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Limit : this week
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329 results • Page
1 of 7
Sort: Votes
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Votes
Replies
10
votes
6
replies
2.5k
views
which language to use for such a bioinformatics web services infrastructure?
web-services
java
updated 10 hours ago by
Ram
38k • written 7.8 years ago by
lait
▴ 170
8
votes
25
replies
1.9k
views
construction of a database
sql
noSQL
neo4j
database
updated 15 hours ago by
Ram
38k • written 22 months ago by
Debut
▴ 20
8
votes
12
replies
2.4k
views
Use BLAST Command Line Applications to run a folder of many sequences against a database
BLAST
updated 4 days ago by
Ram
38k • written 19 months ago by
daver.v
▴ 30
7
votes
10
replies
1.1k
views
col as names [solved]
R
updated 4 days ago by
Ram
38k • written 4.0 years ago by
demoraesdiogo2017
▴ 90
7
votes
4
replies
1.7k
views
useful and freely available softwares for Bioinformatics
software
updated 4 days ago by
Ram
38k • written 8.0 years ago by
Mo
▴ 920
6
votes
9
replies
4.7k
views
Best Possible set of Python interview questions for Bioinformatics, that a recruiter can ask?
python
updated 1 day ago by
Ram
38k • written 7.9 years ago by
gaurav.singh
▴ 10
6
votes
12
replies
1.1k
views
Good tutorials/textbooks/articles to introduce biomarker discovery to a biologist?
r
biomarker
updated 4 days ago by
Ram
38k • written 4.2 years ago by
english.server
▴ 290
6
votes
11
replies
681
views
Calculate RPKM
RPKM
1 day ago by
Chris
▴ 70
3
votes
4
replies
3.3k
views
Mauve File Format
ncbi
gb
mauve
gbk
updated 4 days ago by
Ram
38k • written 5.4 years ago by
trionanibrannacht
• 0
3
votes
2
replies
124
views
Power analysis for patient samples
RNA-seq
12 hours ago by
aropri
▴ 130
3
votes
3
replies
332
views
Retrieving information from FASTA file
NGS
FASTA
VCF
updated 10 hours ago by
Ram
38k • written 12 months ago by
Maryam
▴ 10
3
votes
6
replies
1.7k
views
Methods and type datastructures use by Splign?
data-structure
splign
updated 15 hours ago by
Ram
38k • written 6.4 years ago by
Esaie
▴ 160
3
votes
4
replies
473
views
Changing Temporary File Location for Local BLASTP to nr Database
protein
blast
nr
updated 1 day ago by
Ram
38k • written 10 weeks ago by
katieostrouchov
▴ 20
3
votes
4
replies
461
views
Genome Reference Consortium Human Build - Transcriptome Size Query
GRC
updated 4 days ago by
Ram
38k • written 10 months ago by
Oligo96
• 0
2
votes
10
replies
1.2k
views
multiple FASTA sequnces in to one full sequnce according to their chromosome number
NGS
FASTA
bam
updated 4 days ago by
Ram
38k • written 4.0 years ago by
Anu
• 0
2
votes
8
replies
474
views
Depth of Coverage in Mitochondrial Genome with Samtools
samtools
depth-of-coverage
Mitochondrial-genome
2 days ago by
Lida
• 0
2
votes
0
replies
1.5k
views
Any relation between pan genome and genome plasticity?
genome
gene
sequence
updated 5 days ago by
Ram
38k • written 8.1 years ago by
Loub
▴ 20
2
votes
5
replies
206
views
GATK GenotypeGVCFs explain
calling
gatk
variant
GenotypeGVCFs
updated 19 hours ago by
Pierre Lindenbaum
153k • written 21 hours ago by
Sarah
▴ 30
2
votes
3
replies
254
views
mRNA Seq
NGS
updated 5 days ago by
Ram
38k • written 6 days ago by
Yaseen
▴ 10
2
votes
4
replies
433
views
Trouble with transcripts_id when using how_are_we_stranded_here python package
bash
sequencing
RNA-seq
4 days ago by
ashleymb1116
• 0
2
votes
2
replies
288
views
HaplotypeCaller GENOTYPE GIVEN ALLELES doesn't genotype given alleles
Gatk
HaplotypeCaller
VCF
5 days ago by
kamanovae
▴ 80
2
votes
7
replies
763
views
Import data for igraph using R
r
igraph
updated 10 hours ago by
Ram
38k • written 12 months ago by
kaisakaiho73847
• 0
2
votes
1
reply
595
views
Bioinformatics exercise on extracting FASTA sequences corresponding to taxon from a microbiome sequencing experimet in another file (.TSV)
fasta
homework
updated 4 days ago by
Ram
38k • written 2.2 years ago by
flisosergio
• 0
2
votes
3
replies
504
views
BWA generating a sam file without alignment information
sam
bwa
updated 9 hours ago by
Ram
38k • written 13 months ago by
kelsey.e.witt
• 0
2
votes
10
replies
5.9k
views
fq.gz file use
BioEdit
R
updated 4 days ago by
Ram
38k • written 4.0 years ago by
choi.yisoo.hi
• 0
2
votes
2
replies
1.1k
views
How to obtain lineage information from taxid?
