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464 results • Page
1 of 10
Sort: Votes
Rank
Views
Votes
Replies
9
votes
4
replies
5.2k
views
How to analyse normalized read count?
RNA-Seq
R
updated 27 days ago by
Ram
37k • written 7.7 years ago by
pbio
▴ 150
9
votes
7
replies
711
views
Reference genome location
reference
positions
FASTA
alignment
genome
updated 26 days ago by
barslmn
★ 1.2k • written 4 weeks ago by
Batel
• 0
7
votes
2
replies
3.1k
views
Counting reads for gene transcripts with overlapping loci
RNA-Seq
gene
R
updated 26 days ago by
Ram
37k • written 7.7 years ago by
Ruet
▴ 70
6
votes
2
replies
2.2k
views
Which is the best smoothing technique for replacing zeros from data?
Smoothing
updated 27 days ago by
Ram
37k • written 7.7 years ago by
Deepak Tanwar
★ 4.2k
5
votes
2
replies
455
views
how to loop through various dataframes in R
dataframe
R
updated 27 days ago by
zx8754
11k • written 4 weeks ago by
rheab1230
▴ 120
5
votes
2
replies
304
views
30 bp sequence that does not show hit within a genome
similarity
updated 25 days ago by
shenwei356
7.8k • written 25 days ago by
RT
▴ 370
5
votes
2
replies
2.2k
views
Cut & run - bowtie2 dovetail option
cut and run
dovetail
bowtie2
updated 10 hours ago by
baijiangshan9726
• 0 • written 2.3 years ago by
blur
▴ 270
5
votes
4
replies
3.4k
views
Black color reads in IGV: bwa-meth
IGV
alignment
bwa-meth
updated 26 days ago by
Ram
37k • written 7.7 years ago by
mehran.karimzade
▴ 220
5
votes
13
replies
530
views
How to Calulate Allele Frequency from a VCF File?
frequency
allele
VCF
1 day ago by
Emoji
• 0
4
votes
2
replies
2.1k
views
dbFetch from EBI with bogus accession number returns valid record
EBI
dbFetch
updated 24 days ago by
Ram
37k • written 7.7 years ago by
Jeroen Van Goey
2.3k
4
votes
2
replies
2.3k
views
Signal Distribution Charts
ChIP-Seq
next-gen
R
updated 6 days ago by
Ram
37k • written 7.7 years ago by
John
13k
4
votes
8
replies
1.9k
views
Select only sequences that align with X% of a query during blastp search
sequence
blast
alignment
updated 6 days ago by
Ram
37k • written 7.7 years ago by
dago
★ 2.7k
4
votes
3
replies
361
views
HaplotypeCaller: GVCF-Mode or VCF for variant calling of single sample?
haplotypecaller
vcf
gatk
gvcf
26 days ago by
DavidStreid
▴ 70
4
votes
6
replies
758
views
Differentially gene expression multispecies
Expression
Multispecies
Rnaseq
differentially
updated 10 days ago by
Lada
▴ 10 • written 18 months ago by
tiagobellintani
▴ 40
4
votes
4
replies
716
views
Analysis of Nanopore cDNA sequencing data
alignment
nanopore
sequencing
minimap2
3 days ago by
Nico80
▴ 60
4
votes
10
replies
3.5k
views
TCGA normalized count data of 1000 samples for DGE
RNA-Seq
TCGA
updated 6 days ago by
Ram
37k • written 7.7 years ago by
David_emir
▴ 460
4
votes
8
replies
678
views
Proteomic Statistics - FDR vs p-value
FDR
proteomics
t-test
p-value
13 days ago by
bhumm
▴ 10
4
votes
5
replies
222
views
Error when runing Bowtie2: (ERR): bowtie2-align exited with value 1
error
BAM
Bowtie
updated 3 days ago by
GenoMax
125k • written 4 days ago by
luzglongoria
▴ 40
3
votes
1
reply
169
views
RNA seq analysis from the data file which received from company
RNA
editing
updated 6 days ago by
4galaxy77
2.6k • written 6 days ago by
Genetics
• 0
3
votes
1
reply
186
views
LMM GWAS - why are population covariates included?
LMM
GWAS
population-covariates
updated 25 days ago by
Ram
37k • written 25 days ago by
ucbtaep
▴ 20
3
votes
2
replies
2.4k
views
Creating neo4j graph databases from UCSC tables browser
neo4j
graph-database
updated 11 days ago by
Ram
37k • written 7.7 years ago by
John
13k
3
votes
4
replies
462
views
R package DESeq2 in R 3.5.1
packages
installing
error
R
21 days ago by
sehriban.buyukkilic
• 0
3
votes
4
replies
457
views
Snakemake not executing any tasks
python
readqc
Snakemake
cutadapt
updated 23 days ago by
Jesse
▴ 450 • written 25 days ago by
jaime.alvarez.benayas
▴ 20
3
votes
3
replies
2.6k
views
Breast cancer TCGA data - DGE analysis
RNA-Seq
Voom
Raw_Count
TCGA
updated 10 days ago by
Ram
37k • written 7.7 years ago by
David_emir
▴ 460
3
votes
4
replies
292
views
Renaming fasta headers based on a list
fasta
updated 17 days ago by
Ram
37k • written 18 days ago by
Bertrand
• 0
3
votes
6
replies
535
views
SV calling using giraffe/vg
vg
Giraffe
calling
structural
variant
8 days ago by
TN
• 0
3
votes
3
replies
413
views
GO analysis: Different results EnrichGO vs ShinyGO
enrichGO
GO
RNA-seq
shinyGO
analysis
updated 19 days ago by
Jean-Karim Heriche
26k • written 21 days ago by
Clément
▴ 10
3
votes
6
replies
2.0k
views
snpEff suitable for Bathycoccus prasinos?
