Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this month
all time
today
this week
this month
this year
539 results • Page
1 of 11
Sort: replies
Rank
Views
Votes
Replies
0
votes
16
replies
3.2k
views
Gff to genbank - feature is missing
DNA
augustus
gff3
genbank
updated 12 days ago by
Ram
39k • written 5.0 years ago by
rororo
• 0
3
votes
16
replies
9.9k
views
combining z-scores into a single z-score value
excel
R
statistics
updated 5 days ago by
Ram
39k • written 4.2 years ago by
Star
▴ 60
1
vote
14
replies
2.8k
views
How to convert Haplotypes file to PLINK format data
R
plink
updated 12 days ago by
Ram
39k • written 5.1 years ago by
bha
▴ 80
7
votes
12
replies
875
views
Integrated genes from bulk RNA seq and ATAC seq
bulk-RNA
integrated
ATAC-seq
updated 11 days ago by
Sasha
▴ 180 • written 17 days ago by
Chris
▴ 100
0
votes
12
replies
2.9k
views
comparative analysis of two strains of bacteria's genomes
genome
gene
updated 18 days ago by
Ram
39k • written 5.6 years ago by
fonteneaudam
▴ 20
6
votes
12
replies
590
views
Help with error in cellranger
Cellranger
updated 19 days ago by
GenoMax
129k • written 20 days ago by
Chris
▴ 100
3
votes
12
replies
2.1k
views
What is NCBI Gene ID, where to find it and how to convert to entrez ID?
RNA-Seq
updated 3 days ago by
Pegasus
▴ 90 • written 3.7 years ago by
mnazir
▴ 10
1
vote
10
replies
2.6k
views
How to specify/calculate subject coverage of the alignment (alignment of query[protein sequence] and subject[Nucleotide sequence]) in tBLASTn?
alignment
BLAST
tBLASTn
updated 9 days ago by
Ram
39k • written 4.2 years ago by
Kumar
▴ 100
3
votes
9
replies
532
views
Estimate sizes of repeats in a especific Gene
CGG
Fragile-X
18 days ago by
Rafael
▴ 10
6
votes
9
replies
958
views
Error when runing Bowtie2: (ERR): bowtie2-align exited with value 1
BAM
Bowtie
updated 24 days ago by
Ram
39k • written 4 months ago by
luzglongoria
▴ 40
1
vote
9
replies
536
views
gene annotation
gtf
gene-annotation
updated 23 days ago by
Ram
39k • written 24 days ago by
ahmad
• 0
1
vote
9
replies
834
views
Couldn't get a file descriptor referring to the console multiqc
multiqc
updated 23 days ago by
Ram
39k • written 11 months ago by
smithkthedale
▴ 10
3
votes
8
replies
1.3k
views
Kallisto mapping paired end
Kallisto
mapping
updated 23 days ago by
Ram
39k • written 15 months ago by
Dk
▴ 20
2
votes
8
replies
2.6k
views
How to convert a database from protein to nucleotide
blastn
unix
blastx
blast
updated 24 days ago by
Ram
39k • written 6.2 years ago by
AJTrunkskun94
• 0
4
votes
8
replies
548
views
Error while running nf-core/rnaseq pipeline
nf-core
RNA-seq
13 days ago by
eesha28112001
• 0
3
votes
8
replies
1.7k
views
What is the minimum system requement for oxford nanopore read assembly
Assembly
updated 10 days ago by
Ram
39k • written 4.6 years ago by
nagendranp1991
• 0
4
votes
8
replies
1.6k
views
How to extract promoter sequences from a plant draft genome?
promoter
genome
updated 2 days ago by
Ram
39k • written 3.7 years ago by
Kumar
▴ 100
1
vote
8
replies
860
views
Betacoronavirus.00.nsq error
corona
biostars
updated 20 days ago by
Ram
39k • written 16 months ago by
Sam
• 0
0
votes
8
replies
332
views
The inchworm process failed. Trinity running error.
inchworm
transcriptome
trinity
updated 3 days ago by
GenoMax
129k • written 4 days ago by
Marta
• 0
1
vote
8
replies
529
views
snpeff install error
snpeff
updated 24 days ago by
Ram
39k • written 5 weeks ago by
bestone
▴ 10
6
votes
7
replies
1.4k
views
Bioinformatics Master Project With More Focus on Developing Algorithm and Software
Masters
Algorithm
Software
updated 23 days ago by
Ram
39k • written 6.0 years ago by
nilo
▴ 90
0
votes
7
replies
2.2k
views
How much time should be expected for building a database by kraken2-build?
kraken2
updated 23 days ago by
Ram
39k • written 2.4 years ago by
thitrucminh.nguyen
• 0
4
votes
7
replies
2.2k
views
low bootstrap value?
phylogeny
genome
alignment
updated 4 days ago by
Ram
39k • written 4.0 years ago by
Kumar
▴ 100
5
votes
7
replies
647
views
Are datasets for a unique cells, that downloded using sratoolkit?
