0
votes
0
replies
197
views
0
votes
0
replies
170
views
4 days ago by
DanielEB_fisk
▴
20
0
votes
1
reply
271
views
0
votes
0
replies
190
views
updated 4 days ago by
Ram
43k
•
written 4 days ago by
Dinmukhamed
•
0
0
votes
0
replies
188
views
0
votes
0
replies
196
views
updated 4 days ago by
Ram
43k
•
written 4 days ago by
atharvakarkare14
▴
10
3
votes
3
replies
452
views
0
votes
2
replies
525
views
0
votes
0
replies
207
views
updated 4 days ago by
GenoMax
141k
•
written 4 days ago by
N.Y.Wiyana-Hewage
•
0
0
votes
2
replies
362
views
4 days ago by
Ashok
•
0
0
votes
2
replies
403
views
4 days ago by
Ashok
•
0
0
votes
0
replies
207
views
updated 5 days ago by
Ram
43k
•
written 5 days ago by
samuelkalandarov2002
▴
10
0
votes
2
replies
413
views
4 days ago by
_quantum_girl_
▴
10
0
votes
0
replies
197
views
0
votes
0
replies
172
views
5 days ago by
enferdeflame
•
0
1
vote
1
reply
402
views
updated 2 days ago by
Gordon Smyth
★
7.0k
•
written 5 days ago by
Chris
▴
260
0
votes
1
reply
397
views
0
votes
0
replies
155
views
updated 5 days ago by
Ram
43k
•
written 5 days ago by
bioinfo223
▴
10
0
votes
0
replies
170
views
5 days ago by
P.
•
0
0
votes
0
replies
163
views
1
vote
1
reply
372
views
0
votes
0
replies
166
views
0
votes
1
reply
259
views
0
votes
4
replies
567
views
1
vote
1
reply
218
views
updated 5 days ago by
Ram
43k
•
written 5 days ago by
jammydodger123456
▴
40
0
votes
2
replies
361
views
5 days ago by
22211020193
•
0
0
votes
0
replies
161
views
1
vote
2
replies
264
views
updated 5 days ago by
Ram
43k
•
written 6 days ago by
aniigodwinn
•
0
0
votes
0
replies
349
views
2
votes
7
replies
794
views
updated 4 days ago by
joe
▴
510
•
written 6 days ago by
quentinperriere
•
0
0
votes
1
reply
191
views
updated 6 days ago by
DKA
▴
40
•
written 6 days ago by
james.melhorn
•
0
0
votes
1
reply
177
views
0
votes
0
replies
152
views
6 days ago by
chemokine-1
▴
10
0
votes
4
replies
486
views
5 days ago by
feather-W
•
0
0
votes
2
replies
209
views
0
votes
0
replies
164
views
6 days ago by
Ali
•
0
2
votes
4
replies
303
views
6 days ago by
kirill.zaslavsky
•
0
0
votes
2
replies
235
views
0
votes
0
replies
138
views
0
votes
0
replies
127
views
0
votes
0
replies
150
views
1
vote
1
reply
170
views
0
votes
0
replies
136
views
7 days ago by
solomoncharles77
▴
90
0
votes
2
replies
300
views
5 days ago by
Sudip
•
0
0
votes
0
replies
119
views
2
votes
5
replies
418
views
0
votes
2
replies
249
views
1
vote
2
replies
258
views
0
votes
1
reply
184
views
0
votes
1
reply
199
views
updated 7 days ago by
Ram
43k
•
written 7 days ago by
michelle.swarovski
•
0
Recent Locations •
All
Portugal, just now
United States, 1 minute ago
Berlin, 2 minutes ago
EMBL-EBI, 4 minutes ago
UK, 6 minutes ago
France, 8 minutes ago
United States, 10 minutes ago
Recent Awards •
All
Popular Question to
Kash
▴
110
Popular Question to
pfee418
▴
10
Popular Question to
sarahmanderni
▴
100
Popular Question to
Michael
54k
Popular Question to
michael.flower.14
▴
180
Recent Replies
Comment: Subset Seurat object from Xenium spatial data
by
bk11
★
2.3k
For subsetting a sample, you can do something like this-
Idents(seuratObj) <- "orig.ident"
subj1 <- c("subject_1")
subj1_seur…
Comment: Redirection of Duplicate PMIDs
by
LauferVA
4.2k
Ok! I have a recommendation. I'll submit it as an answer, pending your feedback.
vincent
Comment: DYH17 Structure Prediction
by
anasjamshed
▴
120
In modeller we need to use templates as well.so 63% is acceptable
Comment: DYH17 Structure Prediction
by
Ram
43k
Mensur said
> The latter option assumes you know how to use Modeller
Do you know how to use Modeller? I vaguely recall there being a mini…
Comment: Should I remove unlocalized scaffols in reference genome before alignment?
by
GenoMax
141k
OP is working with long reads so the chances of reads aligning to unlocalized scaffolds are relatively small. Doing some testing may be suf…
Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
by
ATpoint
81k
I personally think that comparing the same peak between conditions is meaningful and comparing peaks within the same sample is not.
Comment: Should I remove unlocalized scaffols in reference genome before alignment?
by
ATpoint
81k
These regions are present in the genome and removing them might incorrectly redirect alignments to known genes. I don't see why you would r…
Comment: Should I remove unlocalized scaffols in reference genome before alignment?
by
njornet
▴
20
Ok thank you! Do you know if there is an easy way of doing so with ncbi-genome-download or I need to use another tool?
Comment: Using vg gamsort with naive sorting algorithm
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Redirection of Duplicate PMIDs
by
dominickd
•
0
The scope is all publications related to grants from an NIH award program. There are currently ~120k publications in total (about a few hun…
Answer: Using vg gamsort with naive sorting algorithm
by
anovak
▴
120
The `-d` sorting mode does the entire sort in memory, so it will only work if you have enough memory to load your whole GAM file.
To fin…
Comment: Redirection of Duplicate PMIDs
by
dominickd
•
0
I have a list of PMIDs for publications linked to a list of grants, exported from NIH RePORTER.
Comment: Plot DNA methylation level of DMR on the basis of certain genes
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Should I remove unlocalized scaffols in reference genome before alignment?
by
GenoMax
141k
Yes you can remove those if you are only interested in annotated genes.
Comment: Help for coding: Trinity for differential gene expression studies
by
mchour
•
0
[This could help][1]
[1]: https://github.com/trinityrnaseq/RNASeq_Trinity_Tuxedo_Workshop/wiki/Trinity-De-novo-Transcriptome-Assembly-W…
Traffic: 3404 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6