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1,000 results • Page
2 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
125
views
How to summarize dbCAN3 results
dbCAN
CAZy
CAZyme
dbCAN3
dbCAN2
3 days ago by
Nishat
• 0
0
votes
0
replies
137
views
what exactly is a k-mer table (remora)?
remora
basecall
3 days ago by
anne
• 0
1
vote
1
reply
160
views
Help/Direction Needed for Data Analysis of RNA
Sequencing
RNA-seq
DNA-Seq
updated 3 days ago by
dsull
★ 5.8k • written 3 days ago by
niruf
• 0
0
votes
0
replies
130
views
GWAS Phenotypes
GWAS
4 days ago by
solomoncharles77
▴ 90
0
votes
2
replies
288
views
GSEA analysis in R
GSEA
R
Arabidopsis
2 days ago by
Sudip
• 0
0
votes
0
replies
113
views
Add geno header to VariantAnnotation objects
nichenet
scRNA-seq
4 days ago by
QX
• 0
2
votes
5
replies
370
views
Where to find the homopolymer regions bed file for Hg002 genome?
simple-repeats
hg002
bed
homopolymer-regions
3 days ago by
Bikram Kumar
• 0
0
votes
2
replies
234
views
Statistical Advice Needed for RNAseq Data Analysis
Statistical-Significance
Genomics
RNA-seq
Data-Analysis
updated 3 days ago by
Ram
43k • written 4 days ago by
David
• 0
1
vote
2
replies
242
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq
kallisto
3 days ago by
bioinfo
▴ 150
0
votes
1
reply
177
views
How to get the reference panel sites for TOPMed hg37 and 38
Imputation
updated 4 days ago by
bk11
★ 2.3k • written 4 days ago by
sinhas
• 0
0
votes
1
reply
192
views
merging Seurat objects after SCT
Seurat
SCT
updated 4 days ago by
Ram
43k • written 4 days ago by
michelle.swarovski
• 0
0
votes
1
reply
174
views
Two databases: Human Microbiome Project and MGnify
Microbiome
databases
updated 4 days ago by
GenoMax
141k • written 4 days ago by
haiying.kong
▴ 360
0
votes
2
replies
244
views
RNAseq 1 control 2 different treatment
RNA-seq
4 days ago by
matteo.levorato
• 0
1
vote
0
replies
133
views
Seeking Advice on Gene Ontology Analysis for Bulk RNA-Seq Data Without Control Samples
Gene-ontology
RNA-seq
R
updated 4 days ago by
Ram
43k • written 4 days ago by
Oscar
▴ 10
0
votes
0
replies
138
views
How should I make kallisto indexes?
kallisto
updated 4 days ago by
GenoMax
141k • written 4 days ago by
bioinfo
▴ 150
2
votes
0
replies
191
views
What are good Python models/packages to predict small molecula (SMILES) binding to proteins ?
SMILES
5 days ago by
Alexander
▴ 220
1
vote
1
reply
165
views
Do I need to go back and filter my long-reads?
alignment
nanopore
filtering
QC
ONT
updated 5 days ago by
GenoMax
141k • written 5 days ago by
eesiribloom
▴ 80
0
votes
0
replies
129
views
Automated internal stop codon checker
ORF
stopcodon
internal
virus
5 days ago by
Balazs Horvath
▴ 10
0
votes
0
replies
132
views
Repeat expansion identification tools for long-read data
fragilex
repeatexpansion
long-read
fmr1
5 days ago by
adarsh_pp
▴ 40
0
votes
0
replies
143
views
FreeBayes detection capacity
reads
freebayes
long
5 days ago by
quentinperriere
• 0
0
votes
2
replies
216
views
VCF annotation with gnomADv4 using R package
annotation
gnomADv4
R
VCF
3 days ago by
DKA
▴ 40
0
votes
2
replies
240
views
How to identify gaps in a genome?
awk
seqkit
assembly
fasta
genome
4 days ago by
rj.rezwan
• 0
0
votes
0
replies
155
views
Plotting heatmap of genes in each samples scRNA in Seurat
scRNA
heatmap
5 days ago by
Hien
• 0
0
votes
2
replies
266
views
Merging Outputs from plink --assoc and --hardy to Produce Table
PLINK
PANDAS
R
3 days ago by
Koketso
• 0
0
votes
0
replies
181
views
Novel cyclic peptide structure prediction
protein
structure-prediction
alphafold
peptide
updated 5 days ago by
Ram
43k • written 6 days ago by
menyawino
• 0
1
vote
3
replies
317
views
Ensembl gene id conversion
biomart
ensembl
updated 4 days ago by
ATpoint
81k • written 6 days ago by
naveedhasan2000
• 0
1
vote
2
replies
296
views
Extracting information from gff3 file produced by augustus
augustus
gff3
updated 4 days ago by
Istvan Albert
100k • written 6 days ago by
Jiang
• 0
0
votes
0
replies
178
views
Core SNP tree VS. concatenated core genome tree
phylogenetic
tree
SNP
7 days ago by
YiweiZhu
▴ 30
0
votes
0
replies
189
views
Somatic and Germline variant calling for tumor, normal and blood sample
germline
variants
somatic
updated 6 days ago by
Ram
43k • written 7 days ago by
anitharavichandran2211
• 0
0
votes
2
replies
307
views
Help with understanding the identifier mapping tables in the backend of HUMAnN
metagenomics
metacyc
enzyme
biobakery
humann
6 days ago by
O.rka
▴ 710
0
votes
6
replies
520
views
PacBio adapters in transcriptome assembly from short read data?
