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188 results • Page
1 of 4
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Votes
Replies
7
votes
4
replies
1.3k
views
microarray gene datasets
gene
updated 2 days ago by
Ram
37k • written 7.7 years ago by
bioinfo
▴ 60
7
votes
8
replies
1.6k
views
How can we time a recent gene duplication event using (neutral?) DNA mutations as molecular clock?
molecular-clock
gene-duplication
phylogeny
updated 2 days ago by
Ram
37k • written 7.7 years ago by
xiaofeng.dong12
▴ 20
6
votes
9
replies
353
views
Error when runing Bowtie2: (ERR): bowtie2-align exited with value 1
error
BAM
Bowtie
updated 5 days ago by
GenoMax
125k • written 10 days ago by
luzglongoria
▴ 40
5
votes
7
replies
3.0k
views
STAR aligner pauses frequently during mapping
rna-seq
STAR
updated 4 days ago by
Ram
37k • written 7.7 years ago by
E Chen
• 0
5
votes
2
replies
2.2k
views
Cut & run - bowtie2 dovetail option
cut and run
dovetail
bowtie2
updated 5 days ago by
baijiangshan9726
• 0 • written 2.3 years ago by
blur
▴ 270
5
votes
14
replies
674
views
How to Calulate Allele Frequency from a VCF File?
frequency
allele
VCF
updated 5 days ago by
Jeremy Leipzig
21k • written 8 days ago by
Emoji
• 0
4
votes
11
replies
2.5k
views
Please add an explicit type tag :NAME
software-error
next-gen
genome
updated 5 days ago by
Ram
37k • written 4.7 years ago by
mahdikhadem95
▴ 30
4
votes
2
replies
217
views
Analyzing bulk RNA-seq
RNAseq
updated 2 days ago by
swbarnes2
13k • written 2 days ago by
Zaid
• 0
4
votes
2
replies
2.3k
views
Signal Distribution Charts
ChIP-Seq
next-gen
R
updated 4 days ago by
Ram
37k • written 7.7 years ago by
John
13k
3
votes
2
replies
175
views
WGCNA gene selection: gene significance or LASSO?
LASSO
WGCNA
updated 3 days ago by
rpolicastro
11k • written 4 days ago by
janinubinu
• 0
3
votes
4
replies
1.5k
views
getting reference genome accession number
RNA-Seq
updated 4 days ago by
Ram
37k • written 7.7 years ago by
fi1d18
★ 4.1k
3
votes
6
replies
300
views
Which file and data structure is used to create volcano plot from scRNA-Seq experiment?
plot
Volcano
1 day ago by
Chris
▴ 60
3
votes
0
replies
2.1k
views
Informations about UCSC bigWigCorrelate tools
bigwig
ucsc
updated 4 days ago by
Ram
37k • written 7.7 years ago by
jacquesserizay
▴ 30
3
votes
6
replies
2.0k
views
snpEff suitable for Bathycoccus prasinos?
protist
non-human
SNP
annotation
updated 5 days ago by
Ram
37k • written 7.8 years ago by
nathalie.joli
▴ 10
3
votes
2
replies
1.5k
views
parsing the samtools view out put
RNA-Seq
updated 1 day ago by
Ram
37k • written 7.7 years ago by
fi1d18
★ 4.1k
2
votes
3
replies
476
views
samtools mpileup error - 1 samples in 1 input files
samtools
bioinformatics
SAM
BAM
mpileup
updated 3 days ago by
Pierre Lindenbaum
152k • written 13 months ago by
joseph.kelly.94
▴ 10
2
votes
7
replies
6.6k
views
Bowtie2 run out of memory
software-error
alignment
bowtie2
updated 2 days ago by
Ram
37k • written 7.7 years ago by
anon
▴ 50
2
votes
12
replies
4.1k
views
Adding barcodes to forward and reverse reads after sequencing
obitools
barcoding
next-gen-sequencing
updated 2 days ago by
Ram
37k • written 7.7 years ago by
cmogren
▴ 20
2
votes
0
replies
196
views
Should one concatenate two haplotype genome assemblies into one assembly?
PacBio
genome-assembly
whole-genome-sequence
Hi-C
updated 2 days ago by
Ram
37k • written 11 months ago by
anikcropscience
▴ 150
2
votes
3
replies
749
views
Merging FASTQs from the same sample
Merging
FASTQ
cellranger
scRNAseq
10X
updated 6 days ago by
Angelina_G
• 0 • written 13 months ago by
adellegreene
• 0
2
votes
4
replies
281
views
Retrieve specific fasta sequences from a group of assemblies
CDS
gene
sequence
6 days ago by
SushiRoll
▴ 100
1
vote
1
reply
272
views
How do I subset a dataframe based on several other dataframes using R?
