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1,000 results • Page
5 of 20
Sort: replies
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Votes
Replies
13
votes
9
replies
1.9k
views
News:
Inviting NEW Biostars moderators to join Biostars slack channel
slack
moderator
updated 15 days ago by
Ram
39k • written 5.0 years ago by
GenoMax
130k
8
votes
9
replies
3.1k
views
8 follow
Forum:
How can I contribute to the Bioinformatics community as a Software Engineer
software-engineer
updated 13 days ago by
Ram
39k • written 4.6 years ago by
Chen Sun
★ 1.1k
6
votes
8
replies
1.4k
views
activity of unloaded/unassembled Tn5
next-gen-sequencing
updated 20 days ago by
Ram
39k • written 5.3 years ago by
zhaohainancau
• 0
0
votes
8
replies
1.3k
views
could not find function "pickSoftThreshold"
R
updated 26 days ago by
Ram
39k • written 11 months ago by
Sonia
• 0
26
votes
8
replies
1.3k
views
7 follow
Forum:
Reasons to refuse to give support
design
rna-seq
statistics
updated 13 days ago by
Ram
39k • written 4.6 years ago by
Benn
8.3k
11
votes
8
replies
2.4k
views
Job:
Heng Li: "I am likely to start my lab in October(..) I am looking for a couple of postdocs in bioinformatics, genomics and related fields"
postdoc
updated 14 days ago by
Ram
39k • written 4.9 years ago by
Pierre Lindenbaum
154k
2
votes
8
replies
1.5k
views
Forum:
Wanted: Analysis of RNA-seq data with Bioconductor short course/training (~3 months)
rna-seq
updated 26 days ago by
Ram
39k • written 6.1 years ago by
bioinfo17
▴ 30
6
votes
8
replies
634
views
Help with running ATAC using Encode pipeline
encode
ATAC-seq
13 hours ago by
Chris
▴ 100
0
votes
8
replies
916
views
Error faced in executables storing during Blat installation
BLAT
updated 26 days ago by
Ram
39k • written 9 months ago by
sabreenaalam12345
• 0
7
votes
8
replies
1.5k
views
News:
A new Stack Exchange site for Research Computing
unix
linux
updated 20 days ago by
Ram
39k • written 5.5 years ago by
tiagoantao
▴ 690
12
votes
8
replies
2.6k
views
7 follow
Bioinformatician salary - Current market
career
updated 23 days ago by
Ram
39k • written 5.9 years ago by
prabha
▴ 10
16
votes
8
replies
289
views
Tool:
ChatGPT optimized for bioinformatics questions
gpt
3 hours ago by
Sasha
▴ 280
6
votes
8
replies
1.7k
views
Is validation necessary?
pipeline
publications
validation
updated 20 days ago by
Ram
39k • written 5.6 years ago by
BioinfGuru
★ 1.6k
6
votes
8
replies
4.6k
views
how to store index files generated by bwa in different folder than the reference sequence ?
bwa
reference-sequence
updated 27 days ago by
Ram
39k • written 6.2 years ago by
retrogenomics
▴ 30
1
vote
8
replies
1.8k
views
Forum:
Memory-driven computing accelerates genomic data processing
HPC
updated 12 days ago by
Ram
39k • written 4.4 years ago by
5heikki
11k
6
votes
8
replies
3.1k
views
Forum:
A hot topic in Bioinformatics 2017
paper
updated 27 days ago by
Ram
39k • written 6.2 years ago by
XBria
▴ 90
1
vote
8
replies
864
views
Betacoronavirus.00.nsq error
corona
biostars
updated 23 days ago by
Ram
39k • written 16 months ago by
Sam
• 0
10
votes
8
replies
8.3k
views
7 follow
Building Dict File for GATK
java
gatk
updated 6 days ago by
dare_devil
★ 3.1k • written 3.4 years ago by
dec986
▴ 360
2
votes
8
replies
2.6k
views
How to convert a database from protein to nucleotide
blastn
unix
blastx
blast
updated 27 days ago by
Ram
39k • written 6.2 years ago by
AJTrunkskun94
• 0
34
votes
8
replies
2.2k
views
9 follow
Forum:
Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a master of none? How can your CV reflect the diverse skills that you have …
cv
industry
career
updated 2 days ago by
Ram
