Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
29 results • Page
1 of 1
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
5
views
Plink merge errors.
merge
file
.bed
cygwin64
PLINK
17 minutes ago by
Dinmukhamed
• 0
0
votes
1
reply
37
views
How do I get the gene annotations as a text file from a genebank file?
genebank
sequence-annotation
updated 2 hours ago by
BioinfGuru
★ 1.6k • written 3 hours ago by
eae6d2e7
• 0
0
votes
0
replies
27
views
Alignment with new reference
alignment
4 hours ago by
marco.barr
▴ 30
0
votes
0
replies
29
views
Bowtie2 alignment rate
galaxy
alignment
Bowtie
rate
7 hours ago by
pavithraashokkumar818
• 0
0
votes
0
replies
24
views
Variant calling of GBS data for polyploid plant
GBS
variants
polyploid
plant
7 hours ago by
analyst
▴ 10
0
votes
0
replies
34
views
Convert to ENTREZGENE
maize
ENTREZGENE
10 hours ago by
sansan_96
▴ 50
1
vote
0
replies
42
views
Synthetic lethality and cancer database
interaction
lethal
synthetic
12 hours ago by
Shicheng Guo
★ 9.4k
0
votes
1
reply
96
views
vcf file: number of samples does not match number of columns
vcf
bcftools
updated 15 hours ago by
Pierre Lindenbaum
160k • written 15 hours ago by
ekirsch
• 0
0
votes
4
replies
208
views
Is it reasonable to discard reads that show variation of quality across its length?
Trimming
13 hours ago by
BRENO
• 0
0
votes
2
replies
127
views
Error running local blastn in R using system2
blastn
NCBI
R
updated 14 hours ago by
Mensur Dlakic
★ 26k • written 17 hours ago by
Harrison
• 0
0
votes
1
reply
76
views
Looking for RPIP Illumina kit probe sequences
Sequences
Illumina
updated 19 hours ago by
GenoMax
140k • written 20 hours ago by
David Tachiquín
• 0
0
votes
9
replies
295
views
Low number of both surviving reads after trimming
trimmomatic
trimming
14 hours ago by
Jay
• 0
1
vote
2
replies
113
views
Number of CPUs to use by DRAP for transcriptomic assmbly
DRAP
CPU
transcriptomics
4 hours ago by
Mohamed Abderrahmane
▴ 10
3
votes
2
replies
115
views
Gene reads all zero for each sample
R
salmon
DE
DESeq2
21 hours ago by
DYLAN NICO
• 0
0
votes
0
replies
68
views
Contradictions in GSEA results
GSEA
Enrichment-analysis
PEA
updated 21 hours ago by
Ram
43k • written 22 hours ago by
Tolga
▴ 20
0
votes
0
replies
62
views
Illumina Dna Prep kit for sequencing phage linear genomes
tagmentation
transposons
phagetermini
sequencing
22 hours ago by
alenew.am
• 0
0
votes
3
replies
359
views
FindAllMarkers not working (Error (data layers are not joined. Please run JoinLayersWarning: When testing 1 versus all)
FindAllMarkers
seurat
re-clustering
21 hours ago by
Nitin
• 0
0
votes
1
reply
100
views
(sc)RNA-seq dataset for these cell lines: HEK293, HeLa, PC3 and U2OS
scRNA-seq
updated 22 hours ago by
Ram
43k • written 22 hours ago by
chiditatawmbi
• 0
0
votes
1
reply
121
views
Normalization strategies for comparing mapped reads across samples in RNA-seq
normalization
rnaseq
updated 21 hours ago by
Ram
43k • written 23 hours ago by
Picasa
▴ 640
0
votes
0
replies
82
views
How to change alternate conformation occupancy ?