R
affymetrix
updated 2 days ago by
Ram
37k • written 12 months ago by
melissachua90
▴ 40
1
vote
3
replies
216
views
How to correctly use bedtools merge?
bedtools
updated 5 days ago by
Ram
37k • written 5 days ago by
Amisha
• 0
1
vote
3
replies
279
views
Calculating PRS in a large cohort
PRS
3 days ago by
haasroni
• 0
1
vote
2
replies
196
views
How to install pandas
ml
python
offtopic
updated 5 days ago by
Ram
37k • written 6 days ago by
Sargun
• 0
1
vote
4
replies
3.0k
views
unplaced, unlocalized, ... scaffolds from hg19 to GRCh38
Assembly
updated 4 days ago by
ED
• 0 • written 7.1 years ago by
tabone.olivier
▴ 10
1
vote
0
replies
1.8k
views
How to test saturation for codeml in paml?
next-gen
SNP
updated 3 days ago by
Ram
37k • written 7.7 years ago by
xiaofeng.dong12
▴ 20
1
vote
13
replies
409
views
RNAseq for DE purpose
RNAseq
updated 2 days ago by
swbarnes2
13k • written 2 days ago by
m.habib
• 0
1
vote
8
replies
351
views
Downloading NT chunks from NCBI and creating a BLAST database
nucleotide
blast
nt
blastn
database_update.pl
updated 6 days ago by
lennykovac
▴ 80 • written 11 days ago by
Vinícius
• 0
1
vote
1
reply
147
views
bwa mem duration?
performance
mapping
bwa
updated 2 days ago by
ATpoint
68k • written 2 days ago by
lacb
▴ 30
1
vote
1
reply
166
views
tools that align sequences in mouse and human
r
updated 4 days ago by
dthorbur
▴ 260 • written 4 days ago by
Chironex
▴ 40
1
vote
0
replies
2.0k
views
Definition of splicing eQTLs in RNA-Seq and arrays
genome
RNA-Seq
snp
updated 2 days ago by
Ram
37k • written 7.7 years ago by
User 7754
▴ 250
1
vote
3
replies
307
views
MesKit error message - Join columns must be present in data.
MesKit
R
updated 4 days ago by
Ram
37k • written 6 days ago by
CH1374
▴ 10
1
vote
2
replies
1.1k
views
Where to learn about getting a few thousand genomes sequenced?
budget
sequencing
updated 5 days ago by
Ram
37k • written 7.7 years ago by
Vincent Laufer
★ 2.5k
1
vote
6
replies
2.0k
views
Error using samtools for downloading bam files
bam
samtools
updated 2 days ago by
Ram
37k • written 7.7 years ago by
Maria333
▴ 20
1
vote
6
replies
1.9k
views
How to increase the speed of miRanda target prediction program?
miranada
mirna
parallel
updated 6 days ago by
kuttibiotech2009
▴ 20 • written 5.2 years ago by
lakhujanivijay
5.7k
1
vote
2
replies
221
views
Speciation of insecta using NGS technology
speciation
NGS
18S
insecta
4 days ago by
dante
• 0
1
vote
2
replies
162
views
snakemake Unexpected keyword bam in rule definition
snakemake
4 hours ago by
Aidand
• 0
1
vote
3
replies
223
views
Variant effect predictor in ictalurus punctatus
VariantEffectPredictor
VEP
updated 6 days ago by
barslmn
★ 1.2k • written 6 days ago by
Hayler Edu
▴ 30
1
vote
0
replies
1.6k
views
Running PAML models on HyPhy
paml
site-models
hyphy
phylogenetics
updated 5 days ago by
Ram
37k • written 7.7 years ago by
DR
▴ 10
1
vote
7
replies
2.6k
views
Fragmented ABySS assembly
Assembly
updated 3 days ago by
Ram
37k • written 7.7 years ago by
zgayk
▴ 90
1
vote
1
reply
190
views
SNP calling
SNPcalling
updated 4 hours ago by
Fabio Marroni
★ 2.9k • written 1 day ago by
abozorgmehr1985
▴ 10
1
vote
1
reply
342
views
Getting a PhD in Bioinformatics only having a BSc in Data Science
software-development
project
updated 2 days ago by
Ram
37k • written 12 months ago by
d
• 0
1
vote
3
replies
225
views
Strand-specific in HT-Seq
HT-Seq
Strand-specific
4 days ago by
ibq.enriquepola
• 0
1
vote
0
replies
117
views
How to use CAFE from Orthofinder Results
expansion
orthofinder
cafe
gene
1 day ago by
ahmadjoyyia
▴ 10
1
vote
1
reply
178
views
Visualize variants and percentage of variants from one sample of Amplicon Seq data?
Amplicon
PCR
RNAseq
GATK
BWA
updated 3 days ago by
cmdcolin
★ 2.8k • written 4 days ago by
Saran
▴ 20
0
votes
0
replies
159
views
what does ALT ID DUP refer to when ALT ID for copy number are already specified
ALT
ID
CNV
VCF
2 days ago by
anubratadas
▴ 20
0
votes
0
replies
104
views
CUT&RUN H3K27me3 normalization with spike-in
deepTools
3 days ago by
mohansri1
• 0
0
votes
0
replies
136
views
GSEA multiple group analysis
gsea
single-cell
1 day ago by
piotto
▴ 10
0
votes
1
reply
279
views
How to calculate 2.5% pvalues for the 2 ends of the distribution?
numpy
t-test
python
genomics
updated 2 days ago by
Ram
37k • written 7 weeks ago by
Virat_Baahubali
• 0
188 results • Page
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