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1,000 results • Page
5 of 20
Sort: Votes
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Views
Votes
Replies
32
votes
13
replies
9.9k
views
11 follow
Any Recommendations For Statistical Genetics Texts?
genetics
statistics
gwas
updated 3 months ago by
Angelo
• 0 • written 13.7 years ago by
Shigeta
▴ 180
32
votes
4
replies
9.4k
views
Fastq Qualities For Solexa/Illumina
sequencing-quality
next-gen-sequencing
fastq
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Pierre Lindenbaum
161k
31
votes
14
replies
24k
views
7 follow
Difference between tSNE and PCA analysis
next-gen
rna-seq
updated 8 weeks ago by
Jeremy Leipzig
22k • written 6.2 years ago by
Qingyang Xiao
▴ 160
31
votes
22
replies
13k
views
6 follow
Tool:
SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
FASTQ
SeqKit
FASTA
updated 10 months ago by
Ram
43k • written 7.5 years ago by
shenwei356
8.4k
31
votes
11
replies
6.6k
views
8 follow
Basics Of Systems Biology...
network
updated 9 months ago by
bryan.smith4756
• 0 • written 13.7 years ago by
pixie@bioinfo
★ 1.5k
31
votes
23
replies
30k
views
15 follow
Amino Acid Change To Genomic Location
snp
amino-acids
updated 3 months ago by
gernophil
▴ 80 • written 12.3 years ago by
Preethi
▴ 110
31
votes
41
replies
2.7k
views
12 follow
Forum:
Question regarding journal publications
publications
journals
updated 10 months ago by
Ram
43k • written 4.1 years ago by
K.Gee
▴ 40
31
votes
8
replies
13k
views
Experiences With Clc Genomics Workbench (Or Other Commercial Tools) For Next-Gen Sequencing
next-gen-sequencing
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Istvan Albert
100k
31
votes
12
replies
915
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
7 weeks ago by
karlaarz
▴ 90
31
votes
14
replies
12k
views
11 follow
Finding Rrna Genes In Metagenomic Data
rna
rRNA
metagenomics
updated 25 days ago by
Ram
43k • written 13.5 years ago by
toshnam
▴ 650
31
votes
30
replies
15k
views
6 follow
Tool:
BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, venn diagram, you name it.
gene
RNA-Seq
Venn-diagram
PCA
updated 10 months ago by
Ram
43k • written 5.9 years ago by
Jennifer Pham
▴ 450
31
votes
8
replies
8.2k
views
9 follow
Notepad and word will not read Fastq or FASTA files
software-error
fastq
written 9.1 years ago by
paul.sillence
• 0
31
votes
11
replies
5.7k
views
6 follow
Assessing Cluster Reliability/Stability In Microarray Experiments
clustering
microarray
gene
updated 5 months ago by
Ram
43k • written 14.0 years ago by
toni
★ 2.2k
31
votes
16
replies
2.1k
views
8 follow
Forum:
What is in your opinion the current state-of-the-art sequencing platform for genomic assembly (Nov 2019)
next-gen-sequencing
assembly
genome
updated 10 months ago by
Ram
43k • written 4.5 years ago by
Antonio R. Franco
★ 5.1k
30
votes
13
replies
3.7k
views
11 follow
Forum:
what is your daily must see bioinformatics web site?
learn
technology
updated 10 months ago by
Ram
43k • written 9.6 years ago by
Medhat
9.7k
30
votes
15
replies
10k
views
7 follow
Tool:
Snakemake--Python-Based Workflow Management
workflow
snakemake
python
updated 10 months ago by
Ram
43k • written 10.4 years ago by
Sean Davis
26k
30
votes
16
replies
2.2k
views
9 follow
Forum:
Which programming langauge shall I start as a beginner in Bioinformatics
programming-language
single-cell
updated 10 months ago by
Ram
43k • written 4.0 years ago by
nkg.bb
• 0
30
votes
6
replies
9.3k
views
K-Mer Based Sequencing Contamination Detection
sequencing
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Darked89
4.6k
30
votes
6
replies
13k
views
What Are Some Good Free Bioinformatics And Computational Biology Books?
books
online
updated 5 months ago by
Ram
43k • written 14.0 years ago by
hadasa
★ 1.0k
30
votes
12
replies
3.8k
views
Trying to understand the maths behind one Limma function
limma
RNA-Seq
batch-effect
updated 4 days ago by
Ram
43k • written 4.0 years ago by
Mozart
▴ 330
30
votes
18
replies
16k
views
8 follow
Is It Possible For Two Different Affymetrix Probe Set Id To Have Common Annotations To Same Gene ?