Bio.PDB.Atom
Bio.PDB
biopython
updated 21 hours ago by
Ram
43k • written 1 day ago by
udakshi
• 0
1
vote
2
replies
128
views
Flow Cytometry Data Analysis by Seurat
Seurat
updated 20 hours ago by
Ram
43k • written 1 day ago by
gdfsnkfns
• 0
1
vote
11
replies
310
views
struggle to get fasta files from ucsc goldenPath
ucsc
getfasta
fasta
updated 19 hours ago by
GenoMax
140k • written 1 day ago by
Lila M
★ 1.2k
2
votes
2
replies
131
views
Volcano Plot Output Inquiry: Graphs Facing Down
rstudio
volcano-plot
updated 21 hours ago by
dariober
14k • written 1 day ago by
Pumla
• 0
0
votes
1
reply
99
views
Merging featureCounts output for different species
featureCounts
RNA-seq
updated 18 hours ago by
Ram
43k • written 1 day ago by
Christian
• 0
0
votes
0
replies
74
views
SPOTlight deconvolution logFC, logFC cohen or mean.AUC
spatial-transcriptomics
SPOTlight
logFC
deconvolution
updated 22 hours ago by
Ram
43k • written 1 day ago by
M'zelle
• 0
2
votes
10
replies
730
views
Only one read per run - Trying to use CellRangerv7
Fastq
CellRanger
updated 22 hours ago by
Ram
43k • written 5 weeks ago by
Sky
▴ 10
1
vote
12
replies
548
views
Nanopore data filtering using fastp
fastp
nanopore
21 hours ago by
emilydolivo97
• 0
0
votes
5
replies
317
views
Parsing fasta file by coordinates
linux
fasta
updated 20 hours ago by
GenoMax
140k • written 3 days ago by
sorrymouse
▴ 120
0
votes
1
reply
482
views
Nanopore multisample variant calling
SNPs
nanopore
SNP-calling
variants
multisample
updated 2 hours ago by
emilydolivo97
• 0 • written 2.1 years ago by
colindaven
6.3k
29 results • Page
1 of 1
Recent Votes
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Volume II
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
Comment: Gene reads all zero for each sample
Synthetic lethality and cancer database
Answer: log2(TPM+1)
Comment: Error in openning FastQC
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Recent Locations •
All
UK,
2 minutes ago
Poland,
2 minutes ago
Dublin, Ireland,
3 minutes ago
United States,
3 minutes ago
Lyon,
4 minutes ago
Marseille,
5 minutes ago
Taiwan,
6 minutes ago
Recent Awards •
All
Popular Question
to
svlachavas
▴ 780
Teacher
to
Pierre Lindenbaum
160k
Popular Question
to
brian.fristensky
▴ 460
Popular Question
to
Ann
★ 2.4k
Commentator
to
GenoMax
140k
Commentator
to
Devon Ryan
104k
Popular Question
to
amitpande74
▴ 20
Recent Replies
Comment: Mapping ortholog human and mouse transcript
by
1769mkc
★ 1.2k
for hgnc and ensembl that can be done for transcript id for human to mouse ortholog its difficult to parse and map the exact version from g…
Comment: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of
by
Mensur Dlakic
★ 26k
Take it from someone who has hosted both a successful and a failed research topic: these deadlines are unrealistic. I am guessing you are p…
Answer: Tissue specific mRNA expression dataset in human and mouse
by
BioinfGuru
★ 1.6k
Awesome, years ago I wrote my thesis on the use of Tau to calculate tissue specificity, enjoy! The supplementary materials in the paper is…
Answer: Mapping ortholog human and mouse transcript
by
BioinfGuru
★ 1.6k
That error is on the server side, nothing to do with you, and is very common. Usually the fix is to try again in an hour, or to insert host…
Comment: Nanopore multisample variant calling
by
emilydolivo97
• 0
hello @colindaven , Did you find a suitable tool for this purpose please ? I'm dealing with fungal dataset
Comment: How do I get the gene annotations as a text file from a genebank file?
by
BioinfGuru
★ 1.6k
Can you upload or post a link to the genbank file please?
Comment: Mapping ortholog human and mouse transcript
by
manaswwm
▴ 490
I usually perform biomaRt queries with their `getBM()` function where I list the input using `filter` and `values` option and my request in…
Comment: DESeq2 and normalization
by
JH
• 0
Thank you for your response. I have often seen commands like dds <- estimateSizeFactors(dds) normalized_counts <- counts(dds, normalized=T…
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
by
Mohamed Abderrahmane
▴ 10
It's the case that there's no indication of multi-threading in the documentation. However, it made me wonder why the developers would restr…
Answer: Is RNAseq data from a monoclonal cell line technically considered scRNAseq?
by
Soheil
▴ 90
Bulk RNAseq from any sample is still considered a bulk sample. Running bulk RNA sequencing on a sample with any level of cell type/state c…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Yikes. Well, this is from an Illumina MiniSeq. Sure, I will use alignment, but only to remove host reads. Then the remaining reads will go …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
This is going to be tough to diagnose. Are you going to align to a reference? If so go ahead with the alignments to see if alignments turn …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Thank you for replying. I have separated the reads with at least one N on them and they account for 0.2% of the total reads in the file (8'…
Comment: Error running local blastn in R using system2
by
Mensur Dlakic
★ 26k
The `-db data/nt_euk` switch means that in your current directory you have a subdirectory called `data`, and all the `nt_euk` files are in …
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your opinion. I will try with lower LEADING and TRAILING bases. By the way, I tried to set `keepBothReads:true` through sear…
Traffic: 2033 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6