euitls
taxid2lineage
accession2taxid
updated 4 days ago by
Ram
38k • written 2.4 years ago by
6schulte
▴ 30
2
votes
1
reply
407
views
Bioinformatics application on data
WES
updated 4 days ago by
Ram
38k • written 19 months ago by
Sania
• 0
2
votes
5
replies
520
views
msigdbr returns the same genesets for mouse as in for human,
msigdbr
updated 10 hours ago by
igor
13k • written 4 days ago by
e.r.zakiev
▴ 30
2
votes
4
replies
583
views
Noob question: I want to use TCGA data to compare survival with mutations, how should I do it?
cancer
mutations
tcga
updated 4 days ago by
Ram
38k • written 9 months ago by
cdeantoneo31
▴ 10
2
votes
2
replies
688
views
Adjusting data for covariates
R
updated 4 days ago by
Ram
38k • written 2.1 years ago by
chutt
▴ 20
2
votes
2
replies
3.3k
views
dyld : Library not loaded: Reason: image not found
python
dyld
R
updated 4 days ago by
Ram
38k • written 21 months ago by
jjp55
▴ 20
2
votes
2
replies
299
views
bcftools annotate -a
bcftools
VCF
updated 4 days ago by
Ram
38k • written 20 days ago by
anasjamshed
▴ 120
2
votes
6
replies
1.0k
views
GFF3 TO GTF CONVERSION
GFF3
Hydra
GFF
GTF
updated 9 hours ago by
Ram
38k • written 14 months ago by
Shagnik
• 0
1
vote
2
replies
421
views
Where Can I Find Free Online Software That Recognizes MIMAT... MI... Accession Numbers For My MicroRNA DEG Experiment
microarray
accession-number
MicroRNA
updated 4 days ago by
Ram
38k • written 3 months ago by
Cee
• 0
1
vote
3
replies
1.5k
views
Merging individual .bed files?
bed
bam
samtools
bamtobed
updated 4 days ago by
Ram
38k • written 4.7 years ago by
genomics Newbie
▴ 60
1
vote
2
replies
227
views
How much reads per cell for fusion detection with Nanopore ?
single-cell
fusion
nanopore
5 days ago by
Evan
▴ 170
1
vote
4
replies
759
views
Method to classify given sample into subtype
Breast-Cancer
RNA-Seq
TCGA-BRCA
TCGA
updated 4 days ago by
Ram
38k • written 2.4 years ago by
im
• 0
1
vote
3
replies
348
views
DESeq2 code to perform DEG analysis
SEseq2
DEG
updated 4 days ago by
Ram
38k • written 22 days ago by
rupali
• 0
1
vote
1
reply
1.3k
views
Biology student new to genetic bioinformatics
genetics
updated 4 days ago by
Ram
38k • written 7.3 years ago by
bioinformatics_student
• 0
1
vote
1
reply
222
views
just one plot appears in the shiny application not all
plot
source
shiny
code
updated 2 days ago by
bkleiboeker
▴ 320 • written 2 days ago by
mrashad
▴ 60
1
vote
2
replies
937
views
How to convert multiple .vcf files into single .ped (PLINK compatible files)?
