1
vote
2
replies
417
views
0
votes
2
replies
278
views
1
vote
2
replies
255
views
5 days ago by
mel22
▴
100
0
votes
2
replies
205
views
updated 17 days ago by
Ram
40k
•
written 17 days ago by
hashim.rana11
▴
20
0
votes
2
replies
266
views
updated 12 days ago by
Ram
40k
•
written 13 days ago by
Lakritz the LabRat
•
0
0
votes
2
replies
1.5k
views
updated 7 days ago by
Ethan Lee
•
0
•
written 4.1 years ago by
tujuchuanli
▴
100
0
votes
2
replies
216
views
0
votes
2
replies
1.9k
views
updated 11 days ago by
Ram
40k
•
written 6.5 years ago by
akashmdr90
•
0
1
vote
2
replies
220
views
updated 12 days ago by
GenoMax
134k
•
written 12 days ago by
Charles Plessy
★
2.9k
0
votes
2
replies
282
views
0
votes
2
replies
244
views
27 days ago by
dthorbur
▴
550
0
votes
2
replies
249
views
0
votes
2
replies
287
views
0
votes
2
replies
305
views
updated 29 days ago by
Ben_Ensembl
★
2.3k
•
written 4 weeks ago by
Heiha
•
0
0
votes
2
replies
678
views
0
votes
2
replies
248
views
8 days ago by
dbagmerve
•
0
0
votes
2
replies
548
views
0
votes
2
replies
230
views
11 days ago by
DdogBoss
•
0
1
vote
2
replies
292
views
14 days ago by
halimaakhter014
•
0
0
votes
2
replies
236
views
15 days ago by
gallardodiazmiriam
▴
20
0
votes
2
replies
329
views
1
vote
2
replies
278
views
23 days ago by
Jonathan Yoou
▴
60
0
votes
2
replies
221
views
11 days ago by
O.rka
▴
680
0
votes
2
replies
373
views
updated 8 days ago by
Ram
40k
•
written 11 months ago by
adeizadavid
▴
10
2
votes
2
replies
343
views
updated 18 days ago by
ATpoint
76k
•
written 18 days ago by
nyxtoviopouli
•
0
1
vote
2
replies
212
views
2
votes
2
replies
253
views
5 days ago by
kirankumareripogu
▴
10
0
votes
2
replies
240
views
15 days ago by
Mousumi Akter
•
0
0
votes
2
replies
180
views
0
votes
1
reply
166
views
updated 23 days ago by
Juke34
8.2k
•
written 23 days ago by
1300189805
•
0
0
votes
1
reply
168
views
0
votes
1
reply
104
views
1
vote
1
reply
236
views
updated 8 days ago by
Ram
40k
•
written 8 days ago by
oduduabasi.isaiah
•
0
0
votes
1
reply
173
views
updated 11 days ago by
Mensur Dlakic
★
24k
•
written 11 days ago by
synat.keam
▴
80
0
votes
1
reply
229
views
0
votes
1
reply
193
views
0
votes
1
reply
1.0k
views
updated 7 days ago by
Ram
40k
•
written 2.8 years ago by
NGSCanBioinf
▴
10
0
votes
1
reply
1.4k
views
1
vote
1
reply
200
views
updated 24 days ago by
rfran010
▴
790
•
written 24 days ago by
Biomed-jeh
•
0
0
votes
1
reply
140
views
0
votes
1
reply
308
views
updated 9 days ago by
Ram
40k
•
written 5 weeks ago by
ananta.kapoor
•
0
0
votes
1
reply
67
views
updated 30 minutes ago by
GenoMax
134k
•
written 12 hours ago by
shakyaram079
•
0
0
votes
1
reply
265
views
0
votes
1
reply
215
views
0
votes
1
reply
180
views
updated 16 days ago by
Ram
40k
•
written 16 days ago by
shamila.ismael
•
0
0
votes
1
reply
174
views
0
votes
1
reply
168
views
updated 3 days ago by
Jordan M Eizenga
▴
360
•
written 4 days ago by
cfourps
▴
10
0
votes
1
reply
898
views
0
votes
1
reply
220
views
updated 26 days ago by
Ram
40k
•
written 27 days ago by
khaldari.i
•
0
1
vote
1
reply
476
views
updated 12 days ago by
angelika_95
•
0
•
written 24 months ago by
jdru
▴
10
Recent Votes
Recent Locations •
All
Paris, just now
Cambridge, MA, 1 minute ago
United States, 3 minutes ago
India, 4 minutes ago
Russia, 5 minutes ago
Oviedo, 6 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 6 minutes ago
Recent Awards •
All
Popular Question to
langziv
▴
50
Popular Question to
Emily
▴
30
Popular Question to
Bogdan
★
1.4k
Popular Question to
paria
▴
70
Popular Question to
Ahmed.waraky
▴
10
Scholar to
antonioggsousa
2.8k
Recent Replies
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti
by
Y
•
0
I tried the commands you recommended in the bash/command line. When I tried `find "${bam_directory}" -type f -name "*.bam" | xargs samtools…
Comment: Hugo_Symbol to Entrez ID
by
GenoMax
134k
Can you provide some examples of HUGO ID's you are unable to convert?
Comment: Using STAR aligner to build index of hg38
by
GenoMax
134k
GTF file includes gene models/annotation information.
You could also use a program like `salmon/kallisto` with just human transcriptome to…
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti
by
Pierre Lindenbaum
157k
then test each files.
find "${bam_directory}" -type f -name "*.bam" | xargs samtools quickcheck
file "${reference_gen…
Answer: Ties in reranked list
by
alserg
▴
840
The problem here is not the ties, but that your gene IDs in the pathway list (ensemble human genes) does not match the names of the stats v…
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti
by
Y
•
0
I did not use the space between the `-u` flag and the `-o` flag (the blank line) but I did do what you recommended:
# Run CuffDiff wit…
Answer: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti
by
Pierre Lindenbaum
157k
how about simply trying:
```
cuffdiff -u "${annotation_gtf}" \
-o "${output_directory}" \
-b "${reference_genome}" \
-p "${num_th…
Comment: Using STAR aligner to build index of hg38
by
Grace
•
0
Yes, I know also need a GTF file. So the GTF file will include RNA information?
Thanks for your answer!!
Comment: STAR Intron Motif Script Gives Segmentation fault Error
by
Y
•
0
I will try and figure it out on my own given what you all have mentioned. Thank you for your time.
Comment: Using STAR aligner to build index of hg38
by
Amitm
★
2.2k
Have you gone through the manual [here][1]. In addition to the genome fasta file, you would also need a GTF file (of gene annotations) to b…
Comment: Highly inflated p-values in GWAS by regenie
by
4galaxy77
2.8k
You still definitely need to include principle components as covariates, even if your data is from the same ethnicity. Not including those …
Answer: How to create structural variants ground truth for alignment of two long-read ge
by
Christophe
•
0
Hi,
D-genies is using minimap2 to align both genomes and minimap2 is chaining local alignments to produce a global one. If the SV are sm…
Comment: Ties in reranked list
by
Hamza
•
0
In this case there are no results in my fgsea object unfortunately
Comment: Genes with promoter and enhancer regions as GTF
by
abis.1819104
•
0
how to generate promoters.bed and enhancer.bed files from gtf file
Comment: Deepvariant variant calling by singularity
by
jeffhsu3
•
0
I am having a similar issue was this ever resolved? Getting this error:
I0922 22:22:08.794076 140356687390528 make_examples_core.py:257] O…
Traffic: 2610 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6