microarray
annotation
affymetrix
probeset
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Khader Shameer
18k
30
votes
13
replies
11k
views
Web Tool That Converts A Pubmed Query Into A Wordle Of The Abstracts
pubmed
updated 9 months ago by
Ram
43k • written 13.7 years ago by
Andrew Su
4.9k
30
votes
19
replies
10.0k
views
6 follow
Forum:
Programming language use distribution from recent programs / articles
programming-language
programs
updated 11 months ago by
Ram
43k • written 7.0 years ago by
Eric Normandeau
11k
29
votes
12
replies
13k
views
10 follow
What Is The Best Place In The World To Do Bioinformatics?
education
subjective
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Manuel Corpas
▴ 650
29
votes
18
replies
3.3k
views
7 follow
Forum:
Should I quit PhD program?
education
career
research
phd
updated 11 months ago by
Ram
43k • written 5.9 years ago by
George
▴ 30
29
votes
20
replies
3.6k
views
Tool:
FastQt : a clone of FastQC in C++/Qt
fastqc
Cpp
fastq
Qt
updated 9 months ago by
Ram
43k • written 7.4 years ago by
sacha
★ 2.4k
29
votes
11
replies
8.7k
views
An Interactive Heatmap For Viewing Expression Data Matrices
heatmap
microarray
visualization
updated 9 months ago by
Ram
43k • written 13.6 years ago by
Qdjm
1.9k
29
votes
18
replies
2.7k
views
12 follow
Forum:
what are the big questions in bioinformatics field nowadays
genome
updated 10 months ago by
Ram
43k • written 4.2 years ago by
t4192
▴ 20
29
votes
10
replies
3.1k
views
Forum:
How do you perform functional testing for your Bioinformatics tools?
development
testing
bug
reliability
updated 11 months ago by
Ram
43k • written 7.1 years ago by
shenwei356
8.4k
29
votes
13
replies
8.4k
views
7 follow
Tools For Visualizing Significantly Altered Pathways And Related Genes In A Pathway Graph ?
pathway-visualization
updated 9 months ago by
Ram
43k • written 13.3 years ago by
Dejian
★ 1.3k
29
votes
5
replies
3.5k
views
How Important Is It To Belong To A Professional Society In Computational Biology?
career
subjective
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Manuel Corpas
▴ 650
28
votes
13
replies
14k
views
Taxonomy Of Blast Hits
blast
taxonomy
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Darked89
4.6k
28
votes
16
replies
31k
views
11 follow
How Do I Convert From Bed Format To Gff Format?
gff
galaxy
bed
updated 6 months ago by
Ram
43k • written 14.6 years ago by
Istvan Albert
100k
28
votes
11
replies
19k
views
9 follow
Salary For A Bioinformatics Programmer In Europe?
career
updated 11 months ago by
Ram
43k • written 12.6 years ago by
Jeroen Van Goey
2.3k
28
votes
11
replies
34k
views
10 follow
Samtools View: Only Forward Or Reverse Strand
samtools
strand
updated 12 weeks ago by
shaoqian ma
• 0 • written 12.4 years ago by
Gregor Rot
▴ 540
28
votes
27
replies
15k
views
9 follow
Extracting A Subset Of Sequences From A Fastq File (Biopython Speed)
biopython
python
fastq
next-gen-sequencing
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Darked89
4.6k
28
votes
7
replies
11k
views
Tool:
Quast Is A Convenient Tool For Assembly Evaluation
assembly
quality
updated 9 months ago by
Ram
43k • written 11.1 years ago by
Nikolay Vyahhi
★ 1.3k
28
votes
20
replies
21k
views
7 follow
how do I run repeat masker
repeatmasker
updated 3 months ago by
Andrzej Zielezinski
11k • written 8.3 years ago by
ksi216
▴ 80
28
votes
14
replies
11k
views
7 follow
Compare Two Protein Sequences Using Local Blast
biopython
blast
updated 5 months ago by
Ram
43k • written 14.1 years ago by
satsurae
▴ 120
28
votes
19
replies
15k
views
10 follow
How To Generate Mutations In Sequences Of A Fasta File?
fasta
python
mutation
sequence
updated 9 months ago by
Ram
43k • written 12.6 years ago by
Geparada
★ 1.5k
28
votes
7
replies
19k
views
6 follow
VCF merge or concatenate?
