23
votes
22
replies
38k
views
6 follow
4
votes
4
replies
33k
views
written 6.5 years ago by
entheologist33
▴
100
20
votes
15
replies
25k
views
8 follow
4
votes
13
replies
25k
views
6 follow
updated 8 months ago by
Qboy
•
0
•
written 5.1 years ago by
sambioinfo2018
▴
20
4
votes
6
replies
23k
views
1
vote
3
replies
23k
views
updated 4.7 years ago by
Pierre Lindenbaum
153k
•
written 4.7 years ago by
elhlalisoufiane
▴
20
3
votes
4
replies
21k
views
9
votes
4
replies
20k
views
5.9 years ago by
ariel.balter
▴
190
2
votes
4
replies
20k
views
updated 7.0 years ago by
GenoMax
127k
•
written 7.0 years ago by
31sharmajittu1991
•
0
1
vote
5
replies
17k
views
updated 5.3 years ago by
eteleeb
•
0
•
written 5.4 years ago by
ago1mutant
▴
10
7
votes
16
replies
17k
views
6.7 years ago by
aggregatibacter
▴
170
27
votes
17
replies
16k
views
12 follow
2
votes
8
replies
16k
views
2
votes
10
replies
16k
views
updated 18 months ago by
Ram
38k
•
written 7.5 years ago by
cyril-cros
▴
940
16
votes
38
replies
15k
views
2
votes
13
replies
15k
views
updated 6.6 years ago by
GouthamAtla
12k
•
written 6.6 years ago by
sukesh1411
▴
30
6
votes
2
replies
15k
views
updated 8.9 years ago by
Biostar
20
•
written 9.4 years ago by
curious.genome
▴
40
0
votes
8
replies
15k
views
updated 6.3 years ago by
natasha.sernova
★
3.9k
•
written 6.3 years ago by
elisheva
▴
120
2
votes
2
replies
15k
views
6.7 years ago by
Ric
▴
430
2
votes
3
replies
15k
views
2.9 years ago by
David_emir
▴
460
4
votes
10
replies
14k
views
0
votes
3
replies
14k
views
16
votes
14
replies
14k
views
5
votes
4
replies
14k
views
5.1 years ago by
demoraesdiogo2017
▴
90
0
votes
3
replies
14k
views
2
votes
4
replies
14k
views
3
votes
1
reply
13k
views
1
vote
8
replies
13k
views
updated 11 months ago by
Ram
38k
•
written 8.1 years ago by
cafelumiere12
▴
80
8
votes
5
replies
13k
views
updated 4.6 years ago by
Ram
38k
•
written 7.1 years ago by
Peng Huang
▴
50
9
votes
13
replies
13k
views
6.1 years ago by
Patrick Brennan
▴
50
7
votes
4
replies
13k
views
updated 3.4 years ago by
schroder.julia
•
0
•
written 5.7 years ago by
Jokhe
▴
130
0
votes
2
replies
13k
views
3.1 years ago by
ovariohisterectomia
▴
40
1
vote
5
replies
12k
views
5.0 years ago by
n85825
•
0
3
votes
8
replies
12k
views
4.0 years ago by
luzglongoria
▴
40
6
votes
13
replies
12k
views
6.8 years ago by
rob.costa1234
▴
310
0
votes
2
replies
12k
views
updated 6.2 years ago by
Medhat
9.5k
•
written 6.2 years ago by
Sanchita Gupta
▴
30
6
votes
13
replies
12k
views
0
votes
4
replies
12k
views
4
votes
1
reply
12k
views
7.8 years ago by
sumaira.zaman10
▴
20
9
votes
13
replies
12k
views
3
votes
11
replies
12k
views
updated 11 months ago by
Ram
38k
•
written 8.2 years ago by
noushin.farnoud
▴
120
2
votes
4
replies
12k
views
9
votes
13
replies
12k
views
updated 4.5 years ago by
finswimmer
16k
•
written 4.5 years ago by
Shahzad
▴
30
4
votes
18
replies
12k
views
1
vote
2
replies
12k
views
updated 6.4 years ago by
Biostar
20
•
written 6.6 years ago by
zh.khodadadi
▴
20
0
votes
1
reply
11k
views
0
votes
3
replies
11k
views
0
votes
2
replies
11k
views
updated 3.7 years ago by
Morris_Chair
▴
330
•
written 3.7 years ago by
limjustinj
•
0
4
votes
12
replies
11k
views
4.7 years ago by
EagleEye
7.4k
3
votes
2
replies
11k
views
6.1 years ago by
jonessara770
▴
240
Recent Votes
Recent Locations •
All
Boston, 8 minutes ago
United States, 10 minutes ago
South Korea, 12 minutes ago
Brazil, 13 minutes ago
Australia, 15 minutes ago
University of Utah, 18 minutes ago
Canada, 23 minutes ago
Recent Awards •
All
Popular Question to
pavelasquezv
▴
50
Popular Question to
Anand Rao
▴
550
Scholar to
andres.firrincieli
3.2k
Popular Question to
chaco001
▴
10
Recent Replies
Answer: Align miRNA library (small RNA-seq) without trimming
by
Ming Tommy Tang
★
2.9k
bowtie 1 is good for short read < 50bp, how long is your read? bowtie2 is better for reads > 50 bp
Comment: Differences in RNAseq Variant Calling and Allele Specific Expression
by
afei
•
0
Hi!
