ago by 43k • written 9.9 years ago by 19k
77
votes
24
replies
61k
views
16 follow
How To Sort Bed Format File
bed
updated 18 months ago by 161k • written 11.2 years ago by ▴ 450
77
votes
22
replies
23k
views
14 follow
Assessing The Quality Of De Novo Assembled Data
assembly next-gen
updated 19 months ago by 43k • written 11.9 years ago by ★ 2.7k
77
votes
20
replies
14k
views
12 follow
Perl Or Python For Comparative Genomics?
bioperl biopython python comparative
updated 5.9 years ago by 5.8k • written 13.6 years ago by ★ 2.0k
77
votes
18
replies
46k
views
13 follow
Bioinformaticist Vs. Bioinformatician
subjective
updated 21 months ago by • 0 • written 13.9 years ago by ★ 1.1k
77
votes
12
replies
39k
views
8 follow
How Can I Get The Human Chromosome Centromere Position And Chromosome Length In Grch37/Hg19
position ucsc
updated 5.5 years ago by ▴ 100 • written 13.6 years ago by ▴ 260
77
votes
15
replies
10k
views
10 follow
Best Bioinformatics Research Images
visualization
updated 12.8 years ago by 7.4k • written 12.9 years ago by 2.3k
77
votes
11
replies
33k
views
9 follow
Star Or Tophat?
rnaseq alignment tophat
updated 3.0 years ago by 43k • written 10.3 years ago by ▴ 970
77
votes
10
replies
21k
views
6 follow
what do the headers of the rMATS output files mean?
MATS Alternative splicing next-gen STAR
updated 5.5 years ago by • 0 • written 6.9 years ago by ▴ 140
77
votes
16
replies
34k
views
14 follow
Automatically Getting The Ncbi Taxonomy Id From The Genbank Identifier
genbank conversion ncbi taxonomy
updated 7.2 years ago by ★ 1.1k • written 12.7 years ago by ▴ 490
76
votes
71
replies
19k
views
19 follow
Tutorial: Clustering of DAVID gene enrichment results from gene expression studies
enrichment david
updated 1 day ago by 141k • written 6.2 years ago by 87k
76
votes
14
replies
12k
views
10 follow
Tool: karyoploteR: uncircle your genomes
karyoploteR Rdataviz NGS
updated 10 months ago by 43k • written 6.9 years ago by ★ 3.4k
76
votes
26
replies
120k
views
15 follow
How to count fastq reads
sequence next-gen fastq reads
updated 5 months ago by ★ 2.8k • written 9.0 years ago by ▴ 260
76
votes
14
replies
16k
views
15 follow
Tutorial: List Of Bioinformatics Books
books
updated 14 months ago by 43k • written 10.9 years ago by 9.7k
76
votes
24
replies
20k
views
18 follow
What Methods Do You Use For Short Read Mapping?
short-read-aligner sequence
updated 4.7 years ago by 43k • written 14.1 years ago by ★ 1.0k
76
votes
22
replies
54k
views
17 follow
How To Download All Sra Samples At Once ?
geo sra
updated 13 months ago by 43k • written 10.2 years ago by ★ 1.5k
75
votes
19
replies
3.4k
views
11 follow
Blog: A list of technical advantages of Snakemake over Nextflow | Cloud solution for Snakemake
Snakemake
updated 7 weeks ago by 4.2k • written 7 months ago by ▴ 30
75
votes
15
replies
36k
views
8 follow
About Paired-End Sequencing
next-gen-sequencing duplicates
updated 5 months ago by 43k • written 14.0 years ago by 161k
75
votes
13
replies
67k
views
10 follow
Tutorial: Machine Learning For Prediction of Relapse in Cancer - Part 2 - Building A Random Forest Classifier
r cancer classification
updated 17 months ago by 43k • written 10.4 years ago by ★ 1.2k
74
votes
14
replies
30k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 22 months ago by 43k • written 13.9 years ago by 4.5k
74
votes
16
replies
4.7k
views
10 follow
Tools & Techniques Bioinformatician Have To Master?
subjective
updated 9 months ago by 43k • written 13.1 years ago by ★ 3.3k
74
votes
3
replies
39k
views
Tutorial: Revisiting the FastQC read duplication report
fastqc
updated 2.4 years ago by 43k • written 9.8 years ago by 100k
73
votes
14
replies
4.2k
views
12 follow
Forum: Things you wish you knew when entering the bioinformatics field
pitfalls advice
updated 10 months ago by 43k • written 3.6 years ago by ★ 16k
73
votes
7
replies
13k
views
6 follow
What Should I Use Blat For?
