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514 results • Page
2 of 11
Sort: replies
Rank
Views
Votes
Replies
0
votes
5
replies
2.8k
views
Graph using corrplot for multiple sets of data
R
updated 2 days ago by
Ram
37k • written 7.7 years ago by
rvsaras86
• 0
2
votes
5
replies
669
views
comparative transcriptome - how to normalize and analyze DEGs?
RNA-Seq
rna-seq
R
updated 16 days ago by
Lada
▴ 10 • written 2.5 years ago by
nadal-t
▴ 20
1
vote
5
replies
527
views
gene ontology of a certain gene names
R
updated 26 days ago by
barslmn
★ 1.2k • written 4 weeks ago by
Bioinfo
• 0
0
votes
5
replies
4.3k
views
Error during Trinity running with the recent version?
Assembly
next-gen
RNA-Seq
updated 1 day ago by
Ram
37k • written 7.7 years ago by
seta
★ 1.7k
0
votes
5
replies
558
views
Create phylogenetic tree of 144 species
phylogenetic-tree
updated 2 days ago by
Ram
37k • written 5 weeks ago by
anasjamshed1994
▴ 120
1
vote
5
replies
329
views
convert tsv file to VCF
CADD
vcf
updated 15 days ago by
barslmn
★ 1.2k • written 16 days ago by
Eliza
▴ 10
0
votes
5
replies
2.5k
views
Haplotype phasing and imputation in Beagle 5.1
haplotype-phasing
imputation
Beagle
rehh
updated 19 days ago by
barslmn
★ 1.2k • written 3.3 years ago by
kas
• 0
0
votes
5
replies
398
views
HTSeq error processing GFF file
HTSeq
GFF
GTF
updated 22 hours ago by
barslmn
★ 1.2k • written 2 days ago by
ibq.enriquepola
• 0
0
votes
4
replies
393
views
Does non-Mendelian equal to mutation?
mutation
genetics
Mendelian
gene
22 days ago by
solarchan7
• 0
4
votes
4
replies
746
views
Analysis of Nanopore cDNA sequencing data
alignment
nanopore
sequencing
minimap2
8 days ago by
Nico80
▴ 60
0
votes
4
replies
257
views
vector memory exhausted (limit reached?)
escape
seurat
scGSEA
Rstudio.
9 days ago by
50cf32b2
• 0
0
votes
4
replies
10k
views
Convert .gbf file to .gbk or .gff
gbk
gff
gbf
updated 16 days ago by
Ram
37k • written 7.7 years ago by
che.bellaj
• 0
2
votes
4
replies
368
views
Change sample ID in BAM file to cell barcode
bam
samtools
barcode
scrna
12 days ago by
martin.grasshoff
• 0
3
votes
4
replies
404
views
Changing Temporary File Location for Local BLASTP to nr Database
temporary
blast
file
protein
nr
17 days ago by
katieostrouchov
▴ 20
0
votes
4
replies
313
views
How to call somatic mutations from vcf files
cancer
vcf
bcf
bam
gene
updated 12 days ago by
Pierre Lindenbaum
152k • written 13 days ago by
DS
▴ 20
0
votes
4
replies
482
views
I want to merge gene sequences in fasta to create one genome from all cds region.
file
manipulation
fasta
genome
linux
24 days ago by
iankeetkumar
• 0
2
votes
4
replies
216
views
Calculate sequencing file size?
storage
data
sequencing
plan
management
updated 9 days ago by
GenoMax
125k • written 9 days ago by
Lluís R.
