updated 2 hours ago by
Pierre Lindenbaum
153k
•
written 2 hours ago by
fatemeh
•
0
0
votes
1
reply
29
views
0
votes
2
replies
123
views
0
votes
2
replies
122
views
1
vote
3
replies
909
views
0
votes
2
replies
135
views
11 hours ago by
ugur
•
0
0
votes
0
replies
60
views
1
vote
0
replies
59
views
17 hours ago by
barrypraveen
▴
110
0
votes
0
replies
65
views
19 hours ago by
farzaneafzali
▴
70
0
votes
0
replies
66
views
updated 18 hours ago by
Pierre Lindenbaum
153k
•
written 19 hours ago by
shreshta2396
•
0
0
votes
0
replies
57
views
19 hours ago by
parrasevilla.bioinfo
•
0
0
votes
1
reply
81
views
0
votes
1
reply
147
views
updated 17 hours ago by
jv
★
1.0k
•
written 23 hours ago by
Omics data mining
▴
210
1
vote
2
replies
214
views
1
vote
2
replies
207
views
0
votes
0
replies
123
views
0
votes
2
replies
168
views
1 day ago by
brandnewatthis
•
0
0
votes
0
replies
142
views
0
votes
1
reply
147
views
0
votes
0
replies
120
views
0
votes
0
replies
110
views
1 day ago by
biomarco
▴
20
0
votes
0
replies
109
views
2
votes
6
replies
295
views
updated 1 day ago by
Ram
38k
•
written 1 day ago by
abdelmalek.benmeziane
•
0
0
votes
1
reply
131
views
updated 1 day ago by
Mensur Dlakic
★
23k
•
written 1 day ago by
Fathima
•
0
0
votes
1
reply
138
views
0
votes
0
replies
108
views
3
votes
2
replies
204
views
2 days ago by
rene.j.erhardt
▴
20
1
vote
2
replies
211
views
2
votes
4
replies
229
views
0
votes
0
replies
115
views
0
votes
0
replies
123
views
updated 2 days ago by
Ram
38k
•
written 2 days ago by
npavliukovec
•
0
0
votes
0
replies
103
views
2
votes
12
replies
504
views
0
votes
0
replies
102
views
2 days ago by
Lakshmi
▴
10
0
votes
0
replies
99
views
0
votes
0
replies
91
views
0
votes
0
replies
84
views
0
votes
0
replies
96
views
0
votes
0
replies
97
views
0
votes
0
replies
154
views
0
votes
0
replies
87
views
1
vote
1
reply
146
views
0
votes
0
replies
85
views
2 days ago by
diqixiaoyaoer
▴
10
0
votes
0
replies
93
views
1
vote
3
replies
195
views
0
votes
0
replies
108
views
0
votes
0
replies
71
views
4
votes
3
replies
181
views
3
votes
8
replies
282
views
0
votes
0
replies
100
views
2
votes
3
replies
202
views
updated 1 day ago by
Darked89
4.2k
•
written 2 days ago by
phillip.brassington
▴
10
Recent Votes
Recent Locations •
All
Germany, 1 minute ago
Hong Kong, 2 minutes ago
India, 4 minutes ago
Germany, 6 minutes ago
Japan, 7 minutes ago
China, 10 minutes ago
WCIP | Glasgow | UK, 11 minutes ago
Recent Awards •
All
Popular Question to
bitpir
▴
210
Popular Question to
randalljellis
▴
90
Popular Question to
RvV
▴
10
Popular Question to
farzaneafzali
▴
70
Scholar to
MirianT_NCBI
▴
460
Popular Question to
Ap1438
▴
50
Recent Replies
Answer: Problem running interproscan-5.15-54.0 for protein sequences
by
Pratyay
•
0
Hi, can you guide me how to compile the src folder?
Many thanks!
Comment: Matching gene-expression data with clinical data: best practices.
by
krushnach80
★
1.1k
You can check [this][1]
[1]: https://www.linkedomics.org/
Answer: Matching gene-expression data with clinical data: best practices.
by
jose.sgomez94
•
0
Figured out one can use the TCGAutils package in R and UUIDtobarcode() function. Still, suggestions of best practices would be awesome!
Answer: Understanding multifactor designs and control variables in DESeq2
by
FrankStarling
▴
50
https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2021/RNAseq/Markdowns/10_DE_analysis_with_DESeq2.Solutions.html
…
Answer: Is it possible to do DGE analysis using log 2 normalized data with EdgeR ?
by
Adaline.D
•
0
I appreciate your help, LChart! I will use raw data in case of a substantial loss of power.
(1) The publication did a PCA and then analy…
Answer: Is it possible to do DGE analysis using log 2 normalized data with EdgeR ?
by
LChart
2.2k
Short answer: use LIMMA
Long answer: edgeR uses a negative binomial model, and expects *counts* and not *values*. Please read section 2.8.…
Comment: Python formatting when visualizing Primer3-py dimers
by
bhumm
▴
30
Wayne, both of these methods work beautifully. I really appreciate the detail you provided, thank you so much for your help!
Comment: Ortholog assembly and extraction
by
dthorbur
▴
420
I really like `orthofinder` and use it frequently, but there are also plenty of other tools out there. [Here](https://academic.oup.com/mbe/…
Answer: Cellranger sequencing
by
ATpoint
70k
Not that I am aware of. Unlike methods such as salmon it does genome alignment and does not resolve the exact transcript expression composi…
Answer: Assembly at lineage level from shotgun data ?
by
Mensur Dlakic
★
23k
The paper I list below is meant for improving the existing MAG assemblies. Yet the program will do what you want: if you give it a referenc…
Comment: Ortholog assembly and extraction
by
GenoMax
127k
Many seem to use `orthofinder` for this purpose. See if it is useful: https://github.com/davidemms/OrthoFinder
Answer: Python formatting when visualizing Primer3-py dimers
by
Wayne
★
1.7k
Try this so you'll see that using [tabulate](https://github.com/astanin/python-tabulate) to print the dataframe causes it to respect the li…
Comment: Python formatting when visualizing Primer3-py dimers
by
bhumm
▴
30
Glad I am making this more clear. The 'test1' in practice will be the 'primer name' to allow for tracking of other metrics (Tm, hairpin str…
Traffic: 926 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6