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1,000 results • Page
2 of 20
Sort: replies
Rank
Views
Votes
Replies
4
votes
20
replies
1.3k
views
How can I count aminoacid residues from a HUGE compressed fasta file?
sequence
3.4 years ago by
schlogl
▴ 150
8
votes
20
replies
1.8k
views
Converting runpsipred Script to Work on Windows OS
psipred
windows
updated 12 months ago by
Ram
39k • written 4.8 years ago by
Bara'a
▴ 270
8
votes
20
replies
1.8k
views
Getting read depth for normal and tumour
R
WGS
vcf
4.2 years ago by
fi1d18
★ 4.2k
5
votes
20
replies
3.3k
views
DiscoSnp Segmentation fault
snp
discosnp
updated 8 months ago by
Ram
39k • written 7.8 years ago by
Hans
▴ 130
6
votes
20
replies
5.6k
views
filling of missing genotype information in merged variant call vcf file
SNP
5.0 years ago by
princy149
▴ 80
9
votes
20
replies
3.4k
views
Solve SAM issues flagged by Picard's ValidateSamFile
Picard
SAM
updated 9 weeks ago by
Ram
39k • written 4.8 years ago by
marongiu.luigi
▴ 680
8
votes
20
replies
2.3k
views
Why does cufflinks split this transcript?
RNA-Seq
cufflinks
assembly
5.4 years ago by
corend
▴ 70
5
votes
20
replies
7.4k
views
How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
ChIP-Seq
homer
6.8 years ago by
varsha619
▴ 90
6
votes
19
replies
2.2k
views
Clustering for Single-cell RNA-seq Data
clustering
R
single-cell
3.8 years ago by
aloke205
▴ 40
0
votes
19
replies
1.1k
views
map fasts files
RNA-Seq
FASTQ
R
5.3 years ago by
Learner
▴ 260
5
votes
19
replies
1.3k
views
how I can come up with a permanent error
R
software error
6.1 years ago by
fi1d18
★ 4.2k
7
votes
19
replies
2.4k
views
mapping script process sleeping on server.
alignment
updated 12 months ago by
Ram
39k • written 8.2 years ago by
lvogel
▴ 30
9
votes
19
replies
1.7k
views
There are any way to use a script for feed emboss with fasta sequence?
sequence
3.4 years ago by
schlogl
▴ 150
0
votes
19
replies
1.1k
views
best blast strategy: read vs cluster?
alignment
blast
search
strategy
3.5 years ago by
marongiu.luigi
▴ 680
7
votes
19
replies
6.4k
views
[R] Microarray analysis interpreting logFC after makeContrasts
microarray
R
updated 16 months ago by
Ram
39k • written 8.6 years ago by
mheiser1
▴ 10
10
votes
19
replies
2.6k
views
What is a difference between uniprot and 'nr. Non-redundant GenBank...'?
Genebank
blast
UniProt
updated 2.0 years ago by
GenoMax
129k • written 2.0 years ago by
matt
▴ 20
17
votes
19
replies
2.2k
views
Sorting sequences according header
software error
sequence
Assembly
next-gen
6.8 years ago by
Gian77
▴ 60
0
votes
19
replies
2.1k
views
error related to vcfstats
numpy
snp
vcf
vcfstats
22 months ago by
rheab1230
▴ 140
0
votes
19
replies
8.3k
views
Skip orientation as there are not enough pairs by bwa mem
whole genome
bwa
paired end sequencing
4.0 years ago by
seta
★ 1.8k
18
votes
19
replies
1.7k
views
6 follow
Extremely important marker gene has many reads based on IGV viewer but no quantified reads
rna-seq
sequencing
igv
alignment
next-gen
updated 6 months ago by
Ram
39k • written 4.4 years ago by
rbkh09
• 0
4
votes
19
replies
2.5k
views
Use machine learning as classifier
R
rRNA
16S
18S
ITS
updated 5.7 years ago by
Biostar
20 • written 5.9 years ago by
cool.abbecker
▴ 30
22
votes
19
replies
2.5k
views
targets of a list of miRNAs
miRNAs
RNA-Seq
DEanalysis
target-prediction
6.6 years ago by
fi1d18
★ 4.2k
6
votes
19
replies
1.3k
views
Fastq header modification
sequence
next-gen
updated 5.2 years ago by
Ram
39k • written 5.2 years ago by
Guillaume
• 0
0
votes
19
replies
3.3k
views
Difficulty installing GATKtoolkit
GATK
Variant calling
SNPs
Indels
5.4 years ago by
jaqx008
▴ 110
0
votes
19
replies
1.2k
views
scatterplot in R
microarray
expression
gene
updated 7 months ago by
Ram
39k • written 8 months ago by
bioinformatics
▴ 10
3
votes
19
replies
4.9k
views
gatk-launch file missing
next-gen
sequencing
software error
updated 4.1 years ago by
finswimmer
16k • written 4.1 years ago by
sruthi
▴ 40
1
vote
19
replies
5.8k
views
Conda install package - different internals
R
software error
updated 3.8 years ago by
Biostar
20 • written 3.8 years ago by
lihe.liu
▴ 30
1
vote
19
replies
1.6k
views
High no feature counts in ht-seq counts
RNA-Seq
sequencing
4.5 years ago by
eozcan
▴ 10
15
votes
19
replies
1.4k
views
trimmomaric command for a fasta file?