★ 1.2k
0
votes
4
replies
3.8k
views
problem in installing zlibbioc library
R
updated 25 days ago by
Ram
37k • written 7.7 years ago by
m_punisher6
• 0
0
votes
4
replies
436
views
how to deal with missing genotype data (gt) to do a machine learning
missing_data
updated 26 days ago by
German.M.Demidov
★ 2.9k • written 27 days ago by
arwa.ahmad95
• 0
0
votes
4
replies
1.4k
views
Automate protein family analysis
protein-family
updated 26 days ago by
Ram
37k • written 7.7 years ago by
biotech
▴ 560
0
votes
4
replies
731
views
Batch effect correction & normalization after training/test split for gene expression data
RNA-seq
normalization
batcheffect
single_cell_features
training_test_split
updated 6 days ago by
madbadradscientist
▴ 20 • written 6 months ago by
mmitra
▴ 40
0
votes
4
replies
280
views
Running command in docker container results in directly shutting down the docker container
docker-container
python
ubuntu
docker
8 days ago by
stan.aanhane
▴ 30
1
vote
4
replies
439
views
Custom made gff in geneious software - format conversion
format
Geneious
gff
18 days ago by
L_bioinfo
• 0
0
votes
4
replies
433
views
Error in DNAmAge package in r
methylation
DNAmAge
17 days ago by
andrechristianes
• 0
2
votes
4
replies
278
views
Retrieve specific fasta sequences from a group of assemblies
CDS
gene
sequence
5 days ago by
SushiRoll
▴ 100
0
votes
4
replies
278
views
Help converting .CYCHP to .txt or .csv or .vcf
cychp
2 days ago by
Sarah
• 0
0
votes
4
replies
2.6k
views
biomaRt: Extracting data for a particular isoform (R/bioconductor)
bioconductor
utr
biomart
updated 11 days ago by
Ram
37k • written 7.7 years ago by
bsmith030465
▴ 210
2
votes
4
replies
342
views
Differences between genomic position and genomic loci?
loci
dna
genome
genetics
gene
26 days ago by
DS
▴ 20
0
votes
4
replies
672
views
dbSNP and indels
VCF
5 days ago by
wonde2000
• 0
1
vote
4
replies
3.9k
views
design primer for alternative splicing events
alternative-splicing
primer-design
RNA-Seq
updated 15 days ago by
Ram
37k • written 7.7 years ago by
pengchy
▴ 450
3
votes
4
replies
483
views
Snakemake not executing any tasks
python
readqc
Snakemake
cutadapt
updated 28 days ago by
Jesse
▴ 450 • written 4 weeks ago by
jaime.alvarez.benayas
▴ 20
3
votes
4
replies
325
views
Renaming fasta headers based on a list
fasta
updated 22 days ago by
Ram
37k • written 23 days ago by
Bertrand
• 0
1
vote
4
replies
3.4k
views
BWA MEM alignment output of splited fastq files differ from the original(unsplit) fastq file
next-gen
alignment
updated 29 days ago by
Ram
37k • written 7.7 years ago by
manojkumar_bhosale
▴ 70
1
vote
4
replies
194
views
trying to look the version of the programs under miniconda3 directory
miniconda3
versions
updated 9 days ago by
ATpoint
68k • written 9 days ago by
v.berriosfarias
▴ 90
7
votes
4
replies
1.3k
views
microarray gene datasets
gene
updated 2 days ago by
Ram
37k • written 7.7 years ago by
bioinfo
▴ 60
0
votes
4
replies
485
views
how to perform gene ontology on genomic data?
GO
24 days ago by
Neel
▴ 10
3
votes
4
replies
483
views
R package DESeq2 in R 3.5.1
packages
installing
error
R
26 days ago by
sehriban.buyukkilic
• 0
1
vote
4
replies
456
views
Stringtie issue. "Error: no valid ID found for GFF record"
Stringtie
RNA-seq
updated 23 days ago by
GenoMax
125k • written 24 days ago by
Pegasus
▴ 40
1
vote
4
replies
3.0k
views
unplaced, unlocalized, ... scaffolds from hg19 to GRCh38
Assembly
updated 3 days ago by
ED
• 0 • written 7.1 years ago by
tabone.olivier
▴ 10
3
votes
4
replies
1.5k
views
getting reference genome accession number
RNA-Seq
updated 3 days ago by
Ram
37k • written 7.7 years ago by
fi1d18
★ 4.1k
1
vote
3
replies
223
views
Strand-specific in HT-Seq
HT-Seq
Strand-specific
4 days ago by
ibq.enriquepola
• 0
0
votes
3
replies
469
views
Merging compressed fastq files based on a conditions defined in a csv file
bash
linux
updated 2 days ago by
Ram
37k • written 12 months ago by
D
• 0
0
votes
3
replies
192
views
Error while using rpy2
R
rpy2
Python
updated 3 days ago by
Wayne
★ 1.6k • written 5 days ago by
sidrah.maryam
▴ 40
0
votes
3
replies
237
views
How long does it take to apply for the academic license of Schrodinger Desmond?
