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1,000 results • Page
2 of 20
Sort: replies
Rank
Views
Votes
Replies
1
vote
12
replies
3.4k
views
Can anyone explain the weird Insert Size HIstogram
RNA-Seq
alignment
sequencing
updated 22 days ago by
ATpoint
68k • written 5.3 years ago by
SMILE
▴ 170
1
vote
12
replies
619
views
weird alignment results for RNAseq data
hisat2
star
updated 9 months ago by
cpad0112
21k • written 9 months ago by
Sara
▴ 220
3
votes
12
replies
3.5k
views
Chromosome Data -- Only genes for given chromosome, without introns and with annotated motifs, possible?
Assembly
gene
sequence
genome
rna-seq
updated 10 months ago by
Ram
37k • written 8.1 years ago by
ldpubsec
▴ 80
2
votes
12
replies
1.7k
views
Nothing will align with HTSeq?
RNA-Seq
htseq
updated 4 months ago by
Ram
37k • written 7.4 years ago by
Kristin Muench
▴ 610
0
votes
12
replies
795
views
Can't exec "cd": No such file or directory at ./PAst.pl line 43
PAst
updated 9 months ago by
lieven.sterck
14k • written 9 months ago by
Neel
▴ 10
0
votes
12
replies
743
views
Splitting CRAM files
CRAM-files
sequence-alignment
7 weeks ago by
langziv
▴ 20
2
votes
12
replies
496
views
how to align an intron from a complex
genomic
updated 7 months ago by
WouterDeCoster
47k • written 7 months ago by
Bioinfo
• 0
2
votes
12
replies
1.0k
views
The best way to get gene lengths for 15K+ genes?
r
EDAseq
RNA-seq
4 months ago by
JACKY
▴ 70
4
votes
12
replies
830
views
Bulk RNA seq: all p adjusted are the same
p-adj
RNA-seq
differential-gene-expression
updated 5 weeks ago by
Ram
37k • written 8 months ago by
nils.simon.biology
▴ 10
0
votes
12
replies
2.5k
views
Allpaths- Keep getting ConvertToFastbQualb.pl failed for group 'paired_ends' when I run PrepareAllPaths
next-gen
Assembly
updated 5 weeks ago by
Ram
37k • written 7.6 years ago by
mafireyi
▴ 80
0
votes
12
replies
3.7k
views
miRDeep2: expression reads and input reads not tallying
miRDeep2
miRNA
updated 12 months ago by
Ram
37k • written 8.2 years ago by
SJ Basu
▴ 40
0
votes
12
replies
1.8k
views
Tax4Fun2 - error
tax4fun
silva
blast
updated 5 months ago by
GenoMax
125k • written 11 months ago by
ymj
▴ 10
1
vote
12
replies
3.1k
views
How to run multiple alignment and SNP-calling of WGS data in .gb and .fasta using Python or Ruby/Java or any free software?
alignment
sequencing
software
updated 7 months ago by
Ram
37k • written 7.8 years ago by
fashiondesignrussian
▴ 60
0
votes
11
replies
2.2k
views
mpiBLAST Score and E-value Calculation
blast
sequence
updated 8 months ago by
Ram
37k • written 7.9 years ago by
Lakshman Rao
• 0
4
votes
11
replies
2.2k
views
7 follow
Getting coding sequence length
NCBI
Gene
CDS
updated 7 months ago by
newbio17
▴ 350 • written 2.5 years ago by
fi1d18
★ 4.1k
1
vote
11
replies
3.8k
views
Pileup viewer for VCF v4.2
bcftools-merge
vcf
vcf4.2
IGV
updated 11 months ago by
Ram
37k • written 8.2 years ago by
Lee Katz
★ 3.1k
3
votes
11
replies
12k
views
What is the acceptable % of reads that map to no feature (in RNASeq)?
htseq
RNA-Seq
STAR
updated 9 months ago by
Ram
37k • written 8.0 years ago by
noushin.farnoud
▴ 120
0
votes
11
replies
732
views
Python - Samtools mpileup find snps with allele frequency
snp
mpileup
python
samtools
7 months ago by
pablosolar.r
▴ 20
0
votes
11
replies
1.3k
views
Bowtie2 no build the index
bowtie2
updated 12 months ago by
Carlo Yague
8.3k • written 12 months ago by
Corona Cano
• 0
5
votes
11
replies
1.0k
views
Differences in unique mapping between STAR and BLAST?
alignment
RNAseq
BLAST
STAR
12 months ago by
steel1990
▴ 20
1
vote
11
replies
2.6k
views
merge samples in phyloseq returns NAs
R
phyloseq
biom
updated 12 weeks ago by
joe.e.weaver
• 0 • written 2.5 years ago by
annaA
▴ 10
2
votes
11
replies
2.0k
views
bbmap.sh: line 352 /random number/ Killed
bbmap
bbmap.sh: line 352 Killed
metagenome
updated 11 months ago by
GenoMax
125k • written 2.9 years ago by
mutantjoo0
• 0
3
votes
11
replies
736
views
RepeatMasker error
repeatmasking
transciptome
RNA-seq
updated 6 months ago by
mark.ziemann
★ 1.8k • written 6 months ago by
barrypraveen
▴ 100
4
votes
11
replies
5.0k
views
Correct way to calculate VAF (Variant allele fraction) from a VCF file
VCF
snp
5 months ago by
prasundutta87
▴ 640
10
votes
11
replies
8.1k
views
How to adjust my manhattan plot to look better?