trimmomatic
updated 5.1 years ago by
Ram
39k • written 5.1 years ago by
Nadin.asal
• 0
13
votes
19
replies
4.5k
views
bbmerge not joining paired-end reads
bbmerge
alignment
5.5 years ago by
bioplanet
▴ 60
2
votes
18
replies
5.3k
views
No differentially expressed genes using DESeq2
RNA-Seq
deseq2
6.5 years ago by
Sumit Paliwal
▴ 40
2
votes
18
replies
1.8k
views
I need help in this
gene
weblems
alignment
updated 10 months ago by
Ram
39k • written 7.4 years ago by
efosa15
• 0
16
votes
18
replies
4.1k
views
8 follow
Python Program to read .fasta file to .txt file
Python
updated 3.8 years ago by
Mensur Dlakic
★ 23k • written 3.8 years ago by
tikshyadav19
• 0
3
votes
18
replies
2.1k
views
Help creating Deseq2 count matrix from separate files
or
Sample
matrix
updated 22 months ago by
Ram
39k • written 23 months ago by
Nai
▴ 50
4
votes
18
replies
3.4k
views
Significance of reads mapping to Viruses - FusionCatcher
RNA-Seq
virus
reads
fusion
updated 9 months ago by
Ram
39k • written 7.5 years ago by
Joel TM
▴ 60
7
votes
18
replies
4.0k
views
Bowtie indexing of a fasta file that consists of a large amount of sequences
bowtie
alignment
genome
6.6 years ago by
valerie
▴ 100
7
votes
18
replies
7.7k
views
9 follow
Cuffmerge running error
RNA-Seq
updated 15 months ago by
Ram
39k • written 8.5 years ago by
hana
▴ 190
14
votes
18
replies
4.2k
views
GATK Haplotype Caller
next-gen
GATK
haplotype
caller
contigs
updated 6.4 years ago by
Biostar
20 • written 6.6 years ago by
plink_9857
▴ 50
7
votes
18
replies
4.0k
views
Fold change UP and Down in dplyr calculation
R
5.8 years ago by
1769mkc
★ 1.1k
4
votes
18
replies
12k
views
Alignment with BWA and SAMtools
BWA
SAM-file
SAMtools
updated 2.6 years ago by
Biostar
20 • written 4.8 years ago by
Shelle
▴ 30
0
votes
18
replies
1.0k
views
No gene name after annovar vcf file processing
vcf
annovar
3.6 years ago by
valerie
▴ 100
4
votes
18
replies
2.6k
views
Inline barcodes in the reverse reads
barcodes
6.6 years ago by
Picasa
▴ 640
5
votes
18
replies
5.3k
views
EnhancedVolcano plot error: Log2foldchange is not numeric!
R
EnhancedVolcano
3.5 years ago by
michelle.piquet
▴ 60
1
vote
18
replies
2.2k
views
Why big gaps when I use Entrez Eutils to download protein coding sequences.
entrez
eutils
6.8 years ago by
Tom
▴ 40
1
vote
18
replies
1.2k
views
Find tissues that are functionally related
tissue
functionally-related
gene-expression
updated 3.7 years ago by
Biostar
20 • written 3.8 years ago by
Natasha
▴ 40
3
votes
18
replies
1.1k
views
6 follow
What sequencing/alignment artifact is this?
variants
mutect
sequencing
alignment
mitochondria
7 months ago by
lacb
▴ 120
2
votes
18
replies
1.9k
views
Bwa on multiple processor
np
mpirun
bwa
alignment
16 months ago by
shivangi.agarwal800
▴ 120
0
votes
18
replies
1.3k
views
freebayes error variant calling
snp
2.8 years ago by
evelyn
▴ 220
20
votes
17
replies
5.1k
views
HiSeq 4000 PhiX screening and removal using bbduk
spikein
filtering
bbmap
bbduk
phix
5.8 years ago by
Anand Rao
▴ 560
0
votes
17
replies
1.1k
views
Transcripts with no read support
RNA-Seq
alignment
assembly
salmon
2.7 years ago by
Dunois
★ 2.3k
1,000 results • Page
2 of 20
Recent Votes
Comment: Salmon Index
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Answer: how to intersect multiple bed files and get results in uncollapsed genomic inter
A: Use padj instead of p-value to ploting DE genes using EnhancedVolcano
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Comment: gatk Hardfilter Error
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154k
the formatting is missing in your question. how do you break lines ? did you add a antislash at the end of the lines ? didn't you forgot th…
Comment: Salmon Index
by
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• 0
Thank you! I've made the decoy before, but I'm trying to redo it since I believe the first time I completed this incorrectly. The page Salm…
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@Trivas Thank you very much for your reply. if you don't mind could you share detail script. I'm very new to this. Sorry.
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Where did you get the data from? which reference build and gene model is it using? There are many versions of TCGA expression data around…
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You'll want to use the `pivot_longer` function in R so that you have three columns: 1) gene, 2) condition, 3) value. You can then use ggplo…
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129k
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3.3k
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