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1,000 results • Page
1 of 20
Sort: Views
Rank
Views
Votes
Replies
9
votes
13
replies
14k
views
Sort bam file by coordinates using samtools
next-gen-sequencing
gene
rna-seq
updated 5 months ago by
Ram
41k • written 5.2 years ago by
Shahzad
▴ 30
0
votes
4
replies
11k
views
Convert .gbf file to .gbk or .gff
gbk
gff
gbf
updated 10 months ago by
Ram
41k • written 8.5 years ago by
che.bellaj
• 0
2
votes
3
replies
11k
views
converting maf to vcf
Exome
maf2vcf
updated 10 months ago by
Ram
41k • written 8.5 years ago by
ashishchahl
• 0
3
votes
16
replies
11k
views
combining z-scores into a single z-score value
excel
R
statistics
updated 6 months ago by
Ram
41k • written 4.7 years ago by
Star
▴ 60
0
votes
0
replies
10k
views
pheatmap row annotation and title font size questions
heatmap
pheatmap
updated 10 months ago by
Ram
41k • written 8.5 years ago by
neokao
• 0
2
votes
8
replies
9.8k
views
Size of typical genomic data
genomic
updated 8 months ago by
Ram
41k • written 5.6 years ago by
Nicolas Rosewick
10k
0
votes
8
replies
9.5k
views
how to find a read by name in a bam file
next-gen-sequencing
updated 5 months ago by
Ram
41k • written 6.4 years ago by
himanimalhotra89
• 0
3
votes
8
replies
8.8k
views
Quantile normalizing prior to or after TPM scaling?
RNAseq
normalization
updated 9 months ago by
Kevin Blighe
86k • written 6.0 years ago by
mforde84
★ 1.4k
7
votes
8
replies
8.7k
views
Determining read count
trimmomatic
rna-seq
trinity
updated 3 months ago by
Ram
41k • written 7.6 years ago by
nikelle.petrillo
▴ 110
18
votes
4
replies
8.5k
views
How To Find Rna-Seq Data Of Published Papers?
geo
next-gen
RNA-seq
updated 9 months ago by
Ram
41k • written 10.3 years ago by
user
▴ 940
1
vote
2
replies
8.3k
views
vcf compare between 2 vcf files using vcf tools
vcftools
updated 8 months ago by
Ram
41k • written 7.0 years ago by
bioguy24
▴ 230
4
votes
9
replies
8.2k
views
bcftools consensus command
vcf
bcftools
updated 8 months ago by
Ram
41k • written 3.9 years ago by
Begonia_pavonina
▴ 120
2
votes
7
replies
8.1k
views
linux 'cat' command merge fasta files without headers
fasta
linux
updated 9 months ago by
Ram
41k • written 9.5 years ago by
esterbuiate
• 0
2
votes
1
reply
7.9k
views
ROH by PLINK
plink
ROH
updated 9 months ago by
Ram
41k • written 8.6 years ago by
afadda
▴ 20
1
vote
2
replies
7.5k
views
Converting vcf to fasta format
fasta
samtools
vcf
alignment
next-gen
updated 11 months ago by
Ram
41k • written 8.4 years ago by
JW
▴ 10
0
votes
10
replies
7.4k
views
Error: reads file does not look like a fastq file
fastq
bowtie2
ChIP-Seq
updated 8 months ago by
Ram
41k • written 7.2 years ago by
addilynn.beach
▴ 40
2
votes
7
replies
7.3k
views
Bowtie2 run out of memory
software-error
alignment
bowtie2
updated 10 months ago by
Ram
41k • written 8.6 years ago by
anon
▴ 50
2
votes
10
replies
7.0k
views
fq.gz file use
BioEdit
R
updated 8 months ago by
Ram
41k • written 4.8 years ago by
choi.yisoo.hi
• 0
4
votes
45
replies
7.0k
views
SAM file wrong? help with validatesamfile
EXOME
updated 7 months ago by
Ram
41k • written 7.4 years ago by
cristina_sabiers
▴ 110
0
votes
7
replies
6.9k
views
Problem in in alignment by muscle
sequence
muscle
alignment
updated 5 months ago by
Ram
41k • written 6.3 years ago by
misbahabas
▴ 70
3
votes
5
replies
6.6k
views
Converting Vcftools output to R readable format
vcf
SNP
R
vcftools
updated 10 months ago by
Ram
41k • written 8.5 years ago by
pifferdavide
▴ 110
0
votes
0
replies
6.5k
views
E-values calculation (MEME)
meme
updated 10 months ago by
Ram
41k • written 8.5 years ago by
anahochmanova
▴ 10
1
vote
4
replies
6.2k
views
Why wont my newick file from MEGA open in FigTree?
software error
phylogenetic tree
MEGA
FigTree
updated 9 months ago by
Joe
21k • written 4.1 years ago by
rdmitche
▴ 10
3
votes
7
replies
6.0k
views
running trimmomatic inside Trinity
Assembly
Trinity
RNA-seq
trimmomatic
updated 5 months ago by
Ram
41k • written 7.7 years ago by
lay_0
▴ 50
1
vote
7
replies
6.0k
views
Human reference files in HG38 GATK resource bundle
VCF
updated 6 months ago by
DareDevil
★ 3.3k • written 5.8 years ago by
win
▴ 970
0
votes
3
replies
5.9k
views
STRINGTIE WARNING: no reference transcripts were found for the genomic sequences where reads were mapped
RNA-Seq
assembly
updated 11 months ago by
Roy.anupama11
• 0 • written 4.7 years ago by
hirahameed222
• 0
1
vote
5
replies
5.9k
views
Converting text format Mass spectrometry data to mzXML?