RNA-Seq
sequencing
updated 15 days ago by
supernovamik
• 0 • written 3.4 years ago by
ee.mohseni.alert
▴ 50
1
vote
7
replies
5.6k
views
Human reference files in HG38 GATK resource bundle
VCF
updated 6 days ago by
dare_devil
★ 3.1k • written 5.3 years ago by
win
▴ 940
2
votes
7
replies
1.5k
views
Technology Stack of NCBI (Genbank, GEO, etc.)
sequence
ncbi
gene
genbank
updated 13 days ago by
Ram
39k • written 5.2 years ago by
navela78
▴ 70
0
votes
7
replies
564
views
How to deal with duplicated gene IDs in TCGA RNA expression data?
TCGA
Expression
mRNA
updated 5 days ago by
Vincent Laufer
★ 2.9k • written 9 days ago by
Camilo Andres
▴ 30
5
votes
7
replies
890
views
error while using cyvcf2 to parse the vcf file
cyvcf2
vcf
htslib
updated 23 days ago by
Ram
39k • written 12 months ago by
rheab1230
▴ 140
1
vote
7
replies
898
views
Accuracy of Methods for Gene Variant Detection and Quantification: Kallisto Pseudoalignment vs. STAR Alignment
kallisto
STAR
RNA-seq
Transcript_variants
18 days ago by
sohail.mbio
• 0
3
votes
7
replies
1.1k
views
Find 3'UTRs for species
Assembly
alignment
updated 2 days ago by
Ram
39k • written 3.8 years ago by
Palgrave
▴ 110
7
votes
7
replies
4.4k
views
RNA-Seq time series analysis using a DESeq2 spline approach yields far too many significant genes
splines
DESeq2
time-series
RNA-Seq
updated 5 days ago by
Ram
39k • written 4.4 years ago by
stu111538
▴ 80
3
votes
7
replies
1.6k
views
align_and_estimate_abundance error Trinty
align_and_estimate_abundance
RNA-SEQ
RSEM
Trinity
updated 20 days ago by
Ram
39k • written 20 months ago by
Princy
▴ 60
2
votes
6
replies
1.0k
views
Time series RNA seq design query
RNA-seq
time-series
deseq2
updated 5 days ago by
Ram
39k • written 18 months ago by
kra277
• 0
1
vote
6
replies
779
views
Trimmomatic FileNotFoundException
trimmomatic
updated 23 days ago by
Ram
39k • written 10 months ago by
awhale01
• 0
4
votes
6
replies
743
views
Open-Source software. Good or bad for the market?
genomic-analysis
software
updated 16 days ago by
Ram
39k • written 5.3 years ago by
Bioinformatician90
• 0
4
votes
6
replies
1.5k
views
Why weblogo of biopython doesn't work?
Biopython
Weblogo
updated 3 days ago by
minakshiboruahassam
• 0 • written 9 months ago by
Plus
▴ 20
4
votes
6
replies
438
views
how to plot SV(structural variants) from many assemblies of a given locus
SV
18 days ago by
natalev
▴ 20
3
votes
6
replies
1.8k
views
Biopython TimeExceptionError how to handle?
biopython
entrez
updated 18 days ago by
Ram
39k • written 5.6 years ago by
Xylanaser
▴ 80
3
votes
6
replies
562
views
Convert Nanopore Fast5 files to Fasta format
fast5
fasta
Nanopore
12 days ago by
Sowmya Pulapet
▴ 30
2
votes
6
replies
568
views
how to make a venn plot with data frame in R
plot
R
Venn
14 days ago by
satva72
• 0
0
votes
6
replies
617
views
Getting Error when trying to run hisat2 script! Please help!
