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1,000 results • Page
5 of 20
Sort: Votes
Rank
Views
Votes
Replies
32
votes
13
replies
9.9k
views
11 follow
Any Recommendations For Statistical Genetics Texts?
genetics
statistics
gwas
updated 4 months ago by
Angelo
• 0 • written 13.7 years ago by
Shigeta
▴ 180
31
votes
14
replies
24k
views
7 follow
Difference between tSNE and PCA analysis
next-gen
rna-seq
updated 9 weeks ago by
Jeremy Leipzig
22k • written 6.2 years ago by
Qingyang Xiao
▴ 160
31
votes
22
replies
13k
views
6 follow
Tool:
SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
FASTQ
SeqKit
FASTA
updated 10 months ago by
Ram
43k • written 7.6 years ago by
shenwei356
8.4k
31
votes
14
replies
12k
views
11 follow
Finding Rrna Genes In Metagenomic Data
rna
rRNA
metagenomics
updated 4 weeks ago by
Ram
43k • written 13.5 years ago by
toshnam
▴ 650
31
votes
12
replies
939
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
7 weeks ago by
karlaarz
▴ 90
31
votes
11
replies
5.7k
views
6 follow
Assessing Cluster Reliability/Stability In Microarray Experiments
clustering
microarray
gene
updated 5 months ago by
Ram
43k • written 14.0 years ago by
toni
★ 2.2k
31
votes
41
replies
2.7k
views
12 follow
Forum:
Question regarding journal publications
publications
journals
updated 10 months ago by
Ram
43k • written 4.2 years ago by
K.Gee
▴ 40
31
votes
8
replies
13k
views
Experiences With Clc Genomics Workbench (Or Other Commercial Tools) For Next-Gen Sequencing
next-gen-sequencing
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Istvan Albert
100k
31
votes
23
replies
30k
views
15 follow
Amino Acid Change To Genomic Location
snp
amino-acids
updated 3 months ago by
gernophil
▴ 80 • written 12.3 years ago by
Preethi
▴ 110
31
votes
11
replies
6.6k
views
8 follow
Basics Of Systems Biology...
network
updated 9 months ago by
bryan.smith4756
• 0 • written 13.7 years ago by
pixie@bioinfo
★ 1.5k
31
votes
16
replies
2.2k
views
8 follow
Forum:
What is in your opinion the current state-of-the-art sequencing platform for genomic assembly (Nov 2019)
next-gen-sequencing
assembly
genome
updated 10 months ago by
Ram
43k • written 4.5 years ago by
Antonio R. Franco
★ 5.1k
31
votes
8
replies
8.2k
views
9 follow
Notepad and word will not read Fastq or FASTA files
software-error
fastq
written 9.1 years ago by
paul.sillence
• 0
31
votes
30
replies
15k
views
6 follow
Tool:
BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, venn diagram, you name it.
gene
RNA-Seq
Venn-diagram
PCA
updated 10 months ago by
Ram
43k • written 5.9 years ago by
Jennifer Pham
▴ 450
30
votes
13
replies
3.7k
views
11 follow
Forum:
what is your daily must see bioinformatics web site?
learn
technology
updated 10 months ago by
Ram
43k • written 9.6 years ago by
Medhat
9.7k
30
votes
6
replies
9.3k
views
K-Mer Based Sequencing Contamination Detection
sequencing
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Darked89
4.6k
30
votes
15
replies
10k
views
7 follow
Tool:
Snakemake--Python-Based Workflow Management
workflow
snakemake
python
updated 10 months ago by
Ram
43k • written 10.4 years ago by
Sean Davis
26k
30
votes
13
replies
11k
views
Web Tool That Converts A Pubmed Query Into A Wordle Of The Abstracts
pubmed
updated 10 months ago by
Ram
43k • written 13.7 years ago by
Andrew Su
4.9k
30
votes
12
replies
3.8k
views
Trying to understand the maths behind one Limma function
limma
RNA-Seq
batch-effect
updated 9 days ago by
Ram
43k • written 4.0 years ago by
Mozart
▴ 330
30
votes
6
replies
13k
views
What Are Some Good Free Bioinformatics And Computational Biology Books?
books
online
updated 5 months ago by
Ram
43k • written 14.0 years ago by
hadasa
★ 1.0k
30
votes
18
replies
16k
views
8 follow
Is It Possible For Two Different Affymetrix Probe Set Id To Have Common Annotations To Same Gene ?
