MuSiC Posts

C: Barcode cross contamination by Seigfried • 60
[@genomax][1] I realised that as well. For a good sequencing run, I found that I discarded around...
C: Count the number of homozygous and heterozygous variants in VCF file by aadhirareddy1323 • 20
@finswimmer,I dont want to make the difference , but want to exclude 0|2,0|3 etc and keep only co...
C: Peptide cutter library by jongyook2 • 0
Thank you very much!
A: Extract number of SNPs for any given gene by Andrew Su ♦ 4.8k
You can get this info using the myvariant.info API. For example, suppose you are interested in S...
C: How do I use t-test for genes in R? by JC ♦ 7.0k
Even when you can do the test by yourself, it's better if you use the tools already implement for...
A: what is vdb_names in blastdb_aliastool by h.mon ♦ 22k
VDB is a database format to store "next-gen" sequencing data. See the handout [Using SRA Toolkit ...
C: psmc bootstrap plotting? by momccarthy.3 • 0
Hey I'm having this same problem, did you find a solution in the end? Cheers, Morgan
C: Identifying consensus sequence between multiple Arabidopsis genome sequences by bioinforesearchquestions • 190
Hi VKKodali, I am trying to find consensus between the full genome sequence not against the refer...
C: Bio.PDB parsing PDB file by RamRS ♦ 19k
> I thought Bio.PDB was automatically set up to get files from the PDB database I don't think...
C: Identifying consensus sequence between multiple Arabidopsis genome sequences by vkkodali • 700
NCBI has a few Arabidopsis genome assembly - assembly alignments [here](ftp://ftp.ncbi.nlm.nih.go...
C: Filtering fastq vs BAM for fragment size range by ATpoint ♦ 11k
Yeah, but I cannot answer this, as I never tried. I would always go for the after-alignment step ...
C: load/parse cwl using Java by pr80ik • 0
reported as [github issue][1] [1]: https://github.com/common-workflow-language/cwlavro/issues/16

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