mass spectrometry
data formats
mzXNL
ASCII
updated 12 months ago by
Ram
41k • written 8.4 years ago by
maildiary.arnab
• 0
10
votes
15
replies
5.8k
views
convert fasta/gb to vcf
fasta
vcf
genbank
gff
updated 8 months ago by
Ram
41k • written 5.2 years ago by
marongiu.luigi
▴ 690
1
vote
1
reply
5.7k
views
GtfToGenePred errors in converting GTF files.
software-error
updated 11 months ago by
Ram
41k • written 8.4 years ago by
tszn1984
▴ 100
1
vote
5
replies
5.7k
views
Generate VCF File from Bam file and fasta by GATK
vcf
SNP
genome
next-gen
updated 5 months ago by
Ram
41k • written 6.3 years ago by
misbahabas
▴ 70
1
vote
3
replies
5.6k
views
How to convert a .gbff to the .gbk using batch method (to do it computationally for several bacteria)
gbff
genome
gbk
updated 8 months ago by
Ram
41k • written 6.0 years ago by
natasha.sernova
★ 3.9k
0
votes
4
replies
5.6k
views
using IGV to visualize RNA seq alignment to transcriptome
rna-seq
igv
alignment
updated 3 months ago by
Ram
41k • written 7.5 years ago by
nikelle.petrillo
▴ 110
1
vote
6
replies
5.6k
views
Can one use STAR (splice-aware) to align genomic DNA (non-spliced)
genome
ChIP-Seq
updated 11 months ago by
Gopal
• 0 • written 5.1 years ago by
goodez
▴ 640
0
votes
7
replies
5.6k
views
save command output to a file in pymol
pymol
python
updated 7 months ago by
Ram
41k • written 6.9 years ago by
ac.research
▴ 30
4
votes
3
replies
5.6k
views
What is gnomAD allele frequency
AF
gnomAD
updated 9 months ago by
solarchan7
• 0 • written 2.6 years ago by
Eric Wang
▴ 40
1
vote
10
replies
5.6k
views
which field has more scope Bioinformatics or Biomedical engineering at MS level???
biomedical
updated 7 months ago by
Ram
41k • written 7.3 years ago by
purpledora100
• 0
2
votes
14
replies
5.6k
views
Using sam-dump in SRA toolkit to download chr20.bam from NA12878
sratoolkit
sam-dump
updated 5 months ago by
Ram
41k • written 6.6 years ago by
Covux
▴ 10
0
votes
4
replies
5.5k
views
Calculate Radius of Gyration [python 3]
biopython
PDB
Radius of Gyration
python
protein
updated 5 months ago by
Franco
• 0 • written 6.1 years ago by
ac.research
▴ 30
0
votes
3
replies
5.4k
views
Bedgraphtobigwig Conversion Difficulties
bigwig
updated 4 months ago by
Ram
41k • written 10.8 years ago by
stu.andrews
• 0
1
vote
2
replies
5.4k
views
sortmerna command not working
NGS
RNA-Seq
sortmerna
updated 7 months ago by
Ram
41k • written 7.5 years ago by
Shahzad
▴ 30
9
votes
4
replies
5.4k
views
How to analyse normalized read count?
RNA-Seq
R
updated 11 months ago by
Ram
41k • written 8.5 years ago by
pbio
▴ 150
0
votes
8
replies
5.4k
views
miRNA annotation from miRBase 21
miRBase
gene-annotation
next-gen
updated 8 months ago by
Ram
41k • written 9.2 years ago by
bioinforupesh2009.au
▴ 140
0
votes
2
replies
5.4k
views
GDC Data Portal
collaboration
updated 7 months ago by
Ram
41k • written 7.2 years ago by
ranlab
• 0
1
vote
3
replies
5.4k
views
Use samtools to access bam file in aws s3 storage
samtools
updated 8 months ago by
Ram
41k • written 7.2 years ago by
xing
▴ 10
0
votes
3
replies
5.3k
views
fastq-dump: command not found, what is wrong?
assembly
sratoolkit
genomics
updated 5 months ago by
Ram
41k • written 2.3 years ago by
BioinfoNoob6
• 0
3
votes
2
replies
5.3k
views
Filtering VCF with vcf-tools using --maf=0.0001 filters out all homozygous calls ?!
vcf
vcftools
variants
updated 8 months ago by
Ram
41k • written 5.7 years ago by
fwuffy
▴ 110
1
vote
4
replies
5.3k
views
vcf files and zygosity
freebayes
variant-calling
samtools
updated 11 months ago by
Ram
41k • written 8.5 years ago by
vasilislenis
▴ 150
0
votes
2
replies
5.2k
views
downloading and installing Mr Bayes
software-error
updated 11 months ago by
Ram
41k • written 8.5 years ago by
jasbadesha27
• 0
1
vote
4
replies
5.2k
views
Conditionally coloring the fold change values to plot a heatmap using pheatmap
R
heatmap
updated 6 months ago by
Ram
41k • written 5.8 years ago by
chetana
▴ 60
2
votes
5
replies
5.2k
views
Multiple alignment format (MAF) to VCF
MAF
VCF
updated 8 months ago by
Ram
41k • written 7.7 years ago by
ksw
▴ 40
1,000 results • Page
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Recent Votes
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Answer: How to obtain data on the coordinates of the Exon region from UCSC
Answer: How to obtain data on the coordinates of the Exon region from UCSC
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