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Limit : this year
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1,000 results • Page
2 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
1
reply
179
views
Software for Spatial Transcriptomic data [NanoString; Visium]?
NanoString
Visium
Spatial-Transcriptomics
10X
3 days ago by
LauferVA
3.8k
1
vote
1
reply
163
views
ANNOVAR Download Failing
ANNOVAR
updated 3 days ago by
Ram
41k • written 3 days ago by
tony
• 0
0
votes
1
reply
169
views
Sorted bam files are empty after sorting them from bam
bam
dna
updated 3 days ago by
Ram
41k • written 3 days ago by
mgranada3
▴ 30
0
votes
2
replies
230
views
Downsampling ATAC-seq BAM files
ATAC-seq
3 days ago by
Elise
• 0
0
votes
0
replies
106
views
spatial metabolomics, python
spatial-metabolomics
updated 4 days ago by
Ram
41k • written 4 days ago by
joha
▴ 10
1
vote
4
replies
242
views
Feasibility of Enrichment Analysis from RTqPCR results
GO
RT-qPCR
Enrichment-Analysis
updated 3 days ago by
GenoMax
136k • written 4 days ago by
Javier
• 0
0
votes
0
replies
117
views
WGCNA for different tissues
WGCNA
Worms
RNA-Seq
4 days ago by
kdca
• 0
0
votes
1
reply
186
views
Contrasts in R
contrasts
r
updated 4 days ago by
jv
★ 1.3k • written 4 days ago by
SGMS
▴ 130
0
votes
1
reply
622
views
How to determine E. coli MLST (Multi Locus Sequence Typing ) from the sequencing of the PCR product of 7 housekeeping genes
MLST
phylogenetic
nanopre
updated 4 days ago by
Joe
21k • written 4 days ago by
Ralph
• 0
0
votes
1
reply
165
views
How to remove 3rd codon positions in a multiple sequence allignment?
i
updated 4 days ago by
Ram
41k • written 4 days ago by
francesco.degiglio
• 0
0
votes
0
replies
119
views
Classification ML model using different type of data
machine-learning
transcriptomics
R
python
biomarkers
4 days ago by
sil_bioinfo
▴ 40
0
votes
0
replies
113
views
RNA secondary structure for GRCH38 transcriptome
dot-bracket-notation
human
RNA-secondary-structure
GRCH38
4 days ago by
Saad Khan
▴ 420
0
votes
0
replies
103
views
Need to PrepSCTfindMarker again after subset if the original object has already been normalized?
FindMarker
Seurat
4 days ago by
Adrian
• 0
3
votes
1
reply
158
views
GEO dataset Microarray data analysis help
R
microarray
NCBI
GEO
updated 4 days ago by
Ram
41k • written 4 days ago by
Confused_human
▴ 20
0
votes
3
replies
214
views
Microarray batch correction method suggestions
microarray
batch-correction
updated 3 days ago by
Ram
41k • written 4 days ago by
Sumeet
• 0
0
votes
0
replies
100
views
GAPIT p-value significance threshold
GAPIT
p-value
GWAS
4 days ago by
Clayton
• 0
0
votes
0
replies
104
views
Enzyme commission number in ncbi Gene database
enzyme-commission-number
updated 4 days ago by
Ram
41k • written 4 days ago by
Maatary
• 0
0
votes
1
reply
153
views
Java error while running HiCDC overview code
R
Juicer
HiC
HiCDCPlus
updated 4 days ago by
Brian Bushnell
20k • written 4 days ago by
isMM
• 0
2
votes
4
replies
277
views
error when installing gistic2 using conda
conda
gistic2
updated 3 days ago by
Ram
41k • written 4 days ago by
luckyday1661
• 0
0
votes
0
replies
116
views
Expression differs when running plotTranscripts vs boxplot of FPKM or coverage values (R)?
R
updated 4 days ago by
Ram
41k • written 4 days ago by
boone5jones
• 0
0
votes
0
replies
102
views
Differing output: vcftools' --weir-fst-pop and R hierfstats package's varcomp.glob()
vcftools
hierfstats
fst
4 days ago by
S
• 0
0
votes
2
replies
208
views
what should I do if I get a compromised sample of scRNA-seq data?
scRNA-seq
data
snRNA-seq
updated 4 days ago by
ATpoint
78k • written 5 days ago by
wangjb702
• 0
0
votes
0
replies
95
views
Comparing 16S rRNA (culture) sequences with metagenome
metagenome
shotgun
rRNA_culture
16S
updated 5 days ago by
Ram
41k • written 5 days ago by
aswin
• 0
0
votes
4
replies
286
views
Filling gaps in BAM file
bamtools
samtools
gene
bam
updated 3 days ago by
seidel
11k • written 5 days ago by
hemr3
• 0
0
votes
1
reply
149
views
Annotation GTF/GFF Arabidopsis thaliana
Arabidopsis
GFF
GTF
Annotation
4 days ago by
enriquesan
• 0
1
vote
5
replies
322
views
vcftools
vcftools
updated 5 days ago by
Barista
▴ 10 • written 5 days ago by
sevda
• 0
0
votes
0
replies
83
views
How do I pick the best conditions for scATAC-Seq after a series of bulk test runs?