I'm also confused by this. And the site (https://gatkforums.broadinstitute.org/gatk/categories/gatk-support-forum) is closed. Have you …
Comment: Variant caller reports a homozygous variant genotype, but more reads are associa
by
rebeliscu
▴
50
Indeed, I thought the quality might be a factor. Still, given the information, it seems odd to me that that call was made.
Thanks for you…
Answer: How can I use bcftools mpileup or an alternative to find ALL variants without an
by
cfos4698
▴
730
To generate a VCF file one would normally pipe the input of an `mpileup` command into an actual `call` command. For example:
```
bcftools …
Answer: PTM-aware protein folding / docking
by
Mensur Dlakic
★
23k
Your assumption is correct - AlphaFold pTM has nothing to do with post-translational modifications. See [**here**][1].
Not to discourage…
Answer: Admixture cv error
by
Declan
•
0
I had this issue today and was able to resolve it by changing the random seed Admixture uses by adding `-s time` (which sets the random see…
Answer: Total No of Genes of GENCODE Release 43
by
ahmad
•
0
The following is the correct code
gtf_43<-rtracklayer::import('gencode.v43.primary_assembly.annotation.gtf')
dtgtf_43<-data.frame(gtf_4…
Comment: Total No of Genes of GENCODE Release 43
by
ahmad
•
0
Hello,
thanks for replying, by mistake I paste the wrong code. the following is the corrected
gtf_43<-rtracklayer::import('gencode.v43…
Comment: Kallisto bustools for scRNA-seq
by
dsull
★
4.0k
I have no idea what that is besides a bunch of jumbled sequences. You'll need look up the structure of the reads / library from wherever yo…
Comment: Aberrant splicing in bulk RNAseq
by
dsull
★
4.0k
First thing: kallisto cannot interface with UMI-tools (kallisto doesn't use read headers and therefore you're stuck with "the kallisto way"…
Comment: Using Copy Number Alterations detected in other studies for the same tumor cell
by
lethalfang
▴
90
There is some somatic SV study on these HCC1395: https://doi.org/10.1186/s13059-022-02816-6.
There is also a CNA preprint from years ago b…
Comment: Somatic truth set
by
lethalfang
▴
90
Just in case things are hard to find, for the WGS/WES, these are the data (what the file names mean: https://sites.google.com/view/seqc2/ho…
Comment: How to get subset of a Seurat object based on metadata?
by
jv
★
1.0k
Hmm, not sure why `subset` doesn't match to '0:CD8 T cell' but maybe it's the ":"?
An alternative option is the following:
```
idx <- whi…
Comment: GO enrichment analysis
by
Jeremy
▴
780
g:Profiler has an Arabidopsis option:
[g:Profiler][1]
[1]: https://biit.cs.ut.ee/gprofiler/gost
Answer: Any tips in landing a bioinformatic job?
by
Carambakaracho
★
3.2k
The first job is a nightmare and you will need some luck. I understand you're looking for an industry offering. Unfortunately I've worked o…
Traffic: 1679 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6