microarray
annotation
affymetrix
probeset
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Khader Shameer
18k
30
votes
16
replies
2.2k
views
9 follow
Forum:
Which programming langauge shall I start as a beginner in Bioinformatics
programming-language
single-cell
updated 10 months ago by
Ram
43k • written 4.0 years ago by
nkg.bb
• 0
30
votes
19
replies
10k
views
6 follow
Forum:
Programming language use distribution from recent programs / articles
programming-language
programs
updated 11 months ago by
Ram
43k • written 7.0 years ago by
Eric Normandeau
11k
29
votes
12
replies
13k
views
10 follow
What Is The Best Place In The World To Do Bioinformatics?
education
subjective
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Manuel Corpas
▴ 650
29
votes
18
replies
3.3k
views
7 follow
Forum:
Should I quit PhD program?
education
career
research
phd
updated 11 months ago by
Ram
43k • written 6.0 years ago by
George
▴ 30
29
votes
18
replies
2.7k
views
12 follow
Forum:
what are the big questions in bioinformatics field nowadays
genome
updated 10 months ago by
Ram
43k • written 4.2 years ago by
t4192
▴ 20
29
votes
13
replies
8.4k
views
7 follow
Tools For Visualizing Significantly Altered Pathways And Related Genes In A Pathway Graph ?
pathway-visualization
updated 10 months ago by
Ram
43k • written 13.3 years ago by
Dejian
★ 1.3k
29
votes
5
replies
3.5k
views
How Important Is It To Belong To A Professional Society In Computational Biology?
career
subjective
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Manuel Corpas
▴ 650
29
votes
10
replies
3.1k
views
Forum:
How do you perform functional testing for your Bioinformatics tools?
development
testing
bug
reliability
updated 11 months ago by
Ram
43k • written 7.1 years ago by
shenwei356
8.4k
29
votes
20
replies
3.7k
views
Tool:
FastQt : a clone of FastQC in C++/Qt
fastqc
Cpp
fastq
Qt
updated 10 months ago by
Ram
43k • written 7.4 years ago by
sacha
★ 2.4k
29
votes
11
replies
8.7k
views
An Interactive Heatmap For Viewing Expression Data Matrices
heatmap
microarray
visualization
updated 10 months ago by
Ram
43k • written 13.6 years ago by
Qdjm
1.9k
28
votes
13
replies
14k
views
Taxonomy Of Blast Hits
blast
taxonomy
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Darked89
4.6k
28
votes
16
replies
31k
views
11 follow
How Do I Convert From Bed Format To Gff Format?
gff
galaxy
bed
updated 6 months ago by
Ram
43k • written 14.6 years ago by
Istvan Albert
100k
28
votes
11
replies
19k
views
9 follow
Salary For A Bioinformatics Programmer In Europe?
career
updated 11 months ago by
Ram
43k • written 12.7 years ago by
Jeroen Van Goey
2.3k
28
votes
11
replies
34k
views
10 follow
Samtools View: Only Forward Or Reverse Strand
samtools
strand
updated 3 months ago by
shaoqian ma
• 0 • written 12.4 years ago by
Gregor Rot
▴ 540
28
votes
19
replies
15k
views
10 follow
How To Generate Mutations In Sequences Of A Fasta File?
fasta
python
mutation
sequence
updated 10 months ago by
Ram
43k • written 12.6 years ago by
Geparada
★ 1.5k
28
votes
13
replies
15k
views
7 follow
Create Consensus Sequences For Sequence Pairs Within A Multiple Alignment?
consensus
phylogenetics
fasta
multiple-alignment
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Dave Lunt
★ 2.0k
28
votes
20
replies
21k
views
7 follow
how do I run repeat masker
repeatmasker
updated 3 months ago by
Andrzej Zielezinski
11k • written 8.4 years ago by
ksi216
▴ 80
28
votes
14
replies
11k
views
7 follow
Compare Two Protein Sequences Using Local Blast
biopython
blast
updated 5 months ago by
Ram
43k • written 14.1 years ago by
satsurae
▴ 120
28
votes
16
replies
9.3k
views
7 follow
What Does Bwa'S '-N' Parameter Mean?
bwa
updated 8 months ago by
Feng Tian
▴ 20 • written 12.3 years ago by
Panos
★ 1.8k
28
votes
15
replies
2.2k
views
12 follow
Forum:
Should bioinformaticians learn the scientific names of plants and animals?
sequence
updated 11 months ago by
Ram
43k • written 5.8 years ago by
ivan.radonov
▴ 10
28
votes
7
replies
19k
views
6 follow
VCF merge or concatenate?