hisat2
updated 23 days ago by
Ram
39k • written 11 months ago by
smithkthedale
▴ 10
0
votes
6
replies
555
views
Heatmap error: 'x' must be a numeric matrix
Heatmap
updated 23 days ago by
Ram
39k • written 16 months ago by
adnan.sabar7865
▴ 20
1
vote
6
replies
570
views
DESeq2
heatmap
R
DESeq2
27 days ago by
Nelo
• 0
4
votes
6
replies
539
views
How to pass from DNA to AA fasta
genetics
updated 13 days ago by
Buffo
★ 2.2k • written 16 days ago by
Anderson Stiward
• 0
3
votes
6
replies
1.1k
views
how to get total read count, mapped read count and unmapped read count from multiple sam or bam files
RNAseq
PYTHON
R
bash
updated 19 days ago by
Ram
39k • written 2.7 years ago by
Bioinfonext
▴ 430
0
votes
6
replies
340
views
Demultiplexing bam file
demultiplexing
bam_file
Iontorrent
6 days ago by
hasani.iut6
▴ 60
6
votes
6
replies
2.7k
views
ChIP-Seq Intensity Analysis
R
ChIP-Seq
updated 18 days ago by
Ram
39k • written 5.5 years ago by
solveforj
▴ 20
0
votes
6
replies
653
views
Comparative transcriptomics
rna-seq
comparative
transcriptomics
updated 17 days ago by
Vincent Laufer
★ 2.9k • written 12 months ago by
edus_bioinfo
▴ 20
2
votes
6
replies
380
views
Find data-based Gene_IDs for unknown gene_IDs in gtf.file
RNA-SEQ
annotation
GO-term
14 days ago by
Pegasus
▴ 90
0
votes
6
replies
1.0k
views
How do I tell piRNA population suppress TEs in a bed file?
mapping
piRNAs
TEs
updated 11 days ago by
Ram
39k • written 4.8 years ago by
jaqx008
▴ 110
539 results • Page
1 of 11
Recent Votes
Answer: How To Predict Pseudogenes In A Genome
A: How To Predict Pseudogenes In A Genome
A: How To Predict Pseudogenes In A Genome
A: How To Predict Pseudogenes In A Genome
How To Predict Pseudogenes In A Genome
C: parsing fasta file
SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
Recent Locations •
All
France,
just now
Oxford, UK,
2 minutes ago
University Park, USA,
2 minutes ago
Latent Space,
2 minutes ago
United States,
3 minutes ago
United States,
3 minutes ago
Italy,
3 minutes ago
Recent Awards •
All
Teacher
to
antonioggsousa
2.8k
Teacher
to
Kevin Blighe
85k
Popular Question
to
bioinfo_ga
▴ 50
Popular Question
to
english.server
▴ 290
Teacher
to
Pierre Lindenbaum
154k
Voter
to
pilargmarch
▴ 100
Popular Question
to
anna
▴ 10
Recent Replies
Comment: How to calculate TPM from featureCounts output
by
rpolicastro
12k
If you want to go that route, yes.
Comment: Difference between USCS exon coordinates and ensembl
by
ATpoint
72k
What did you download from UCSC? 1-off usually means one file is zero-based and the other 1-based. BED files from UCSC are 0-based, Ensembl…
Comment: Alignment of case vs. control from different origin
by
sativus
• 0
Thank you kindly for the explanation, it is highly appreciated. I suppose i was a bit confused as you quite often see people validating the…
Answer: Gene enrichment analysis
by
nux
▴ 10
Hello. For this you have to select 'hyper' as your method and then provide a complete list of genes which both include the candidate and no…
Comment: CNNScoreVariants Error
by
bestone
▴ 10
Thank you for replying I updated it worked but it gives another Error A USER ERROR has occurred: Invalid argument ' -V'.
Comment: Impute haplotypes (ImputePipelinePlugin) execution error - PHG
by
jrodrigu
• 0
Thank you so much. I made the suggested changes. However, I still have the same problem. Please check the new log file. https://github.c…
Comment: Getting same value for start and end position, "DNA methylation"
by
ATpoint
72k
That's a comment, not an answer, please use `ADD COMMENT`.
Comment: Getting same value for start and end position, "DNA methylation"
by
bioinfo_ga
▴ 50
Are you working on bisulphite kind of data or chipseq ????
Answer: How to calculate TPM from featureCounts output
by
bioinfo_ga
▴ 50
hi , You can use a python package rnanorm [https://pypi.org/project/rnanorm/]. The input required are your read count values from feature …
Comment: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by
by
biofalconch
▴ 580
Hey, if you arelady have the barcodes, you could use samtools `samtools view -h -b -f CB:Z:TAAGAGATCCTATGTT > TAAGAGATCCTATGTT.bam` Hope…
Answer: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by
by
biofalconch
▴ 580
Here is a code that should work, but just like everyone else in the comments I'm a little confused why would you need to separate them: …
Comment: Make a BedGraph file
by
kirillkirilenko
▴ 10
It works, thank you!
Comment: CNNScoreVariants Error
by
Pierre Lindenbaum
154k
check you have a complete environment for GATK , including the python module "keras". https://gatk.broadinstitute.org/hc/en-us/articles/360…
Comment: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by
by
Cathal
• 0
Did you have any luck in splitting the BAM file based on the 10x cell barcode? I would like to split a BAM file based to only include 5 spe…
Answer: Getting same value for start and end position, "DNA methylation"
by
ATpoint
72k
genomation is based on GenomicRanges which uses 1-based coordinates. https://www.biostars.org/p/84686/ Since a single CpG has a length o…
Traffic: 2398 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6