39k • written 3.6 years ago by
'
▴ 300
10
votes
8
replies
1.3k
views
PHRED scores and sequence errors
sequencing-errors
probability
PHRED
updated 25 days ago by
Ram
39k • written 23 months ago by
Dunois
★ 2.3k
7
votes
8
replies
961
views
Forum:
Guidelines / Limits for Shared Bioinformatics Support
Core
Shared-Resources
Collaboration
updated 1 day ago by
Ram
39k • written 3.5 years ago by
Charles Warden
8.2k
3
votes
8
replies
851
views
need code for sorting fasta header
fasta
sequence
updated 13 days ago by
Ram
39k • written 4.6 years ago by
divyaranib.10
• 0
11
votes
8
replies
1.3k
views
Forum:
Bioinformatics cores pricing model
pricing-models
core
Bioinformatics-services
updated 8 days ago by
Ram
39k • written 4.2 years ago by
Bioinfo_2006
▴ 160
11
votes
8
replies
1.5k
views
Tools for CRISPR/CAS9
CRISPR-CAS9
updated 19 days ago by
Ram
39k • written 20 months ago by
Jimpix
▴ 10
1
vote
8
replies
1.6k
views
Replacing nth character in all lines help
sequence
linux
unix
python
updated 16 days ago by
Ram
39k • written 5.2 years ago by
austinjyoder
• 0
0
votes
8
replies
1.5k
views
Chromosome Location of Sequence in Fasta File using Biopython
biopython
python
updated 1 day ago by
Ram
39k • written 3.5 years ago by
muhammad.khizerkiet
• 0
2
votes
8
replies
1.2k
views
Forum:
Learning community for newbies
python
updated 16 days ago by
Ram
39k • written 5.2 years ago by
denzwei
• 0
4
votes
8
replies
245
views
Extract sequences from a fastq file by a list of IDs
fastq
updated 2 hours ago by
Ram
39k • written 12 hours ago by
mhpakdel96
▴ 10
3
votes
8
replies
1.7k
views
Algorithms for finding nearest range given two lists of ranges?
algorithms
updated 15 days ago by
Ram
39k • written 5.1 years ago by
endrebak
▴ 930
0
votes
8
replies
5.9k
views
Bedtools problem : It looks as though you have less than 3 columns at line: 1. Are you sure your files are tab-delimited
bedtools
fasta
updated 1 day ago by
Michael
• 0 • written 3.6 years ago by
Tomm
• 0
9
votes
8
replies
4.4k
views
Forum:
R or python, which one do you prefer in analysing scRNAseq datasets?
R
RNA-Seq
python
updated 15 days ago by
Ram
39k • written 5.1 years ago by
wt215
• 0
11
votes
8
replies
8.3k
views
9 follow
Genome assembly statistical tools
statistics
tools
Assembly
updated 5 days ago by
Bryan
• 0 • written 3.8 years ago by
margab
▴ 10
4
votes
8
replies
1.6k
views
How to extract promoter sequences from a plant draft genome?
promoter
genome
updated 4 days ago by
Ram
39k • written 3.7 years ago by
Kumar
▴ 100
9
votes
8
replies
2.6k
views
How to extract a sequence from a multi-fasta file based on its position?
fasta
perl
python
shell-script
updated 7 days ago by
Ram
39k • written 4.0 years ago by
Kumar
▴ 100
2
votes
8
replies
1.2k
views
How to append two fasta files?
unix
fasta
python
updated 7 days ago by
Ram
39k • written 4.0 years ago by
Kumar
▴ 100
1
vote
8
replies
412
views
how to create correlation matrix R
pearson-correlation
R
6 days ago by
satva72
• 0
8
votes
8
replies
5.0k
views
How To Control Wgsim Base Qualities?
fastq
gatk
updated 29 days ago by
André
• 0 • written 11.5 years ago by
Pascal
★ 1.5k
6
votes
8
replies
3.4k
views
6 follow
Forum:
Workstation : More RAM or Faster RAM
RAM
Configuration
workstation
updated 13 days ago by
Ram
39k • written 4.7 years ago by
venuraherath
▴ 20
4
votes
8
replies
3.7k
views
Limma time-course: how to apply differential contrast if time zero is considered both as treatment and control?
time-course
limma
updated 8 days ago by
Ram
39k • written 5.5 years ago by
harelarik
▴ 90
1
vote
8
replies
1.1k
views
Why does phylogenetic tree topology changes, among nucleotide and amino acid sequences basis?