protist
non-human
SNP
annotation
updated 7 hours ago by
Ram
37k • written 7.7 years ago by
nathalie.joli
▴ 10
3
votes
4
replies
371
views
Changing Temporary File Location for Local BLASTP to nr Database
temporary
blast
file
protein
nr
12 days ago by
katieostrouchov
▴ 20
3
votes
5
replies
6.2k
views
Converting Vcftools output to R readable format
vcf
SNP
R
vcftools
updated 7 days ago by
Ram
37k • written 7.7 years ago by
pifferdavide
▴ 100
3
votes
7
replies
1.9k
views
problem with genome viewer IGV
IGV
mapping
BAM
updated 25 days ago by
GenoMax
125k • written 4.6 years ago by
StudentBio
• 0
2
votes
2
replies
398
views
Gene coverage plots from a data frame on tiling amplicon sequencing data
visualization
coverage
sequencing
plots
R
22 days ago by
pramach1
▴ 30
2
votes
3
replies
716
views
Merging FASTQs from the same sample
Merging
FASTQ
cellranger
scRNAseq
10X
updated 1 day ago by
Angelina_G
• 0 • written 13 months ago by
adellegreene
• 0
2
votes
3
replies
283
views
SALMON Index build Process Killed!
salmon
index
mapping
5 days ago by
Soumajit
▴ 30
2
votes
3
replies
331
views
Creating Gene ID and Gene name colum from FASTA IDs
programming
r
data
FASTA
updated 11 days ago by
barslmn
★ 1.2k • written 11 days ago by
WUSCHEL
▴ 660
2
votes
1
reply
1.6k
views
smallRNA-seq, but have files R1/R1fastq?
fastq
smallRNAs
single-end
updated 10 days ago by
Ram
37k • written 7.7 years ago by
manekineko
▴ 150
2
votes
1
reply
2.2k
views
A snp caller from a multiple alignment using python/biopython
alignment
SNP
sequence
updated 24 days ago by
Ram
37k • written 7.7 years ago by
cnyaigoti
• 0
2
votes
1
reply
271
views
Translate HGVS annotation from one transcript to the MANE-select transcript using VEP
annotation
updated 28 days ago by
Ram
37k • written 28 days ago by
genomics2023
• 0
2
votes
6
replies
379
views
Removing individuals and plotting Allele Frequency Difference plots from a vcf file
vcf
updated 12 days ago by
Pierre Lindenbaum
152k • written 12 days ago by
Ollie
• 0
2
votes
2
replies
3.0k
views
Does RPKM value of TCGA data need to be normalized by reference gene?
RNA-Seq
updated 25 days ago by
Ram
37k • written 7.7 years ago by
donglei2014
▴ 10
2
votes
4
replies
185
views
Calculate sequencing file size?
storage
data
sequencing
plan
management
updated 4 days ago by
GenoMax
125k • written 4 days ago by
Lluís R.
★ 1.2k
2
votes
1
reply
192
views
Ancestral sequence reconstruction at each node of a gene tree
tree
reconstruction
ancestral
gene
updated 7 days ago by
Jesse
▴ 450 • written 12 days ago by
biomonte
▴ 210
2
votes
3
replies
2.9k
views
how to import a 1000 genome project vcf file (chromosome file) into a mysql database
vcf
mysql
1000genome
updated 21 days ago by
Ram
37k • written 7.7 years ago by
pinikoma
• 0
2
votes
1
reply
1.2k
views
pair wise differences of different populations
snp
updated 6 days ago by
Ram
37k • written 7.7 years ago by
drshahzadbhatti
• 0
2
votes
5
replies
2.8k
views
QuasiSeq vs. DESeq2 results
deseq2
normalisation
quasiseq
erccdashboard
updated 25 days ago by
Ram
37k • written 7.7 years ago by
Assa Yeroslaviz
★ 1.8k
2
votes
3
replies
492
views
Combining single-end and paired end reads
differential
meta-analysis
analysis
expression
26 days ago by
shri.au
• 0
2
votes
4
replies
336
views
Change sample ID in BAM file to cell barcode
bam
samtools
barcode
scrna
7 days ago by
martin.grasshoff
• 0
2
votes
1
reply
167
views
MACS2 peak caller omitting large chunks of peaks
peak-calling
ATAC-seq
MACS2
updated 24 days ago by
Ram
37k • written 11 weeks ago by
Nevergivingup
• 0
2
votes
6
replies
416
views
Predicting protein fold using known stracture
protein
modeller
prediction
3D
updated 19 days ago by
Michael Dondrup
52k • written 19 days ago by
blur
▴ 270
2
votes
1
reply
238
views
bgzip error 4
bgzip
error4
vcf
updated 2 days ago by
Pierre Lindenbaum
152k • written 3 days ago by
yb
▴ 10
464 results • Page
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