adapter
transcriptome
sequencing
pacbio
vecscreen
4 days ago by
Dunois
★ 2.5k
4
votes
7
replies
527
views
DESeq2 Multifactor Design
RNA-seq
DESeq2
updated 6 days ago by
Ram
43k • written 7 days ago by
AHerik
▴ 20
0
votes
0
replies
175
views
Using Delly/Pindel/breakdancer for Identifying Transgene Insertion Sites in Mouse Genome
breakdancer
insertion
Pindel
variation
Delly
updated 7 days ago by
GenoMax
141k • written 7 days ago by
zec018
• 0
0
votes
0
replies
187
views
SeuratDisk: including "counts" dataset in conversion to AnnData
Seurat
SeuratDisk
AnnData
updated 7 days ago by
Ram
43k • written 7 days ago by
roussine
▴ 10
0
votes
0
replies
174
views
I am getting more annotation hits from HOMER than I have actual peaks. Is that normal?
ATAC-seq
HOMER
7 days ago by
Ronin
• 0
4
votes
13
replies
792
views
RNAseq of primary tumor and metastases in two different organ
metastases
RNA-seq
DEG
R
updated 3 days ago by
BioinfGuru
★ 1.7k • written 9 days ago by
matteo.levorato
• 0
2
votes
1
reply
236
views
VEP annotation --per_gene allele choice
VEP
updated 7 days ago by
Ram
43k • written 8 days ago by
atariw
▴ 10
0
votes
2
replies
270
views
Are GeneExpression Subtype annotations removed from TCGA-GBM?
tcga-gbm
subtyping
tcga
updated 7 days ago by
Zhenyu Zhang
★ 1.2k • written 8 days ago by
Apollonia
• 0
1
vote
1
reply
236
views
RNA seq normalization and gene gene correlation
rna-seq
pearson-correlation
vst
updated 7 days ago by
Ram
43k • written 8 days ago by
Fish
• 0
0
votes
0
replies
179
views
Snakemake fails to find conda in PBS
snakemake
8 days ago by
yixinzeng
• 0
0
votes
0
replies
184
views
KaryoPlot: Gene coverage over centromeric regions
Gene
coverage
Centromere
Bedtools
8 days ago by
Mary
• 0
0
votes
0
replies
173
views
Protein stability analysis
mutation
analysis
8 days ago by
marco.barr
▴ 60
1
vote
4
replies
374
views
what is the normal range of htseq-count output for homo sapiens RNA-Seq
Transcriptomics
htseq-count
RNA-Seq
NGS
hisat2
updated 7 days ago by
BioinfGuru
★ 1.7k • written 8 days ago by
Morteza
• 0
3
votes
1
reply
257
views
how to change the gene header names in a fasta file?
fasta
bioawk
awk
seqkit
updated 8 days ago by
Ram
43k • written 8 days ago by
rj.rezwan
• 0
0
votes
0
replies
162
views
Multiple Spike-Ins
MeRIP
Spike-In
8 days ago by
Adam
▴ 20
0
votes
0
replies
158
views
Tools for Sequence Consensus
Consensus-Sequence
bacteria
updated 8 days ago by
Ram
43k • written 8 days ago by
Reno
• 0
2
votes
2
replies
265
views
DepMap: siRNA and CRSIPR discrepancy
DepMap
updated 8 days ago by
ATpoint
81k • written 8 days ago by
Shicheng Guo
★ 9.4k
1
vote
0
replies
149
views
phasing tumor long-reads
nanopore
ONT
haplotag
phasing
tumor
8 days ago by
eesiribloom
▴ 80
0
votes
3
replies
300
views
10x GEX and ADT data analysis in Seurat
Seurat
scRNA-seq
ADT
Cite-seq
GEX
updated 7 days ago by
ATpoint
81k • written 8 days ago by
gdfsnkfns
• 0
0
votes
4
replies
295
views
Questions about transfering wgs file to reference genome file
fasta
cram
genome
8 days ago by
me
• 0
1,000 results • Page
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Answer: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
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You can, if you use RStudio via Docker, for example `bioconductor/bioconductor_docker`. I currently manage many different projects with thi…
Comment: bam merging for archaic samples
by
Matteo Ungaro
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@Pierre Lindenbaum I see. So, I can actually manipulate just one single RG tag at the time with `samtools`? Which flag should I use, or sho…
Comment: bam merging for archaic samples
by
Pierre Lindenbaum
161k
RG tag "L9302" is missing the the BAM header. You should have something like this in the BAM header ``` @RG ID:L9302 SM:L9302 ``` may be…
Answer: Filtering sam or bam file with maximum matching region
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Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
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★ 1.7k
That makes a lot more sense. Thank you.
Answer: Removing Illumina microarray probes with no expression HumanHT-12v4
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Type ``` help("read.idat") ``` and read the example at the bottom of the page, which shows you how to set the `other$Detection` component o…
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Accurately assessing a few QC metrics is trivially easy. Assessing the significance of variants in a clinically responsible way is really…
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If _1 and _2 really are the same library, you should rename the fastqs, or make symlinks, such that they have the same sample name, but dif…
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Just delete the index read files. They just take up space and will never be used.
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Yes. Why wouldn't you use, say, AddOrReplaceReadsGroups?
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See this section on how to use tximport to import StringTie output for DESeq2 processing: https://bioconductor.org/packages/devel/bioc/vign…
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