phylogeny
alignment
updated 7 days ago by
Ram
39k • written 4.0 years ago by
Kumar
▴ 100
10
votes
8
replies
13k
views
6 follow
Error: Eof Marker Is Absent When Processing A Bam File
samtools
updated 26 days ago by
Ram
39k • written 10.8 years ago by
Mary
▴ 50
6
votes
8
replies
3.6k
views
7 follow
Which method is the best for using in "dba.count" in Diffbind R package
ChIP-Seq
diffbind
updated 6 hours ago by
Rory Stark
★ 1.8k • written 3.7 years ago by
m.sadman.sakib
▴ 120
4
votes
8
replies
562
views
Error while running nf-core/rnaseq pipeline
nf-core
RNA-seq
15 days ago by
eesha28112001
• 0
1
vote
8
replies
1.5k
views
Forum:
Statistics graduate wants to do some bioinformatics analysis
next-gen
R
statistics
updated 21 days ago by
Ram
39k • written 5.6 years ago by
shanjida986
• 0
5
votes
8
replies
1.7k
views
7 follow
Forum:
Ranking of Bioinformatics tools & resources by the number of users
bioinformatics-tools
updated 14 days ago by
Ram
39k • written 4.8 years ago by
BioICoder
▴ 40
8
votes
8
replies
2.3k
views
News:
Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook
education
updated 53 minutes ago by
Ram
39k • written 3.3 years ago by
Istvan Albert
98k
1
vote
8
replies
550
views
snpeff install error
snpeff
updated 26 days ago by
Ram
39k • written 5 weeks ago by
bestone
▴ 10
3
votes
8
replies
447
views
Obtaining the AF and DP values for variants in a VCF
DP
mutect2
SNP
vcf
AF
updated 13 days ago by
Ram
39k • written 14 days ago by
bt_cepo
▴ 20
17
votes
8
replies
5.1k
views
Applying Patches To Grch Assembly
assembly
human
freeze
genome
updated 5 days ago by
Jeremy Leipzig
21k • written 11.0 years ago by
Nikolay Vyahhi
★ 1.3k
1,000 results • Page
5 of 20
Recent Votes
Answer: Saving results from yeastgenome.org blastp search
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data.
Answer: Saving results from yeastgenome.org blastp search
Comment: snps from empty well, Illumina Sequencing
Extract sequences from a fastq file by a list of IDs
Answer: Extract sequences from a fastq file by a list of IDs
Answer: Differences in GTF files hg19 and hg38
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▴ 140
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nux
▴ 20
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★ 1.8k
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Recent Replies
Comment: VCF file CSQ flag
by
Payal
▴ 140
Its a gvcf file #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT S101 S102 S103 S104 S105
Comment: CellRanger problem
by
GenoMax
130k
And how much memory do you have assigned for this job? Likely you do not have enough memory for this process.
Comment: VCF file CSQ flag
by
Ram
39k
> a g.VCF file A `.vcf` file or a `gvcf` file?
Comment: CellRanger problem
by
Ram
39k
What is the cellranger command you're using?
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data.
by
Yeeshouw
• 0
I see, I believe I was running an older version or have missed the option, I have updated to v2.10.5 and can see this option now. Thank you…
Answer: Saving results from yeastgenome.org blastp search
by
GenoMax
130k
Looks like yeastgenome site does not provide a way to export or save the results in any other format. You could do the search over at NCBI …
Answer: Differences in GTF files hg19 and hg38
by
GenoMax
130k
Not sure where you got your GTF for GRCh38 from but [**one from GENCODE**][1] has the level info you are looking for. chr1 HAVANA…
Comment: CHiP-Seq Questions
by
B.N.
• 0
Thank you for the suggestions Dr. Stark.
Comment: Diff Bind Questions
by
B.N.
• 0
Thank you so much for the insight Dr. Stark!
Comment: Is PanCan data microarray or rna-seq
by
GenoMax
130k
This particular example ("GeneChip") is an array. Early TCGA samples may have been done using arrays and later sequenced. Appears to be thi…
Comment: ChatGPT optimized for bioinformatics questions
by
Sasha
▴ 280
Hoping to add functionality around this. Stay tuned. Big problem for our space that needs to be resolved.
Comment: Is PanCan data microarray or rna-seq
by
solarchan7
• 0
Hi, so this [paper](https://www.nature.com/articles/s41598-019-45165-4) uses the TCGA dataset and in the supplementary information, it ment…
Comment: counts matrix should be numeric, currently it has mode: character when using a c
by
Darked89
4.4k
Since the input file is named `normalized.csv` and the values look like floats most likely the counts have been already normalized somehow.
Comment: Embryo transcriptome
by
Basti
★ 1.6k
https://www.ebi.ac.uk/ena/browser/view/PRJEB11202 https://www.ebi.ac.uk/ena/browser/view/PRJNA153427
Comment: ChatGPT optimized for bioinformatics questions
by
ATpoint
72k
How is it trained on PubMed/papers? One major drawback of ChatGPT is that it wildly makes up papers that do not even exist but with great c…
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