Desmond
Schrodinger
updated 16 days ago by
GenoMax
125k • written 16 days ago by
Peal Wl
• 0
2
votes
3
replies
303
views
SALMON Index build Process Killed!
salmon
index
mapping
10 days ago by
Soumajit
▴ 30
0
votes
3
replies
276
views
biological vs. technical definition of "insert size"
grinder
simulated-reads
shotgun-sequencing
updated 2 days ago by
ATpoint
68k • written 3 days ago by
sovrappensiero
▴ 50
1
vote
3
replies
453
views
Concepts reg Zygosity, copy number variant and variation
number
zygosity
copy
variation
updated 23 days ago by
Mark
★ 1.2k • written 3 months ago by
its.roops
• 0
0
votes
3
replies
2.6k
views
ReadVCF not reading samples
readVcf
VariantAnnotation
R
updated 25 days ago by
Ram
37k • written 7.7 years ago by
Alexander Skates
▴ 370
1
vote
3
replies
336
views
Combine different functional annotations
functional-annotation
updated 17 days ago by
Juke34
7.5k • written 23 days ago by
ahmadjoyyia
▴ 10
0
votes
3
replies
344
views
Why genetic PCA method isn't applied in fungi or algae genomic study?
PCA
whole
genome
fungi
sequence
updated 19 days ago by
Jeremy Leipzig
21k • written 20 days ago by
kgwkk2
• 0
514 results • Page
2 of 11
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Deseq2 with one factor and multiple levels
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1000 genomes project reference panel - GRCh38
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Comment: Network analysis for two Factors
by
seidel
10k
Have you looked at any tutorials? Three are many out there. ([1][1], [2][2], [3][3], [etc.][4]) Do you have a preferred language? [1]: …
Comment: ceres score in crispr screen
by
seidel
10k
Are you looking for moral support or technical support? Have you tried using it with an older version of R and bioconductor? (i.e. circa 20…
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
If you aren't willing to provide more precise information than this, sufficient for a reader to reproduce what you're seeing, I will delete…
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Donwloading the package from conda (https://anaconda.org/conda-forge/boost/files?version=1.60.0) worked for me wget https://anaconda.org/…
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First issue is that GEO series matrix files can't be read using `read.delim`. Second issue is the data are from Agilent microarrays and …
Comment: PLINK2 selecting variants based on INFO score
by
m.c.roozen
• 0
I have tried that (the .pvar file contains the "1:10586" form as ID which I mentioned above) which leads to the same output as above, 0 var…
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by
joe
▴ 350
You can run any system command from inside R using `system()`. This works well if there is a single command without many dependencies. For …
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152k
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Answer: samtools markdup in Rsamtools
by
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68k
My honest opinion: Do processing of sequencing data on the standard command line with samtools. There is no need for the added complexity t…
Comment: To batch correct or analyse separately?
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predeus
★ 1.8k
Another great and up-to-date resource is this: https://www.sc-best-practices.org/preamble.html
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
The --exclude file must use the same variant IDs as your .pvar file. You should elaborate on what seemed to go wrong when you tried to arr…
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• 0
Hello, my problem is the same as yours, did you finally solve this problem?
Comment: phylogeny
by
炫
• 0
您好,我的问题和您的一模一样,请问您这个问题最终解决了吗
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by
apcreyes29
• 0
If that's the case then I'll just proceed then. Thank you!
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68k
Instead of writing that all down I recommend to read the relevant part of the Bioconductor scRNA-seq book (OSCA) which covers the "how's" a…
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