vcf
ped
PLINK
WGS
updated 4 days ago by
Ram
38k • written 17 months ago by
isml2688
• 0
1
vote
0
replies
82
views
Creating sample groups from a combination of genes for survival analysis
Survival
9 hours ago by
krushnach80
★ 1.1k
1
vote
2
replies
449
views
CONECT part in the pdb file
python
pandas
pdb
updated 10 hours ago by
Ram
38k • written 11 months ago by
Elsaid
• 0
1
vote
3
replies
437
views
Hisat2 Script Help
hisat2
mapping
updated 4 days ago by
Ram
38k • written 8 months ago by
smithkthedale
▴ 10
1
vote
8
replies
1.2k
views
Loading a pre-filtered loom file into pySCENIC
scRNA-seq
pySCENIC
loom
updated 12 hours ago by
Ram
38k • written 7 months ago by
Jacob
• 0
1
vote
1
reply
164
views
How to create GO Bar Plot using data obtained from DAVID Functional Enrichment Analysis?
Plot
DAVID
R
updated 22 hours ago by
Basti
★ 1.4k • written 23 hours ago by
Stefanus C.B.
• 0
1
vote
2
replies
564
views
Help to understand set.seed(547) in R
p-value
R
updated 4 days ago by
Ram
38k • written 16 months ago by
Hien
• 0
1
vote
2
replies
237
views
Handling single-sample VCF after haplotypecaller
VCF
2 days ago by
Y.H.P
• 0
1
vote
3
replies
278
views
FeatureCounts >edgeR > GO
RNA-SEQ
updated 22 hours ago by
Basti
★ 1.4k • written 2 days ago by
Pegasus
▴ 80
1
vote
1
reply
453
views
How is the best way to filter a BED file to get specific exons from their gene ID
bed
updated 10 hours ago by
Ram
38k • written 10 months ago by
ManuelDB
▴ 30
329 results • Page
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Answer: RNA-SEQ
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Comment: RNA-SEQ
Answer: RNA-SEQ
Gene Set Enrichment Analysis
Can I sort my bam files with Picard MergeSamFiles?
Answer: Problem generating a .vcf after upgrade of samtools and bcftools
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Comment: Can someone help me with searching overlapping values between two files?
by
mxm189
• 0
I tried some stuff but it didnt work. I used ChatGPT, because I'm not good at this. I tried sorting of the two files first # Sort the inp…
Comment: Survival analysis with gene expression
by
krushnach80
★ 1.1k
Hello @kevinblighe I would like to get your help in [this][1] [1]: https://www.biostars.org/p/9558148/
Comment: activity of unloaded/unassembled Tn5
by
callumjcparr
• 0
![enter image description here][1] ![enter image description here][2] [1]: /media/images/72273297-373f-4654-9ddb-19b8859c [2]: /med…
Answer: How to implement this two-stage one-to-many workflow using WDL?
by
Ruben
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> Unfortunately, as far as I can tell, WDL provides no support for iterating over the contents of a directory. (I find this shocking. I con…
Answer: activity of unloaded/unassembled Tn5
by
callumjcparr
• 0
So I hope someone is still interested in this. We have taken to preparing recombinant Tn5 now as it's much cheaper than commercial suppli…
Comment: RNA-SEQ
by
ali
• 0
thanks for your helping
Comment: TSS of protein coding genes
by
ConvolutedGenome
▴ 10
I am quite confused with GENCODE GTF file, So, within the GENCODE GTF file, I noticed that each (protein-coding) gene has multiple "transc…
Comment: Recommendation for (Alternative) Splicing analysis packages for bulk RNA-seq da
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5.8k
Hi! I personally use [SplAdder][1], in case you want to add it to your list :). [1]: https://github.com/ratschlab/spladder
Answer: Problem generating a .vcf after upgrade of samtools and bcftools
by
Andy
• 0
Really the only needed, that help worked, thank's
Comment: Active enhancers for mm39
by
seidel
11k
Just curious what you mean by "active" enhancers. Enhancers are active in a given context (e.g. cell type developmental state, etc.), and m…
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ntsopoul
▴ 20
try absolute paths navigate to the directory with cd and use pwd to get the absolute directory.
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Thank you. I will use this package since I am more familiar with R
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thank you. i will go through it
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Yeah, after trimming and fastqc I will have to generate MultiQC plots and after do mapping with reference genome. As I know, for eukaryotes…
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Oh, I see, Thank you however, I want to make vcf files with gatk haplotypecaller and GenotypeGVCFs. But I got some problems I have about 2.…
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