alignment
updated 11.4 years ago by 11k • written 11.4 years ago by ★ 4.1k
73
votes
27
replies
28k
views
16 follow
Tutorial: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
RNA-seq
updated 4 months ago by • 0 • written 10.2 years ago by 100k
73
votes
60
replies
27k
views
16 follow
Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
1000genomes PLINK PCA VCF
updated 14 months ago by 43k • written 6.6 years ago by 87k
73
votes
25
replies
9.0k
views
16 follow
The Five Most Annoying Bioinformatics Problems You Face Every Week?
updated 10.6 years ago by 11k • written 10.6 years ago by ▴ 60
72
votes
18
replies
7.5k
views
17 follow
Forum: What Is One Book Every Bioinformatician Should Read?
books
updated 14 months ago by 43k • written 10.8 years ago by 8.3k
72
votes
20
replies
26k
views
11 follow
Parsing Ncbi Taxonomic Tree?
ncbi taxonomy python tree
updated 16 months ago by 43k • written 12.5 years ago by ▴ 350
72
votes
48
replies
18k
views
15 follow
Tutorial: For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Threshold?
ngs alignment bwa
updated 14 months ago by 43k • written 11.2 years ago by 33k
1,000 results • Page 5 of 20
Recent Votes
Answer: Fast way to extract specific sequences from large fasta
Answer: Fast way to extract specific sequences from large fasta
Comment: Intersect multiple BED files
Exciting 2024 Summer Internship Opportunity in Translational Genetics Arrowhead Pharmaceuticals!
Comment: Correlation for ATAC-Seq and Chip-Seq
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Recent Locations • All
France, 1 minute ago
Spain, 1 minute ago
Bologna, 2 minutes ago
Stony Brook University, NY, 2 minutes ago
Lyon, 3 minutes ago
Belgium, Brussels, 8 minutes ago
Malaysia, 8 minutes ago
Recent Awards • All
Popular Question to pfee418 ▴ 10
Popular Question to sarahmanderni ▴ 100
Popular Question to Michael 54k
Popular Question to michael.flower.14 ▴ 180
Popular Question to sarahawan92 ▴ 10
Teacher to Mensur Dlakic ★ 27k
Popular Question to MatthewP ★ 1.4k
Recent Replies
Answer: ISCN annotation for SV/CN VCF files by princessmaryanabdullahi • 0
**vvvvvv**Hi > `***Blockquote***` Iam maryan High school ---------- ##
Answer: ISCN annotation for SV/CN VCF files by princessmaryanabdullahi • 0
Hi Iam maryan High school
Answer: How to compare the quality of assemblies by colindaven 6.4k
Are you sure you have looked into the HiFiasm output files (fasta and GFA) in detail and excluded non-primary contigs, hap1, hap2 and other…
Answer: How to identify gaps in a genome? by colindaven 6.4k
You can use seqtk to find gaps in a fasta https://github.com/lh3/seqtk seqtk gap Usage: seqtk gap [-l 50] <in.fa>
Comment: some error in building kraken2 database by GenoMax 141k
> Obviously, running kraken2 after the build is complete does not produce the correct results What do you get instead? Error/no output? Ha…
Comment: Failed kmer content by GenoMax 141k
Can you post a screenshot of what you are referring to? Why did you choose to "clean" your data? FastQC analysis needs to be done keeping…
Comment: Help for coding: Trinity for differential gene expression studies by rhossen • 0
It should be great if I have any assistance in my build up command using trinity package...
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over by WouterDeCoster 47k
I want reads in a specific short interval, but if I do that with samtools view I also get reads that are spliced over that interval.
Answer: Help for coding: Trinity for differential gene expression studies by mchour • 0
Hello, I would recommend following RSEM wiki for more information about the options, or even run RSEM directly, not with the script provi…
Answer: WGCNA preservation analysis by Michael 54k
This seems like a model case for why we need better sustainable bioinformatics data and services. I don't know the exact background behind …
Comment: some error in building kraken2 database by Art1ess • 0
this is names.dmp:![names.dmp][1] and nodes.dmp![nodes.dmp][2] [1]: /media/images/33cc9a8b-4818-48b4-913d-1c2b2185 [2]: /media/i…
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over by Pierre Lindenbaum 161k
see also : https://www.biostars.org/p/9537698/ ; https://www.biostars.org/p/9464312/ ; https://www.biostars.org/p/417123/
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over by Pierre Lindenbaum 161k
what's the gray section ? it's the read you want ? do you only want the reads that end at the splice event (single point location) ?
Comment: interpretartion of a vcf file by Pierre Lindenbaum 161k
yes if there is more than one sample genotyped.
Comment: interpretartion of a vcf file by samuelkalandarov2002 ▴ 10
Is it typical to observe such a profile in the context of diploid organism ?
Traffic: 2674 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6