ATAC-seq
5 days ago by
cyril-cros
▴ 950
0
votes
1
reply
147
views
Microbial gene coverage from blast result
gene
coverage
4 days ago by
aanchal.yadav
• 0
0
votes
0
replies
89
views
extracting Uniprot IDs for Kegg pathways
mapping
uniprot
R
kegg
clusterprofiler
5 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
107
views
Funannotate iprscan Creates empty file
funannotate
interproscan
fungus
annotation
5 days ago by
Umer
▴ 50
2
votes
2
replies
232
views
4 Fastq files for a single run generated by 10X
scRNA-Seq
Fastq
SRA
10X
4 days ago by
hkarakurt
▴ 180
0
votes
4
replies
668
views
How to resolve the error of protein lacking a stop codon when using GenomeThreader for homology prediction?
genome
threader
3 days ago by
peanut
• 0
2
votes
5
replies
254
views
kallisto index build difference according to version
index
version
kallisto
updated 5 days ago by
dsull
★ 5.1k • written 5 days ago by
estilo
• 0
0
votes
2
replies
523
views
Understanding gene level copy number data from TCGAbiolinks
CNV
TCGA
updated 5 days ago by
Zhenyu Zhang
★ 1.1k • written 13 months ago by
billyK
• 0
1
vote
3
replies
347
views
Bam files generated with STAR cause a segmentation fault core dump error when used with another tool
RNA-Seq
mapping
updated 5 days ago by
GenoMax
136k • written 5 days ago by
bkffadia
• 0
0
votes
0
replies
119
views
Should I perform eQTL colocalization for just one of eGenes at a time?
colocalization
coloc
eCaviar
eQTL
6 days ago by
maximal_life
▴ 20
4
votes
2
replies
283
views
KEGG DATABASE
DATABASE
KEGG
updated 4 days ago by
jv
★ 1.3k • written 6 days ago by
Sijjil
• 0
0
votes
1
reply
217
views
Issue with genetic QC sex check
plink
7 days ago by
kl
▴ 10
0
votes
0
replies
120
views
BioSQL Unable to remove database using server.remove_database
BioSQL
biopython
Mysql
Python
7 days ago by
Navindu
• 0
0
votes
0
replies
130
views
bootstraped treemix show no migration event
Treemix
Bootstrap
7 days ago by
reza
▴ 300
0
votes
2
replies
1.5k
views
Does GNOMAD use all LOFTEE LoF filters?
loftee
gnomad
LOF
ensembl
vep
updated 7 days ago by
AMARU
• 0 • written 3.8 years ago by
brismiller
▴ 50
0
votes
3
replies
815
views
"MethylKit" package for WGBS data
MethylKit
WGBS
updated 7 days ago by
viveksomya123
• 0 • written 2.4 years ago by
shrinka.genetics
▴ 20
0
votes
0
replies
151
views
is there a way to set colors pallets for glMDSPlot(x)?
Glimma
glMDSPlot
7 days ago by
James
• 0
0
votes
0
replies
137
views
Compute matrix skipping many regions stating not found in compute matrix output
computematrix
Deeptools
7 days ago by
Mehwish
▴ 10
0
votes
0
replies
206
views
How to find promoters (such as GC box and TATA box) in set of genes using bioinformatics analysis ?
promoter
motif
updated 5 days ago by
Ram
41k • written 8 days ago by
shome
▴ 10
0
votes
2
replies
269
views
How to identify CG, CHG, or CHH from MeDIP data
MethylationStudy
CHG
CHH
CG
MeDIP
5 days ago by
Tm
★ 1.1k
0
votes
0
replies
161
views
Significance of several BUSCO target IDs for the same gene
target_id
sequence-ontology
BUSCO
duplication
8 days ago by
CoLa
• 0
0
votes
1
reply
215
views
doubt about usage of megahit
trinity
megahit
updated 8 days ago by
Istvan Albert
99k • written 8 days ago by
meera
• 0
0
votes
0
replies
152
views
Osmotic permeability of water transport in aquaporins
permeability
Osmotic
transport
Water
8 days ago by
Peerzada
• 0
0
votes
1
reply
456
views
Loftee no splice site annotations
Loftee
VEP
updated 8 days ago by
AMARU
• 0 • written 21 months ago by
Filago
▴ 90
1,000 results • Page
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Recent Votes
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Comment: which statistical test and which package for comapre datasets?
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I think you will need at least three replicates to be able to do statistics.
Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
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> Asking for bed file is not a suitable option in the current scenario. ???????
Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
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they only provided me the sorted.bam files aligned with hg19. I converted bam into fastq and started variant calling from there. Asking for…
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thanks for the suggestion. how can i obtain the bedfile of my targets (kit is proprietary - can I obtain bed from fasta? if yes how?)
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This may indicate that your R1 and R2 reads were processed in a way that didn't maintain the 1:1 order of matching forward and reverse read…
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Sorry I accidentally hit enter BWA-MEM2 has occurring some error and states that paired reads have different names so I am trying to com…
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Curious as to what is `gentrome`? Genome decoy + transcriptome?
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