qqman
manhattan
R
updated 8 months ago by
Ram
37k • written 7.8 years ago by
SheelS
▴ 40
1
vote
11
replies
3.9k
views
Running survival analysis using Rplink
Cox
Survival
R
GWAS
PLINK
updated 10 months ago by
Ram
37k • written 8.0 years ago by
Caragh
▴ 40
8
votes
11
replies
1.1k
views
using STAR instead of HISAT2
STAR
updated 6 months ago by
Ram
37k • written 6 months ago by
Chris
▴ 60
3
votes
11
replies
898
views
Feature count is very low using htseq-count
htseq
bbmap
10 months ago by
salmon
▴ 10
5
votes
11
replies
6.2k
views
Error while running miso
RNA-Seq
splicing
updated 6 months ago by
Ram
37k • written 7.5 years ago by
priyankamaripuri
▴ 40
0
votes
11
replies
1.1k
views
Error in Importing data in qiime2
Metagenomics
Sequencing
Qiime2
Amplicon
6 months ago by
Vaishnavi
• 0
2
votes
11
replies
1.2k
views
how to run seqkit in a loop with multiple files
seqkit
scaffolds
python
11 months ago by
Kumar
▴ 150
3
votes
11
replies
4.7k
views
BWA error: no ID within the read group line
bwa
readgroups
RG
parallel
updated 11 months ago by
Ram
37k • written 2.1 years ago by
whb
▴ 50
4
votes
11
replies
958
views
Running STAR
STAR
5 months ago by
Chris
▴ 60
0
votes
11
replies
493
views
Problem with Trimmomatic Multiple Paired-End sequencing.
Trimmomatic
updated 9 days ago by
GenoMax
125k • written 11 days ago by
john
• 0
3
votes
10
replies
3.1k
views
Somaticsniper Hangs Up
updated 9 months ago by
Ram
37k • written 8.9 years ago by
Jack
▴ 80
7
votes
10
replies
3.3k
views
Choosing phylogenetic approaches
phylogeny
updated 11 months ago by
Ram
37k • written 8.4 years ago by
Yongjie Zhang
▴ 100
4
votes
10
replies
2.2k
views
downloading and running tidyverse package in R
seq
analysis
tidyverse
rna
6 months ago by
bioinformatics
▴ 10
5
votes
10
replies
4.4k
views
Antisense transcription - how to detect it?
RNA-Seq
antisense
updated 5 months ago by
Ram
37k • written 7.3 years ago by
John
13k
2
votes
10
replies
980
views
Generate pin phr and psq files of a fasta file
openms
proteomics
knime
fasta
uniprot
updated 9 months ago by
lieven.sterck
14k • written 10 months ago by
Natasha
▴ 40
1
vote
10
replies
3.1k
views
R code to match the positions for repetitive elements in rmsk file for mouse mm10 with mouse genome
next-gen
R
RNA-Seq
updated 9 months ago by
Ram
37k • written 7.9 years ago by
M K
▴ 590
4
votes
10
replies
3.5k
views
TCGA normalized count data of 1000 samples for DGE
RNA-Seq
TCGA
updated 4 days ago by
Ram
37k • written 7.7 years ago by
David_emir
▴ 460
2
votes
10
replies
546
views
Can I directly compare the regions defined by peaks from pair-end 50 and pair-end 100 ATAC-seq?
ATAC-seq
updated 4 months ago by
ATpoint
68k • written 4 months ago by
Dan
▴ 60
7
votes
10
replies
3.7k
views
PSMC using haploid genomes
haploid
genome
PSMC
updated 10 months ago by
Ram
37k • written 8.2 years ago by
biogirl
▴ 200
0
votes
10
replies
872
views
DeSeq2 "some values in assay are negative"
RNAseq
11 weeks ago by
Morris_Chair
▴ 330
0
votes
10
replies
701
views
using txt file to pass pathways for pipelines
muscle
seqkit
bash
fasta
updated 6 months ago by
Ram
37k • written 6 months ago by
Hugo
• 0
1
vote
10
replies
969
views
Weird results for scRNA-seq
scRNA-seq
GEO
updated 4 weeks ago by
Giuseppe
▴ 60 • written 6 weeks ago by
tujuchuanli
▴ 100
5
votes
10
replies
4.0k
views
alignment rate in bowtie2
sequencing
RNA-Seq
updated 8 months ago by
Ram
37k • written 7.0 years ago by
fi1d18
★ 4.1k
6
votes
10
replies
750
views
Understanding bam tracks
RNA
sequencing
bam
updated 4 months ago by
Pierre Lindenbaum
152k • written 4 months ago by
Tonkatsu
▴ 30
5
votes
10
replies
545
views
How to change chromosome names in assembly fasta downloaded from NCBI?
grch38
ncbi
grch37
fasta
4 months ago by
magnolia
▴ 20
6
votes
10
replies
3.1k
views
Problem with logFC values
EdgeR
logFC
next-gen
R
RNA-Seq
updated 11 months ago by
Ram
37k • written 8.2 years ago by
sayuj.koyyappurath
• 0
1,000 results • Page
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