snp
VCF
VCFTools
written 4.8 years ago by
rokragna295
▴ 60
28
votes
17
replies
5.0k
views
7 follow
Tool:
PCAtools: everything Principal Components Analysis
eigenvector
pca
bioconductor
R
updated 10 months ago by
Ram
43k • written 5.2 years ago by
Kevin Blighe
87k
28
votes
4
replies
15k
views
Tool:
Plotting GSEA output in R
RNA-Seq
javaGSEA
GSEA
updated 10 months ago by
Ram
43k • written 7.7 years ago by
thomaskuilman
▴ 850
28
votes
22
replies
57k
views
11 follow
How To Convert List Of Entrez Ids Into Gene Name
r
genomics
entrez
updated 9 months ago by
cwang3444
• 0 • written 11.0 years ago by
grosy
▴ 90
28
votes
15
replies
2.2k
views
12 follow
Forum:
Should bioinformaticians learn the scientific names of plants and animals?
sequence
updated 11 months ago by
Ram
43k • written 5.8 years ago by
ivan.radonov
▴ 10
28
votes
13
replies
15k
views
7 follow
Create Consensus Sequences For Sequence Pairs Within A Multiple Alignment?
consensus
phylogenetics
fasta
multiple-alignment
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Dave Lunt
★ 2.0k
28
votes
16
replies
9.2k
views
7 follow
What Does Bwa'S '-N' Parameter Mean?
bwa
updated 8 months ago by
Feng Tian
▴ 20 • written 12.3 years ago by
Panos
★ 1.8k
27
votes
17
replies
22k
views
8 follow
BioPython: convert fasta to fastq without quality score input file
parsing
phred
fasta
BioPython
fastq
updated 10 months ago by
capemaster
• 0 • written 10.0 years ago by
Josh Herr
5.8k
27
votes
21
replies
38k
views
12 follow
Converting a VCF with SNPs and indels to BED format
next-gen
updated 6 months ago by
Axzd
▴ 70 • written 9.8 years ago by
onter
▴ 170
27
votes
22
replies
5.7k
views
8 follow
Forum:
Recommendations of Linux distros for beginners in bioinformatics
training
linux
updated 11 months ago by
Ram
43k • written 6.4 years ago by
ropolocan
▴ 810
1,000 results • Page
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bcftools multiple commands
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C: How to setup a Summarized Experiment
A: How to download genome assemblies from NCBI with a list of GCA identifiers?
what's the genomic location and name of gene responsible for orange and black patches in calico cats
Comment: featureCounts --primary tag counting uniquely mapped reads and excludes multi-ma
Answer: Duplicate marking, read names, and the SRA
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Comment: how to find genes that are significantly expressed in brain cortex samples
by
Ram
43k
Can you explain the normalization or give me a link that describes it, please? Comparison across samples will always be caveated as RNA-seq…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
Sorry, I see how harsh I come across. It's not good practice to use multiple versions of R in the same project. I can understand legacy pro…
Answer: MEGA Analysis Issue on High-Performance Computer
by
Mensur Dlakic
★ 27k
> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★ 1.7k
Some of us are still learning and fall foul to knowledge limitation fairly regularly. Luckily we have people to put us in our place.
Answer: Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
by
GenoMax
141k
> I know that I should be able to collect protein sequences from the blastp results into a file, but I do not know how to do this. You c…
Comment: how to find genes that are significantly expressed in brain cortex samples
by
rheab1230
▴ 140
I got the normalized gene count from gtex portal. they use inverse quantile normalization
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
Matthias Zepper
4.5k
It is not entirely off, but evidently also not correct. Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
> so a single Rscript could utilise multiple environments and versions How is that sane, let alone "better"? Also, why use `snap` for curl…
Comment: how to find genes that are significantly expressed in brain cortex samples
by
Ram
43k
Normalized how?
Comment: Duplicate marking, read names, and the SRA
by
GenoMax
141k
With public data one has to work with what is there. If the information about position is absent then only thing that could be done is to l…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★ 1.7k
Or better yet. To have an R package that allows access to conda environments via "conda list env" so that environments can be switched with…
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
GenoMax
141k
If GPT is right then it says that: > The specific gene responsible for the orange and non-orange (black or > gray) fur colors in cats is t…
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
Jean-Karim Heriche
27k
As far as I know the Orange locus hasn't been mapped to a gene. Maybe this paper will help in narrowing the search: https://www.ncbi.nlm.ni…
Comment: Duplicate marking, read names, and the SRA
by
Luka
• 0
>Curios if there a reference for this? [Apparently it's not deprecated yet][1], but will be soon and the SRA intends for it to be at some …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
I prefer RStudio for new projects as well. The moment I need versions though, RStudio becomes a burden. I wish one could launch RStudio fro…
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