snp
VCF
VCFTools
written 4.8 years ago by
rokragna295
▴ 60
28
votes
7
replies
11k
views
Tool:
Quast Is A Convenient Tool For Assembly Evaluation
assembly
quality
updated 10 months ago by
Ram
43k • written 11.2 years ago by
Nikolay Vyahhi
★ 1.3k
28
votes
4
replies
15k
views
Tool:
Plotting GSEA output in R
RNA-Seq
javaGSEA
GSEA
updated 10 months ago by
Ram
43k • written 7.7 years ago by
thomaskuilman
▴ 850
28
votes
27
replies
15k
views
9 follow
Extracting A Subset Of Sequences From A Fastq File (Biopython Speed)
biopython
python
fastq
next-gen-sequencing
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Darked89
4.6k
28
votes
22
replies
57k
views
11 follow
How To Convert List Of Entrez Ids Into Gene Name
r
genomics
entrez
updated 10 months ago by
cwang3444
• 0 • written 11.0 years ago by
grosy
▴ 90
28
votes
17
replies
5.0k
views
7 follow
Tool:
PCAtools: everything Principal Components Analysis
eigenvector
pca
bioconductor
R
updated 10 months ago by
Ram
43k • written 5.2 years ago by
Kevin Blighe
87k
27
votes
17
replies
22k
views
8 follow
BioPython: convert fasta to fastq without quality score input file
parsing
phred
fasta
BioPython
fastq
updated 10 months ago by
capemaster
• 0 • written 10.0 years ago by
Josh Herr
5.8k
27
votes
21
replies
38k
views
12 follow
Converting a VCF with SNPs and indels to BED format
next-gen
updated 6 months ago by
Axzd
▴ 70 • written 9.8 years ago by
onter
▴ 170
27
votes
4
replies
2.7k
views
How Should A Departing Programmer Organize Things For Successors?
software
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Michael Hoffman
▴ 330
27
votes
10
replies
4.5k
views
7 follow
Which Are All The Databases For Annotations Of Biological Pathways?
pathway
database
annotation
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Giovanni M Dall'Olio
28k
1,000 results • Page
5 of 20
Recent Votes
Comment: Adding CB tag to bam file
Comment: alignment result
Comment: clustalo - align milions of short seq, memory issue
Answer: clustalo - align milions of short seq, memory issue
Comment: downloading genomes in fasta format from accession ids
Comment: PCA plot (Suggestions Needed)
Answer: PCA plot (Suggestions Needed)
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Recent Replies
Comment: Adding CB tag to bam file
by
Pierre Lindenbaum
161k
samtools addreplacerg is for read groups. This is not what OP asked.
Comment: Adding CB tag to bam file
by
Maria
• 0
When I try ``` samtools addreplacerg -r "@CB\tID:$cell" -o $cell.bam $LINE``` the CB tag gets add to the header, but the tag in every line …
Answer: Figures are disappeared from html report of SnpEff
by
Pierre Lindenbaum
161k
the remote website providing the javascript or/and the images is down or you're now behind a proxy. Check the firefox console: https://fire…
Comment: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
161k
ah ! and your code doesn't work because clinvar ID is not a rs-ID.
Answer: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
161k
$ cat input.rs rs11203366 rs11203367 rs874881 rs776453694 rs80324279 rs324420 rs112766203 wget -…
Comment: Highest variable features in single cell data
by
ATpoint
82k
> and these cells are not even in a single cluster. What does this mean? If you run clustering on all cells then every cell is assigned t…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
by
Bertalan_Takacs
▴ 90
Yes, I can tell that, but as far as I see it doesn't contain any other information about the genomes, such as if they were representative i…
Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in
by
b.contreras.moreira
▴ 170
You can try <https://github.com/inab/trimal>
Comment: To get p-values for the TPM
by
VITALA
• 0
yes i want what rsem does and i did try with prior-enhanced option/pRSEM, but i think pRSEM is for chipseq data
Comment: alignment result
by
ahmad.sajad4541
• 0
Thank you so much. Should i proceed for annotation step?
Comment: PCA plot (Suggestions Needed)
by
swbarnes2
14k
The code you already posted in the bioconductor board had simulated data, and the PCA image is the same.
Answer: Network Alignment
by
Scooter
▴ 280
Unfortunately, it's not working for me either, and the web site doesn't exist anymore. You might try reaching out to the authors, but I kn…
Answer: How could I generate a gi_taxid_nucl.dmp file similar to the one previously host
by
ZhangYuanfeng
• 0
JUST GIVE THE ANSWER! Here is the solution: ```bash aria2c -c -s 4 -j 4 \ https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/accession2taxid/pd…
Comment: PCA plot (Suggestions Needed)
by
Aaliya
▴ 10
I have actually used DESeq2 data.
Comment: Why cd-hit-est not work when sequence identity threshold<0.95?
by
Dateline
• 0
So, why? I have 18GB of data, and when -c=0.95, the run ends in about two days, while when -c=0.9, it has been three days and only a little…
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